Cow genome map

Conread name: Ovi1-UMC-pd3ov4-002-c04

Conread position: 1-248
Cow position: chr9:2211192-2211442 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 45, 166

Conread position: 1-327
Cow position: chr9:8781496-8781176 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 48

Conread position: 1-328
Cow position: chr9:2679680-2680025 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 252
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 54, 92

Conread position: 4-328
Cow position: chr9:9328561-9328252 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 221
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 44, 8

Conread position: 31-328
Cow position: chr9:17304516-17304223 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 243

Conread position: 37-277
Cow position: chr9:60325713-60325466 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 165
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 45-278
Cow position: chr9:43665142-43665374 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 173

Conread position: 45-328
Cow position: chr9:27783660-27783937 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 231

Conread position: 45-330
Cow position: chr9:2000674-2000394 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 122

Conread position: 46-219
Cow position: chr9:37969733-37969557 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 139
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 53, 0

Conread position: 46-225
Cow position: chr9:28001000-28001182 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 143
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 54, 0

Conread position: 46-228
Cow position: chr9:10976591-10976776 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 54, 0

Conread position: 46-239
Cow position: chr9:3804829-3805021 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 154
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 39, 0

Conread position: 46-240
Cow position: chr9:26568078-26568268 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 51, 0

Conread position: 46-248
Cow position: chr9:50698771-50698971 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 14, 55

Conread position: 46-251
Cow position: chr9:27935856-27936064 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 158
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 54, 0

Conread position: 46-265
Cow position: chr9:827634-827410 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 53, 197

Conread position: 46-265
Cow position: chr9:50093761-50093538 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 46-272
Cow position: chr9:4533969-4534202 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 134
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 46-278
Cow position: chr9:19158057-19157817 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 54, 0

Conread position: 46-278
Cow position: chr9:25034085-25033855 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 54, 133

Conread position: 46-278
Cow position: chr9:30673855-30674089 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 203

Conread position: 46-319
Cow position: chr9:17312855-17313118 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 207
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 54, 100

Conread position: 46-322
Cow position: chr9:59509685-59509414 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 193
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 59, 238

Conread position: 46-324
Cow position: chr9:779345-779073 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 228

Conread position: 46-325
Cow position: chr9:59537576-59537850 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 53, 231

Conread position: 46-326
Cow position: chr9:1250522-1250247 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-326
Cow position: chr9:22436429-22436701 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 43

Conread position: 46-327
Cow position: chr9:203818-203542 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 229

Conread position: 46-327
Cow position: chr9:1074700-1074423 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 220

Conread position: 46-327
Cow position: chr9:2172418-2172691 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 207
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 33, 173

Conread position: 46-327
Cow position: chr9:6709434-6709709 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-327
Cow position: chr9:25903999-25904273 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 227

Conread position: 46-327
Cow position: chr9:51212159-51212433 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 53, 37

Conread position: 46-327
Cow position: chr9:64015196-64014920 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-328
Cow position: chr9:129717-129443 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 213
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 57, 76

Conread position: 46-328
Cow position: chr9:221058-220797 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 199
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 23, 0

Conread position: 46-328
Cow position: chr9:2212616-2212892 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 213
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 53, 103

Conread position: 46-328
Cow position: chr9:3310090-3310366 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 216

Conread position: 46-328
Cow position: chr9:4283436-4283710 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 197
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 63, 128

Conread position: 46-328
Cow position: chr9:4307890-4307618 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 197
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 54, 18

Conread position: 46-328
Cow position: chr9:5005461-5005739 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 228

Conread position: 46-328
Cow position: chr9:6250759-6251037 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 239

Conread position: 46-328
Cow position: chr9:7004209-7004486 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 225

Conread position: 46-328
Cow position: chr9:9014547-9014823 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 21

Conread position: 46-328
Cow position: chr9:9707595-9707869 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 44, 31

Conread position: 46-328
Cow position: chr9:12913253-12913535 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 51, 134

Conread position: 46-328
Cow position: chr9:18508350-18508076 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 105

Conread position: 46-328
Cow position: chr9:21410781-21411058 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 227

Conread position: 46-328
Cow position: chr9:25188566-25188849 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 217
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 54, 81

Conread position: 46-328
Cow position: chr9:26083084-26082808 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 188

Conread position: 46-328
Cow position: chr9:27036376-27036653 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 238

Conread position: 46-328
Cow position: chr9:28023276-28023552 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 93

