Cow genome map

Conread name: Ovi1-UMC-pd3ov4-002-c04

Conread position: 1-241
Cow position: chr4:65665151-65664908 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 1-248
Cow position: chr4:20604933-20605191 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 178
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 64, 158

Conread position: 1-326
Cow position: chr4:44742000-44741683 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 24

Conread position: 1-328
Cow position: chr4:34183414-34183097 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 100

Conread position: 1-330
Cow position: chr4:33071591-33071255 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 285

Conread position: 1-336
Cow position: chr4:14819656-14819313 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 246
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 55, 37

Conread position: 2-272
Cow position: chr4:57958220-57958487 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 201
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 39, 81

Conread position: 2-328
Cow position: chr4:60262918-60262584 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 159

Conread position: 9-328
Cow position: chr4:43898272-43897954 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 43

Conread position: 41-332
Cow position: chr4:12239922-12239648 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 8

Conread position: 43-328
Cow position: chr4:50847598-50847320 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 196
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 35, 59

Conread position: 44-278
Cow position: chr4:5925547-5925314 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 95, 63

Conread position: 45-328
Cow position: chr4:14755366-14755094 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 55, 119

Conread position: 46-176
Cow position: chr4:12588634-12588766 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 54, 45

Conread position: 46-206
Cow position: chr4:63199168-63199003 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 54, 151

Conread position: 46-212
Cow position: chr4:16361227-16361396 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 53, 0

Conread position: 46-213
Cow position: chr4:17244412-17244582 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 54, 0

Conread position: 46-260
Cow position: chr4:37988645-37988860 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 54, 95

Conread position: 46-265
Cow position: chr4:34177941-34177727 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 29, 107

Conread position: 46-277
Cow position: chr4:14387127-14387363 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 46-278
Cow position: chr4:11109769-11109532 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 187
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 32, 40

Conread position: 46-278
Cow position: chr4:14139681-14139914 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 53

Conread position: 46-278
Cow position: chr4:60649748-60649990 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 180
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 54, 44

Conread position: 46-324
Cow position: chr4:604936-605205 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 207
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 54, 140

Conread position: 46-324
Cow position: chr4:13494638-13494910 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 221

Conread position: 46-324
Cow position: chr4:41191326-41191054 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 227

Conread position: 46-325
Cow position: chr4:30472519-30472793 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-326
Cow position: chr4:16060584-16060860 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 230

Conread position: 46-326
Cow position: chr4:43318330-43318055 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 227

Conread position: 46-327
Cow position: chr4:827514-827790 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-327
Cow position: chr4:6267885-6267610 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 228

Conread position: 46-327
Cow position: chr4:9355685-9355961 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-327
Cow position: chr4:17502025-17501749 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-327
Cow position: chr4:18338160-18338435 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 166

Conread position: 46-327
Cow position: chr4:28653189-28652913 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-327
Cow position: chr4:32213478-32213754 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 226

Conread position: 46-328
Cow position: chr4:98911-98630 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 75

Conread position: 46-328
Cow position: chr4:160463-160740 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 76

Conread position: 46-328
Cow position: chr4:357211-357488 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 227

Conread position: 46-328
Cow position: chr4:530724-531001 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-328
Cow position: chr4:1048957-1048681 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 34

Conread position: 46-328
Cow position: chr4:1929336-1929056 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 232

Conread position: 46-328
Cow position: chr4:1952261-1951981 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 191

Conread position: 46-328
Cow position: chr4:3127117-3127393 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 141

Conread position: 46-328
Cow position: chr4:3356627-3356351 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 121

Conread position: 46-328
Cow position: chr4:4417359-4417633 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 23

Conread position: 46-328
Cow position: chr4:5881461-5881738 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 77

Conread position: 46-328
Cow position: chr4:6567685-6567962 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 229

Conread position: 46-328
Cow position: chr4:6865202-6864925 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 229

Conread position: 46-328
Cow position: chr4:8702855-8703132 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 181

Conread position: 46-328
Cow position: chr4:10882854-10883120 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 215
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 54, 153

Conread position: 46-328
Cow position: chr4:16639916-16640191 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 64

Conread position: 46-328
Cow position: chr4:17092556-17092283 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 37

Conread position: 46-328
Cow position: chr4:17924655-17924378 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 227

Conread position: 46-328
Cow position: chr4:18423215-18422940 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 92

Conread position: 46-328
Cow position: chr4:20236092-20235809 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 167

Conread position: 46-328
Cow position: chr4:20241825-20242108 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 167

Conread position: 46-328
Cow position: chr4:25598179-25597903 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 97

Conread position: 46-328
Cow position: chr4:26876482-26876205 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 177

Conread position: 46-328
Cow position: chr4:33022332-33022057 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 29, 77

Conread position: 46-328
Cow position: chr4:33494861-33495139 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 223

Conread position: 46-328
Cow position: chr4:36897683-36897956 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 25

Conread position: 46-328
Cow position: chr4:41956069-41956346 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-328
Cow position: chr4:41960206-41960482 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 54, 29

Conread position: 46-328
Cow position: chr4:42405921-42406193 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 210
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 54, 172

Conread position: 46-328
Cow position: chr4:43882411-43882683 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 78

Conread position: 46-328
Cow position: chr4:44726884-44727159 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 238

Conread position: 46-328
Cow position: chr4:46666226-46666492 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 54, 127

Conread position: 46-328
Cow position: chr4:67467303-67467580 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 190
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 41, 214

Conread position: 46-328
Cow position: chr4:67682503-67682781 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 239

Conread position: 46-328
Cow position: chr4:68837692-68837410 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 232

Conread position: 46-330
Cow position: chr4:1366700-1366425 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 192
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 54, 23

Conread position: 46-330
Cow position: chr4:5443519-5443240 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 29

Conread position: 46-332
Cow position: chr4:44779913-44779639 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 18

Conread position: 46-332
Cow position: chr4:48028167-48028443 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 53

Conread position: 46-332
Cow position: chr4:57985298-57985578 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 32

Conread position: 46-336
Cow position: chr4:43867500-43867785 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 231

Conread position: 47-159
Cow position: chr4:9846900-9846785 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 47-334
Cow position: chr4:28833023-28833304 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 99

Conread position: 48-328
Cow position: chr4:6489058-6488789 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 107

Conread position: 51-332
Cow position: chr4:19005020-19004744 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 9

Conread position: 52-328
Cow position: chr4:9647626-9647887 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 186
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 55, 126

Conread position: 56-328
Cow position: chr4:27335254-27335522 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 83

Conread position: 76-327
Cow position: chr4:65222424-65222178 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 199

Conread position: 93-328
Cow position: chr4:8670677-8670906 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 73, 59

Conread position: 98-327
Cow position: chr4:15460904-15460683 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 174
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 151, 174

Conread position: 100-272
Cow position: chr4:21359595-21359768 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 70, 52

Conread position: 118-328
Cow position: chr4:27296405-27296206 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 126, 90

Conread position: 122-327
Cow position: chr4:7731067-7730871 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 158
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 127, 87

Conread position: 142-327
Cow position: chr4:27655179-27655002 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 108, 130

Conread position: 155-336
Cow position: chr4:9846526-9846351 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 95, 121

Conread position: 157-334
Cow position: chr4:54970885-54971052 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 93, 24

Conread position: 162-279
Cow position: chr4:3388116-3388000 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 88, 32

Conread position: 166-332
Cow position: chr4:64216123-64215959 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 84, 65

Show alignments to all cow chromosomes.