Cow genome map

Conread name: Ovi2-UMC-peov1-002-b11

Conread position: 10-357
Cow position: chr16:47367791-47368146 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 31

Conread position: 26-307
Cow position: chr16:46101789-46101496 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 26-309
Cow position: chr16:3338208-3338504 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 244

Conread position: 26-309
Cow position: chr16:6711671-6711966 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 205
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 18, 42

Conread position: 26-309
Cow position: chr16:24240570-24240275 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 152

Conread position: 26-309
Cow position: chr16:42745654-42745354 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 214
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 18, 0

Conread position: 26-310
Cow position: chr16:46385718-46385421 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 213
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 18, 240

Conread position: 26-320
Cow position: chr16:40284227-40284535 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 209
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 40

Conread position: 26-328
Cow position: chr16:2480325-2480013 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 77

Conread position: 26-328
Cow position: chr16:3148209-3147895 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 37

Conread position: 26-328
Cow position: chr16:4756840-4757154 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 226
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 18, 138

Conread position: 26-329
Cow position: chr16:11100496-11100179 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 88

Conread position: 26-329
Cow position: chr16:42733462-42733143 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 227
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 18, 0

Conread position: 26-329
Cow position: chr16:49253432-49253122 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 67

Conread position: 26-329
Cow position: chr16:50712609-50712292 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 226
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 18, 0

Conread position: 26-329
Cow position: chr16:51235378-51235066 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 223
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 15, 37

Conread position: 26-331
Cow position: chr16:674795-675119 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 88

Conread position: 26-331
Cow position: chr16:42970632-42970314 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 228
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 18, 257

Conread position: 26-331
Cow position: chr16:51500228-51500551 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 121

Conread position: 26-331
Cow position: chr16:53622012-53621693 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 172

Conread position: 26-332
Cow position: chr16:47242252-47242572 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 228
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 17, 309

Conread position: 26-336
Cow position: chr16:5350678-5350355 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 242

Conread position: 26-336
Cow position: chr16:21096201-21095861 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 239
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 17, 0

Conread position: 26-351
Cow position: chr16:5632160-5631822 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 232
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 18, 114

Conread position: 26-355
Cow position: chr16:15094361-15094020 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 96

Conread position: 26-355
Cow position: chr16:38177594-38177932 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 19

Conread position: 26-355
Cow position: chr16:40271358-40271690 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 117

Conread position: 26-355
Cow position: chr16:46223675-46223342 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 235
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 18, 174

Conread position: 26-357
Cow position: chr16:32838240-32837898 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 53

Conread position: 26-357
Cow position: chr16:43813382-43813721 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 105

Conread position: 26-357
Cow position: chr16:45654745-45654398 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 275

Conread position: 26-357
Cow position: chr16:54294309-54294642 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 89

Conread position: 26-358
Cow position: chr16:5416445-5416118 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 187

Conread position: 26-362
Cow position: chr16:18948906-18949260 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 177

Conread position: 26-381
Cow position: chr16:51042931-51043298 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 319

Conread position: 27-335
Cow position: chr16:44676185-44676512 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 234
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 17, 242

Conread position: 27-355
Cow position: chr16:11054801-11055132 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 242
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 17, 84

Conread position: 28-355
Cow position: chr16:43851525-43851191 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 234
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 17, 106

Conread position: 28-357
Cow position: chr16:11007544-11007897 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 256
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 16, 321

Conread position: 29-357
Cow position: chr16:25174067-25174407 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 316

Conread position: 30-355
Cow position: chr16:30052772-30053104 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 69

Conread position: 30-355
Cow position: chr16:55774874-55775211 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 138

Conread position: 30-357
Cow position: chr16:13791834-13792168 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 53

Conread position: 30-357
Cow position: chr16:20259728-20260064 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 105

Conread position: 38-327
Cow position: chr16:51104134-51104433 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 206
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 122, 34

Conread position: 38-328
Cow position: chr16:42219856-42219557 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 214
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 91, 128

Conread position: 38-329
Cow position: chr16:7457134-7456841 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 10

Conread position: 38-331
Cow position: chr16:22825331-22825032 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 219
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 172, 88

Conread position: 38-356
Cow position: chr16:30516582-30516257 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 254