Conread position: 46-328
Cow position: chr9:28679441-28679708 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 207
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 54, 104

Conread position: 46-328
Cow position: chr9:31066194-31066469 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 229

Conread position: 46-328
Cow position: chr9:31809051-31809329 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 232

Conread position: 46-328
Cow position: chr9:37161338-37161064 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 150

Conread position: 46-328
Cow position: chr9:42311154-42311443 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 221
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 54, 240

Conread position: 46-328
Cow position: chr9:44384739-44385000 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 209
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 54, 116

Conread position: 46-328
Cow position: chr9:45874993-45875267 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 53, 103

Conread position: 46-328
Cow position: chr9:47004207-47004484 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 218

Conread position: 46-328
Cow position: chr9:47043436-47043712 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 229

Conread position: 46-328
Cow position: chr9:50792191-50792468 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 227

Conread position: 46-328
Cow position: chr9:51180704-51180427 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 238

Conread position: 46-328
Cow position: chr9:54681271-54680999 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 168

Conread position: 46-328
Cow position: chr9:64026909-64027182 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 197
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 52, 110

Conread position: 46-330
Cow position: chr9:2866503-2866227 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 191
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 115, 54

Conread position: 46-330
Cow position: chr9:4942332-4942049 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 215
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 54, 233

Conread position: 46-330
Cow position: chr9:56302976-56302693 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 238

Conread position: 46-331
Cow position: chr9:46041775-46041496 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 23

Conread position: 46-332
Cow position: chr9:2871809-2872088 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 54, 90

Conread position: 46-332
Cow position: chr9:29026447-29026170 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 53

Conread position: 46-334
Cow position: chr9:20939787-20940058 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 136

Conread position: 46-334
Cow position: chr9:29044287-29044007 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 52, 188

Conread position: 46-334
Cow position: chr9:30828217-30828499 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 166

Conread position: 46-336
Cow position: chr9:13474299-13474020 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 216
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 54, 43

Conread position: 46-336
Cow position: chr9:26101798-26101509 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 220
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 107, 51

Conread position: 46-336
Cow position: chr9:38677620-38677905 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 229

Conread position: 46-336
Cow position: chr9:44819613-44819893 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 13

Conread position: 48-328
Cow position: chr9:1994929-1994654 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 236

Conread position: 50-328
Cow position: chr9:52721915-52722196 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 203
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 50, 250

Conread position: 50-334
Cow position: chr9:49456633-49456913 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 201
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 50, 7

Conread position: 52-331
Cow position: chr9:3962367-3962089 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 203
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 46, 199

Conread position: 52-335
Cow position: chr9:17901092-17900823 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 206
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 48, 19

Conread position: 56-265
Cow position: chr9:12182946-12182725 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 44, 69

Conread position: 56-268
Cow position: chr9:650539-650323 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 169
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 42, 0

Conread position: 56-328
Cow position: chr9:7060590-7060313 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 44, 114

Conread position: 56-328
Cow position: chr9:17062898-17062637 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 206
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 44, 89

Conread position: 56-336
Cow position: chr9:54926021-54926290 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 195
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 41, 173

Conread position: 59-327
Cow position: chr9:2497251-2496988 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 191
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 40, 216

Conread position: 68-328
Cow position: chr9:31090675-31090931 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 147

Conread position: 69-328
Cow position: chr9:34769642-34769897 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 200

Conread position: 71-327
Cow position: chr9:14001559-14001807 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 199
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 29, 12

Conread position: 80-328
Cow position: chr9:16177101-16177340 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 187
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 20, 78

Conread position: 84-328
Cow position: chr9:48149785-48150024 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 191

Conread position: 87-272
Cow position: chr9:1982342-1982531 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 146
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 26, 0

Conread position: 93-328
Cow position: chr9:59481311-59481091 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 154, 70

Conread position: 112-265
Cow position: chr9:22432778-22432927 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 138, 31

Conread position: 115-328
Cow position: chr9:10938277-10938477 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 79, 0

Conread position: 134-328
Cow position: chr9:31112692-31112878 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 115, 134

Conread position: 148-326
Cow position: chr9:29626846-29626678 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 151-332
Cow position: chr9:22440655-22440829 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 99, 126

Conread position: 156-328
Cow position: chr9:2200136-2200301 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 90, 115

Conread position: 156-328
Cow position: chr9:26737510-26737674 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 93, 126

Show alignments to all cow chromosomes.