Cow genome map

Conread name: Ovi2-UMC-peov1-002-b11

Conread position: 10-337
Cow position: chr20:39875960-39875627 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 199
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 110, 75

Conread position: 10-354
Cow position: chr20:3451863-3452205 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 241
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 17, 58

Conread position: 16-309
Cow position: chr20:13653773-13653468 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 266

Conread position: 26-306
Cow position: chr20:19845346-19845637 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 91, 85

Conread position: 26-307
Cow position: chr20:28560312-28560020 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 208
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 18, 155

Conread position: 26-309
Cow position: chr20:12567738-12567449 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 220
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 18, 71

Conread position: 26-328
Cow position: chr20:3294419-3294101 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 228
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 18, 88

Conread position: 26-328
Cow position: chr20:7994958-7994642 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 91

Conread position: 26-328
Cow position: chr20:20779198-20778882 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 225
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 18, 290

Conread position: 26-328
Cow position: chr20:27877065-27877381 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 257

Conread position: 26-329
Cow position: chr20:6055141-6054824 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 222
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 18, 91

Conread position: 26-331
Cow position: chr20:6501155-6501460 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 214
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 18, 94

Conread position: 26-331
Cow position: chr20:20353564-20353254 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 224
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 18, 65

Conread position: 26-331
Cow position: chr20:22006798-22007116 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 140

Conread position: 26-331
Cow position: chr20:24399284-24398966 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 257

Conread position: 26-336
Cow position: chr20:31076882-31077200 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 230
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 18, 126

Conread position: 26-340
Cow position: chr20:16942062-16941737 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 228
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 18, 85

Conread position: 26-355
Cow position: chr20:7803867-7803530 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 307

Conread position: 26-355
Cow position: chr20:7933286-7933630 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 253

Conread position: 26-355
Cow position: chr20:19352425-19352085 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 88

Conread position: 26-355
Cow position: chr20:35133298-35133634 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 250
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 18, 36

Conread position: 26-355
Cow position: chr20:39044070-39043733 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 235
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 8, 87

Conread position: 26-357
Cow position: chr20:27565367-27565699 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 58

Conread position: 26-357
Cow position: chr20:33180895-33180552 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 237

Conread position: 26-357
Cow position: chr20:41110845-41110512 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 233
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 18, 57

Conread position: 26-359
Cow position: chr20:13574969-13574629 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 254
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 9, 34

Conread position: 26-359
Cow position: chr20:13817212-13817531 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 231
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 112, 41

Conread position: 26-359
Cow position: chr20:25274870-25274535 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 250
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 18, 163

Conread position: 26-365
Cow position: chr20:36418144-36417801 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 259
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 18, 61

Conread position: 27-329
Cow position: chr20:4945902-4945587 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 228
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 17, 81

Conread position: 27-356
Cow position: chr20:32938872-32939204 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 151

Conread position: 28-329
Cow position: chr20:12783013-12783329 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 225
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 12, 85

Conread position: 28-339
Cow position: chr20:5785959-5786282 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 317

Conread position: 28-357
Cow position: chr20:18490532-18490871 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 83

Conread position: 30-329
Cow position: chr20:1744878-1745186 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 220
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 14, 71

Conread position: 31-306
Cow position: chr20:30488357-30488648 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 13, 273

Conread position: 31-355
Cow position: chr20:14472865-14472533 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 244
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 13, 142

Conread position: 34-338
Cow position: chr20:21398403-21398708 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 217
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 10, 76

Conread position: 37-314
Cow position: chr20:5795362-5795649 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 213
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 54, 62

Conread position: 37-357
Cow position: chr20:34375569-34375900 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 70

Conread position: 38-328
Cow position: chr20:35970302-35970602 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 214
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 94, 9

Conread position: 38-365
Cow position: chr20:35973026-35972695 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 118

Conread position: 39-336
Cow position: chr20:9432969-9433277 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 90, 0

Conread position: 43-329
Cow position: chr20:14806250-14806543 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 214
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 89, 226

Conread position: 43-331
Cow position: chr20:41308662-41308953 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 210
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 77, 16

Conread position: 46-336
Cow position: chr20:1580918-1580617 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 215
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 83, 0

Conread position: 58-357
Cow position: chr20:38028626-38028315 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 276

Conread position: 76-355
Cow position: chr20:17831237-17831522 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 210
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 53, 106

Conread position: 87-328
Cow position: chr20:7757221-7756969 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 42, 193

Conread position: 101-328
Cow position: chr20:34202067-34202306 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 16, 0

Conread position: 125-357
Cow position: chr20:8890995-8891227 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 177
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 87, 55

Conread position: 128-329
Cow position: chr20:8910357-8910563 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 82, 56

Conread position: 128-357
Cow position: chr20:20360368-20360130 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 181
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 87, 213

Conread position: 128-359
Cow position: chr20:20471168-20471403 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 82, 75

Conread position: 137-310
Cow position: chr20:4950137-4949955 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 73, 142

Conread position: 138-355
Cow position: chr20:25686887-25686659 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 173
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 77, 8

Conread position: 139-357
Cow position: chr20:7527904-7527681 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 77, 25

Conread position: 147-352
Cow position: chr20:13659860-13659650 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 163
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 34, 20

Conread position: 156-357
Cow position: chr20:13955515-13955723 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 163
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 58, 184

Conread position: 165-355
Cow position: chr20:4895411-4895219 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 149
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 50, 8

Conread position: 166-357
Cow position: chr20:12442210-12442012 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 44, 30

Conread position: 171-355
Cow position: chr20:19667428-19667619 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 109

Conread position: 171-362
Cow position: chr20:8869792-8869591 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 36, 163

Conread position: 180-329
Cow position: chr20:6096984-6096826 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 84

Conread position: 185-357
Cow position: chr20:42137892-42138070 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 11

Conread position: 212-357
Cow position: chr20:25293100-25293245 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 17, 80

Show alignments to all cow chromosomes.