Conread position: 38-357
Cow position: chr16:13601776-13601447 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 34

Conread position: 38-365
Cow position: chr16:46254409-46254064 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 0

Conread position: 39-309
Cow position: chr16:25454632-25454352 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 208
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 90, 241

Conread position: 41-387
Cow position: chr16:11523636-11523287 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 241

Conread position: 45-331
Cow position: chr16:35344125-35343830 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 72, 66

Conread position: 46-354
Cow position: chr16:6265619-6265309 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 221
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 68, 111

Conread position: 47-357
Cow position: chr16:15676729-15677043 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 26

Conread position: 52-331
Cow position: chr16:13697835-13698121 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 113, 144

Conread position: 53-353
Cow position: chr16:29206133-29205819 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 227
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 6, 294

Conread position: 61-328
Cow position: chr16:29078738-29078460 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 198
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 69, 220

Conread position: 63-326
Cow position: chr16:55109799-55109529 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 196
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 70, 9

Conread position: 63-355
Cow position: chr16:14441235-14441525 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 209
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 66, 76

Conread position: 65-329
Cow position: chr16:46654490-46654767 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 64, 13

Conread position: 67-309
Cow position: chr16:17143148-17143400 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 189
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 62, 200

Conread position: 68-357
Cow position: chr16:28112576-28112279 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 93

Conread position: 68-357
Cow position: chr16:50113033-50113331 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 217
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 63, 274

Conread position: 77-357
Cow position: chr16:18426534-18426816 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 52, 88

Conread position: 78-357
Cow position: chr16:498449-498730 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 200
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 132, 36

Conread position: 85-309
Cow position: chr16:14351565-14351332 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 44, 116

Conread position: 85-329
Cow position: chr16:45562567-45562815 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 172
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 44, 195

Conread position: 85-358
Cow position: chr16:659453-659730 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 44, 80

Conread position: 91-355
Cow position: chr16:23991119-23990852 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 191
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 73

Conread position: 92-328
Cow position: chr16:21721455-21721208 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 37, 188

Conread position: 92-361
Cow position: chr16:31974386-31974120 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 37, 73

Conread position: 118-355
Cow position: chr16:19152074-19152318 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 49, 172

Conread position: 127-329
Cow position: chr16:4979084-4979294 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 103, 0

Conread position: 128-328
Cow position: chr16:8651762-8651972 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 79, 133

Conread position: 128-329
Cow position: chr16:31978782-31978573 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 78, 46

Conread position: 130-336
Cow position: chr16:18693826-18693615 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 99, 80

Conread position: 130-355
Cow position: chr16:16057757-16057519 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 32, 207

Conread position: 130-357
Cow position: chr16:16605709-16605941 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 81, 148

Conread position: 132-329
Cow position: chr16:42092966-42092759 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 78, 134

Conread position: 139-329
Cow position: chr16:41590205-41590403 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 71, 37

Conread position: 139-335
Cow position: chr16:20662552-20662758 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 76, 0

Conread position: 139-380
Cow position: chr16:53267133-53267379 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 187
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 63, 131

Conread position: 153-356
Cow position: chr16:48087441-48087235 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 26

Conread position: 160-350
Cow position: chr16:53892672-53892467 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 50, 188

Conread position: 164-331
Cow position: chr16:31558334-31558511 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 42, 107

Conread position: 165-357
Cow position: chr16:27004589-27004792 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 41, 102

Conread position: 169-357
Cow position: chr16:29654767-29654963 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 173

Conread position: 171-357
Cow position: chr16:29094117-29094312 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 171

Conread position: 172-343
Cow position: chr16:37442693-37442513 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 13

Conread position: 174-328
Cow position: chr16:41895809-41895975 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 185-328
Cow position: chr16:28431805-28431651 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 189-354
Cow position: chr16:12244138-12243968 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 21, 7

Conread position: 219-357
Cow position: chr16:44899218-44899080 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 64, 106

Conread position: 226-351
Cow position: chr16:23800106-23799982 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 104
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 57, 97

Conread position: 226-357
Cow position: chr16:56533379-56533508 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 105, 0

Conread position: 241-357
Cow position: chr16:18051617-18051728 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 42, 16

Show alignments to all cow chromosomes.