Cow genome map
| Conread name: | Ovi2-UMC-peov1-002-b11 |
| Conread position: | 26-281 |
| Cow position: | chr12:41965603-41965331 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 26-310 |
| Cow position: | chr12:1007528-1007825 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-310 |
| Cow position: | chr12:38893876-38894173 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 26-312 |
| Cow position: | chr12:47415317-47415608 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 18, 35 |
| Conread position: | 26-320 |
| Cow position: | chr12:19713947-19713640 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 26-326 |
| Cow position: | chr12:37697960-37697649 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 26-328 |
| Cow position: | chr12:3070374-3070687 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 19, 88 |
| Conread position: | 26-328 |
| Cow position: | chr12:7651327-7651010 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 26-328 |
| Cow position: | chr12:35367892-35368207 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 226 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 8, 71 |
| Conread position: | 26-328 |
| Cow position: | chr12:42856039-42855725 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-329 |
| Cow position: | chr12:22686994-22687310 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 26-329 |
| Cow position: | chr12:26223857-26223546 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 18, 137 |
| Conread position: | 26-331 |
| Cow position: | chr12:21075332-21075646 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 26-335 |
| Cow position: | chr12:25435076-25435389 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 101, 19 |
| Conread position: | 26-343 |
| Cow position: | chr12:4581299-4581627 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 164 |
| Conread position: | 26-349 |
| Cow position: | chr12:30141927-30142258 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 8, 59 |
| Conread position: | 26-351 |
| Cow position: | chr12:19972556-19972880 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 26-351 |
| Cow position: | chr12:30502137-30502452 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 92 |
| Conread position: | 26-355 |
| Cow position: | chr12:1173505-1173166 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 18 |
| Conread position: | 26-356 |
| Cow position: | chr12:17663462-17663808 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 50 |
| Conread position: | 26-357 |
| Cow position: | chr12:15231539-15231865 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 18, 131 |
| Conread position: | 27-328 |
| Cow position: | chr12:19040356-19040040 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 27-331 |
| Cow position: | chr12:18010695-18011016 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 230 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 17, 90 |
| Conread position: | 27-357 |
| Cow position: | chr12:23378631-23378974 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 137 |
| Conread position: | 28-329 |
| Cow position: | chr12:30011457-30011143 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 16, 255 |
| Conread position: | 28-329 |
| Cow position: | chr12:30016564-30016250 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 255 |
| Conread position: | 28-351 |
| Cow position: | chr12:11082336-11082670 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 241 |
| Conread position: | 28-356 |
| Cow position: | chr12:19868745-19869068 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 28-357 |
| Cow position: | chr12:44766346-44766685 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 89 |
| Conread position: | 29-355 |
| Cow position: | chr12:21304859-21304538 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 15, 66 |
| Conread position: | 30-329 |
| Cow position: | chr12:3180925-3181238 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 14, 240 |
| Conread position: | 30-355 |
| Cow position: | chr12:1994328-1993997 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 31-322 |
| Cow position: | chr12:6478927-6478620 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 42-355 |
| Cow position: | chr12:1884240-1883912 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 46-314 |
| Cow position: | chr12:32987017-32987294 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 25, 64 |
| Conread position: | 47-337 |
| Cow position: | chr12:14522939-14523240 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 62-329 |
| Cow position: | chr12:45802518-45802239 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 55, 49 |
| Conread position: | 64-363 |
| Cow position: | chr12:10461289-10461609 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 65, 290 |
| Conread position: | 67-357 |
| Cow position: | chr12:32849128-32849421 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 65, 137 |
| Conread position: | 73-329 |
| Cow position: | chr12:1476189-1475916 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 30 |
| Conread position: | 78-355 |
| Cow position: | chr12:747554-747839 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 62, 66 |
| Conread position: | 81-357 |
| Cow position: | chr12:25620079-25619807 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 150 |
| Conread position: | 85-329 |
| Cow position: | chr12:19865569-19865819 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 80, 39 |
| Conread position: | 85-355 |
| Cow position: | chr12:27094473-27094197 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 128-305 |
| Cow position: | chr12:20170008-20169830 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 73, 22 |
| Conread position: | 128-372 |
| Cow position: | chr12:10799035-10798797 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 75, 86 |
| Conread position: | 130-320 |
| Cow position: | chr12:3038886-3039083 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 30 |
| Conread position: | 130-355 |
| Cow position: | chr12:10189134-10188906 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 88, 47 |
| Conread position: | 139-328 |
| Cow position: | chr12:4004006-4003804 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 141-329 |
| Cow position: | chr12:16737985-16738181 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 69, 127 |
| Conread position: | 160-336 |
| Cow position: | chr12:18587865-18588050 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 170 |
| Conread position: | 165-351 |
| Cow position: | chr12:27039336-27039143 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 45, 167 |
| Conread position: | 175-314 |
| Cow position: | chr12:7398443-7398592 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 89 |
| Conread position: | 177-357 |
| Cow position: | chr12:27365026-27365212 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 184-357 |
| Cow position: | chr12:28650335-28650518 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 26, 151 |
| Conread position: | 185-356 |
| Cow position: | chr12:43945134-43944956 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 25, 156 |
| Conread position: | 194-357 |
| Cow position: | chr12:18769680-18769510 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 20, 146 |
| Conread position: | 226-355 |
| Cow position: | chr12:27109994-27110122 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 58, 105 |
| Conread position: | 226-359 |
| Cow position: | chr12:29499001-29498870 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 98 |
Show alignments to all cow chromosomes.