Cow genome map
| Conread name: | Ovi2-UMC-peov1-002-b11 |
| Conread position: | 26-309 |
| Cow position: | chr17:28024499-28024205 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-322 |
| Cow position: | chr17:36747131-36746821 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 8, 36 |
| Conread position: | 26-328 |
| Cow position: | chr17:2584042-2584357 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 26-328 |
| Cow position: | chr17:16463771-16463459 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 91 |
| Conread position: | 26-328 |
| Cow position: | chr17:18828752-18828436 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-328 |
| Cow position: | chr17:34317374-34317061 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 223 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-328 |
| Cow position: | chr17:36313377-36313698 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 18, 171 |
| Conread position: | 26-329 |
| Cow position: | chr17:33289307-33288998 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 26-331 |
| Cow position: | chr17:50714-50406 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 26-331 |
| Cow position: | chr17:29471820-29472140 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-332 |
| Cow position: | chr17:15351446-15351759 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 107, 15 |
| Conread position: | 26-336 |
| Cow position: | chr17:3131397-3131723 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 16, 88 |
| Conread position: | 26-337 |
| Cow position: | chr17:44223895-44224227 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 18, 92 |
| Conread position: | 26-350 |
| Cow position: | chr17:38876840-38877156 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 26-353 |
| Cow position: | chr17:36817256-36817587 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 261 |
| Conread position: | 26-357 |
| Cow position: | chr17:2006040-2006379 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 135 |
| Conread position: | 26-357 |
| Cow position: | chr17:5748462-5748124 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 33 |
| Conread position: | 26-357 |
| Cow position: | chr17:44233744-44233401 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 319 |
| Conread position: | 26-380 |
| Cow position: | chr17:28539381-28539739 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 26-428 |
| Cow position: | chr17:36317431-36317863 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 171 |
| Conread position: | 27-355 |
| Cow position: | chr17:35180142-35180480 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 27-357 |
| Cow position: | chr17:7615298-7614966 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 207 |
| Conread position: | 28-353 |
| Cow position: | chr17:41892988-41892667 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 103 |
| Conread position: | 30-355 |
| Cow position: | chr17:27978500-27978831 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 31 |
| Conread position: | 31-351 |
| Cow position: | chr17:2179223-2179546 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 265 |
| Conread position: | 37-351 |
| Cow position: | chr17:13716899-13716581 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 92, 178 |
| Conread position: | 37-353 |
| Cow position: | chr17:6995647-6995967 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 74 |
| Conread position: | 39-357 |
| Cow position: | chr17:24293516-24293828 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 42 |
| Conread position: | 40-329 |
| Cow position: | chr17:40802172-40802468 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 89, 135 |
| Conread position: | 43-328 |
| Cow position: | chr17:26803455-26803160 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 138 |
| Conread position: | 45-357 |
| Cow position: | chr17:2270127-2270444 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 40 |
| Conread position: | 61-309 |
| Cow position: | chr17:17128540-17128782 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 222, 132 |
| Conread position: | 61-357 |
| Cow position: | chr17:29898009-29898310 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 68, 98 |
| Conread position: | 70-331 |
| Cow position: | chr17:37415479-37415208 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 70-355 |
| Cow position: | chr17:18242380-18242660 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 62, 14 |
| Conread position: | 84-329 |
| Cow position: | chr17:28830690-28830939 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 45, 159 |
| Conread position: | 85-329 |
| Cow position: | chr17:20358282-20358535 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 44, 195 |
| Conread position: | 85-336 |
| Cow position: | chr17:24553415-24553667 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 90, 30 |
| Conread position: | 87-355 |
| Cow position: | chr17:728880-728597 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 42, 74 |
| Conread position: | 91-309 |
| Cow position: | chr17:20271943-20271720 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 185 |
| Conread position: | 91-355 |
| Cow position: | chr17:6967566-6967297 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 123, 37 |
| Conread position: | 105-310 |
| Cow position: | chr17:33059136-33058921 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 25, 166 |
| Conread position: | 118-328 |
| Cow position: | chr17:30664711-30664931 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 119-320 |
| Cow position: | chr17:15187816-15187608 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 47 |
| Conread position: | 128-329 |
| Cow position: | chr17:4602094-4601886 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 82, 65 |
| Conread position: | 130-330 |
| Cow position: | chr17:33534989-33534776 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 135 |
| Conread position: | 131-357 |
| Cow position: | chr17:8926788-8926552 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 7, 204 |
| Conread position: | 146-329 |
| Cow position: | chr17:20912067-20912260 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 146-331 |
| Cow position: | chr17:38832524-38832712 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 64, 14 |
| Conread position: | 148-357 |
| Cow position: | chr17:33385870-33386077 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 62, 83 |
| Conread position: | 152-329 |
| Cow position: | chr17:3470902-3471087 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 58, 8 |
| Conread position: | 164-356 |
| Cow position: | chr17:32280392-32280201 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 174 |
| Conread position: | 171-330 |
| Cow position: | chr17:13673941-13673775 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 171-367 |
| Cow position: | chr17:3466071-3466274 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 39, 119 |
| Conread position: | 173-353 |
| Cow position: | chr17:27698212-27698020 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 164 |
| Conread position: | 187-357 |
| Cow position: | chr17:25341030-25340853 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 23, 93 |
| Conread position: | 226-357 |
| Cow position: | chr17:5361505-5361374 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 99 |
| Conread position: | 226-357 |
| Cow position: | chr17:25755330-25755460 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 226-427 |
| Cow position: | chr17:17683797-17683599 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 57, 35 |
| Conread position: | 240-357 |
| Cow position: | chr17:3042055-3042171 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 43, 84 |
| Conread position: | 242-357 |
| Cow position: | chr17:9060451-9060336 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 82 |
Show alignments to all cow chromosomes.