Cow genome map
| Conread name: | Ovi2-UMC-peov1-002-b11 |
| Conread position: | 15-320 |
| Cow position: | chr13:2951384-2951083 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 191, 9 |
| Conread position: | 23-272 |
| Cow position: | chr13:32905588-32905329 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 18, 145 |
| Conread position: | 23-357 |
| Cow position: | chr13:11290126-11290466 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 251 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 20, 61 |
| Conread position: | 26-306 |
| Cow position: | chr13:55338041-55338332 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 138 |
| Conread position: | 26-310 |
| Cow position: | chr13:12390074-12389777 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 257 |
| Conread position: | 26-310 |
| Cow position: | chr13:12978244-12977944 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 249 |
| Conread position: | 26-310 |
| Cow position: | chr13:21836993-21836702 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 262 |
| Conread position: | 26-325 |
| Cow position: | chr13:20243068-20243364 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 26-328 |
| Cow position: | chr13:2557825-2558140 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 18, 143 |
| Conread position: | 26-328 |
| Cow position: | chr13:14399771-14399455 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-328 |
| Cow position: | chr13:60967478-60967167 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 223 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 18, 193 |
| Conread position: | 26-329 |
| Cow position: | chr13:34905286-34904973 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 68 |
| Conread position: | 26-330 |
| Cow position: | chr13:16015510-16015184 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-336 |
| Cow position: | chr13:52019705-52020031 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 234 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 18, 257 |
| Conread position: | 26-353 |
| Cow position: | chr13:6601964-6602298 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 26-355 |
| Cow position: | chr13:32817379-32817037 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 246 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 93, 138 |
| Conread position: | 26-355 |
| Cow position: | chr13:46660829-46661158 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 103, 140 |
| Conread position: | 26-355 |
| Cow position: | chr13:60219397-60219733 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 47 |
| Conread position: | 26-357 |
| Cow position: | chr13:23266528-23266186 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 63 |
| Conread position: | 26-357 |
| Cow position: | chr13:32659325-32658983 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 91 |
| Conread position: | 26-357 |
| Cow position: | chr13:34190550-34190863 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 17, 67 |
| Conread position: | 26-357 |
| Cow position: | chr13:46297779-46298120 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 91 |
| Conread position: | 26-357 |
| Cow position: | chr13:51902302-51901962 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 138 |
| Conread position: | 26-357 |
| Cow position: | chr13:60695511-60695177 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 18, 80 |
| Conread position: | 26-359 |
| Cow position: | chr13:55406001-55406338 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 18, 76 |
| Conread position: | 27-331 |
| Cow position: | chr13:34375945-34375623 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 17, 90 |
| Conread position: | 27-355 |
| Cow position: | chr13:1840101-1839757 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 17, 158 |
| Conread position: | 27-355 |
| Cow position: | chr13:33299789-33299472 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 27-356 |
| Cow position: | chr13:34994258-34994582 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 47 |
| Conread position: | 28-355 |
| Cow position: | chr13:25882536-25882874 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 316 |
| Conread position: | 29-357 |
| Cow position: | chr13:32166633-32166952 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 14, 98 |
| Conread position: | 30-297 |
| Cow position: | chr13:43119969-43119686 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 14, 90 |
| Conread position: | 30-328 |
| Cow position: | chr13:34508520-34508224 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 13, 99 |
| Conread position: | 31-355 |
| Cow position: | chr13:16243919-16243589 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 13, 134 |
| Conread position: | 37-309 |
| Cow position: | chr13:15921142-15920860 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 37-331 |
| Cow position: | chr13:1012001-1011700 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 38, 134 |
| Conread position: | 38-328 |
| Cow position: | chr13:22085088-22085389 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 208 |
| Conread position: | 38-357 |
| Cow position: | chr13:1959831-1959507 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 291 |
| Conread position: | 43-329 |
| Cow position: | chr13:971224-971526 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 43-349 |
| Cow position: | chr13:36106837-36107151 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 77, 39 |
| Conread position: | 47-328 |
| Cow position: | chr13:20561755-20561469 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 82, 13 |
