Cow genome map
| Conread name: | Ovi1-UMC-pd3ov4-002-c04 |
| Conread position: | 1-328 |
| Cow position: | chr29:19889110-19889447 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 172 |
| Conread position: | 39-328 |
| Cow position: | chr29:17406704-17406988 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 240 |
| Conread position: | 42-324 |
| Cow position: | chr29:32287830-32288106 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 10 |
| Conread position: | 42-330 |
| Cow position: | chr29:27812668-27812949 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 43-328 |
| Cow position: | chr29:5981136-5980847 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 51, 129 |
| Conread position: | 45-278 |
| Cow position: | chr29:45624973-45625213 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 45-325 |
| Cow position: | chr29:16172519-16172248 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 55, 105 |
| Conread position: | 45-328 |
| Cow position: | chr29:6874285-6874010 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 32, 69 |
| Conread position: | 45-336 |
| Cow position: | chr29:8665091-8665379 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 123 |
| Conread position: | 46-219 |
| Cow position: | chr29:36634796-36634621 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 145 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 53, 116 |
| Conread position: | 46-219 |
| Cow position: | chr29:42803978-42804154 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 46-221 |
| Cow position: | chr29:5959162-5959340 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 46-230 |
| Cow position: | chr29:45461333-45461520 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 46-260 |
| Cow position: | chr29:14113129-14113344 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 97, 54 |
| Conread position: | 46-261 |
| Cow position: | chr29:647397-647613 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 54, 31 |
| Conread position: | 46-266 |
| Cow position: | chr29:42204684-42204905 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 53, 175 |
| Conread position: | 46-269 |
| Cow position: | chr29:3175867-3175643 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 53, 98 |
| Conread position: | 46-278 |
| Cow position: | chr29:23977710-23977946 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-278 |
| Cow position: | chr29:45206117-45206353 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 46-325 |
| Cow position: | chr29:46874-46601 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 226 |
| Conread position: | 46-326 |
| Cow position: | chr29:16024150-16024425 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 227 |
| Conread position: | 46-327 |
| Cow position: | chr29:7845977-7846253 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-327 |
| Cow position: | chr29:10022745-10022469 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-327 |
| Cow position: | chr29:13622271-13621995 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 229 |
| Conread position: | 46-327 |
| Cow position: | chr29:15625134-15624862 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 61, 13 |
| Conread position: | 46-327 |
| Cow position: | chr29:19526699-19526423 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-327 |
| Cow position: | chr29:21431265-21430992 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 176 |
| Conread position: | 46-327 |
| Cow position: | chr29:27180166-27179890 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-327 |
| Cow position: | chr29:31182989-31183265 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 227 |
| Conread position: | 46-327 |
| Cow position: | chr29:32558164-32557889 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 76 |
| Conread position: | 46-327 |
| Cow position: | chr29:35298497-35298773 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-327 |
| Cow position: | chr29:38207077-38206802 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 229 |
| Conread position: | 46-328 |
| Cow position: | chr29:409672-409398 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 46-328 |
| Cow position: | chr29:609061-608784 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 101 |
| Conread position: | 46-328 |
| Cow position: | chr29:2101426-2101702 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 122 |
| Conread position: | 46-328 |
| Cow position: | chr29:2465289-2465013 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 46-328 |
| Cow position: | chr29:2691749-2692026 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 220 |
| Conread position: | 46-328 |
| Cow position: | chr29:2839756-2839477 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 46-328 |
| Cow position: | chr29:4633046-4632783 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 46-328 |
| Cow position: | chr29:7429533-7429256 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 238 |
| Conread position: | 46-328 |
| Cow position: | chr29:9082300-9082022 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 234 |
| Conread position: | 46-328 |
| Cow position: | chr29:9641198-9640920 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 232 |
| Conread position: | 46-328 |
| Cow position: | chr29:10645823-10645547 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 226 |
| Conread position: | 46-328 |
| Cow position: | chr29:13018283-13018554 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 46-328 |
| Cow position: | chr29:14209965-14209688 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 225 |
| Conread position: | 46-328 |
| Cow position: | chr29:16345799-16346064 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 54, 163 |
| Conread position: | 46-328 |
| Cow position: | chr29:19621685-19621403 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 232 |
| Conread position: | 46-328 |
| Cow position: | chr29:19655207-19655482 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 40 |
| Conread position: | 46-328 |
| Cow position: | chr29:21422108-21421834 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 97 |
| Conread position: | 46-328 |
| Cow position: | chr29:25930934-25930655 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 64 |
| Conread position: | 46-328 |
| Cow position: | chr29:26163246-26162972 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 150 |
| Conread position: | 46-328 |
| Cow position: | chr29:38228565-38228839 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 236 |
| Conread position: | 46-328 |
| Cow position: | chr29:39078124-39077848 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 174 |
| Conread position: | 46-328 |
| Cow position: | chr29:43325103-43325378 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 219 |
| Conread position: | 46-330 |
| Cow position: | chr29:5236608-5236890 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 230 |
| Conread position: | 46-332 |
| Cow position: | chr29:6264413-6264131 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 239 |
| Conread position: | 46-332 |
| Cow position: | chr29:20252752-20253037 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 220 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 60, 226 |
| Conread position: | 46-332 |
| Cow position: | chr29:34798224-34797943 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 111 |
| Conread position: | 46-332 |
| Cow position: | chr29:40501420-40501142 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 190 |
| Conread position: | 46-334 |
| Cow position: | chr29:13851284-13851008 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 64 |
| Conread position: | 46-335 |
| Cow position: | chr29:32892362-32892638 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 85, 64 |
| Conread position: | 47-269 |
| Cow position: | chr29:29704078-29703850 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 49-233 |
| Cow position: | chr29:27979331-27979144 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 53-328 |
| Cow position: | chr29:32541688-32541959 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 214 |
| Conread position: | 56-328 |
| Cow position: | chr29:13583678-13583945 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 219 |
| Conread position: | 61-335 |
| Cow position: | chr29:12794082-12794352 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 39, 164 |
| Conread position: | 64-328 |
| Cow position: | chr29:10822317-10822057 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 36, 206 |
| Conread position: | 98-329 |
| Cow position: | chr29:8625552-8625330 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 151, 55 |
| Conread position: | 108-328 |
| Cow position: | chr29:27261530-27261317 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 9, 165 |
| Conread position: | 112-328 |
| Cow position: | chr29:31095922-31095715 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 137, 157 |
| Conread position: | 128-328 |
| Cow position: | chr29:16688507-16688696 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 122, 136 |
| Conread position: | 148-328 |
| Cow position: | chr29:15996697-15996521 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 153-327 |
| Cow position: | chr29:31122525-31122691 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 96, 127 |
| Conread position: | 180-328 |
| Cow position: | chr29:43965999-43965859 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 67, 81 |
Show alignments to all cow chromosomes.