| Conread position: | 51-331 |
| Cow position: | chr13:4420969-4420678 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 66, 93 |
| Conread position: | 55-339 |
| Cow position: | chr13:31312496-31312777 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 78, 61 |
| Conread position: | 64-320 |
| Cow position: | chr13:9734596-9734328 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 199 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 9, 152 |
| Conread position: | 70-357 |
| Cow position: | chr13:9803704-9803407 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 274 |
| Conread position: | 71-372 |
| Cow position: | chr13:54095489-54095186 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 159, 7 |
| Conread position: | 77-332 |
| Cow position: | chr13:37520717-37520983 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 31, 40 |
| Conread position: | 84-345 |
| Cow position: | chr13:11767338-11767612 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 41, 181 |
| Conread position: | 85-336 |
| Cow position: | chr13:16344318-16344067 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 44, 149 |
| Conread position: | 85-355 |
| Cow position: | chr13:47369842-47370117 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 87-329 |
| Cow position: | chr13:11148373-11148132 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 53, 145 |
| Conread position: | 98-331 |
| Cow position: | chr13:37980073-37980317 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 17, 69 |
| Conread position: | 101-329 |
| Cow position: | chr13:45072816-45073051 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 30, 80 |
| Conread position: | 104-329 |
| Cow position: | chr13:19393861-19393623 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 124-357 |
| Cow position: | chr13:19108502-19108262 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 86, 180 |
| Conread position: | 128-320 |
| Cow position: | chr13:20880074-20880275 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 128-329 |
| Cow position: | chr13:34282261-34282050 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 78, 52 |
| Conread position: | 128-330 |
| Cow position: | chr13:46985592-46985382 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 82, 150 |
| Conread position: | 129-351 |
| Cow position: | chr13:18963547-18963321 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 82, 36 |
| Conread position: | 130-327 |
| Cow position: | chr13:22117183-22116973 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 130-356 |
| Cow position: | chr13:26382641-26382879 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 49, 215 |
| Conread position: | 139-328 |
| Cow position: | chr13:21988542-21988735 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 73, 35 |
| Conread position: | 148-357 |
| Cow position: | chr13:15946094-15945869 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 150-357 |
| Cow position: | chr13:29631380-29631165 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 161-328 |
| Cow position: | chr13:22024962-22025147 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 163-354 |
| Cow position: | chr13:14104289-14104488 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 49, 177 |
| Conread position: | 164-334 |
| Cow position: | chr13:37483718-37483899 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 165-337 |
| Cow position: | chr13:41360380-41360202 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 62, 159 |
| Conread position: | 165-357 |
| Cow position: | chr13:33976212-33976012 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 49, 177 |
| Conread position: | 169-353 |
| Cow position: | chr13:39593054-39593245 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 88 |
| Conread position: | 171-355 |
| Cow position: | chr13:2559458-2559269 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 158 |
| Conread position: | 171-357 |
| Cow position: | chr13:35718081-35718280 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 174-355 |
| Cow position: | chr13:26079976-26079798 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 37, 56 |
| Conread position: | 177-345 |
| Cow position: | chr13:19396876-19396704 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 32, 54 |
| Conread position: | 183-352 |
| Cow position: | chr13:6104057-6104233 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 29, 80 |
| Conread position: | 188-357 |
| Cow position: | chr13:37461182-37461359 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 22, 153 |
| Conread position: | 189-342 |
| Cow position: | chr13:8961098-8960937 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 143 |
| Conread position: | 190-357 |
| Cow position: | chr13:60674207-60674378 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 198-357 |
| Cow position: | chr13:6945899-6945723 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 211-359 |
| Cow position: | chr13:37313067-37313221 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 119 |
| Conread position: | 219-354 |
| Cow position: | chr13:12232972-12233105 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 11 |
| Conread position: | 226-357 |
| Cow position: | chr13:23586642-23586508 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 24, 110 |
| Conread position: | 226-357 |
| Cow position: | chr13:46284115-46284247 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 226-357 |
| Cow position: | chr13:54080027-54080156 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 44 |
Show alignments to all cow chromosomes.