Cow genome map
| Conread name: | Ovi2-UMC-peov1-002-b11 |
| Conread position: | 11-327 |
| Cow position: | chr21:48646434-48646114 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 106, 93 |
| Conread position: | 15-329 |
| Cow position: | chr21:42390845-42390523 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 9, 73 |
| Conread position: | 16-328 |
| Cow position: | chr21:16278080-16278389 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 88 |
| Conread position: | 26-310 |
| Cow position: | chr21:3496814-3496517 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 18, 265 |
| Conread position: | 26-318 |
| Cow position: | chr21:12076040-12075739 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 18, 139 |
| Conread position: | 26-328 |
| Cow position: | chr21:31664-31989 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-328 |
| Cow position: | chr21:28476987-28477303 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-329 |
| Cow position: | chr21:3586208-3585894 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 18, 240 |
| Conread position: | 26-329 |
| Cow position: | chr21:20910739-20910424 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 105 |
| Conread position: | 26-329 |
| Cow position: | chr21:29855036-29855353 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-331 |
| Cow position: | chr21:5595028-5595345 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 158 |
| Conread position: | 26-331 |
| Cow position: | chr21:13302887-13303211 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-331 |
| Cow position: | chr21:22855589-22855903 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 67 |
| Conread position: | 26-332 |
| Cow position: | chr21:23606034-23606355 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 18, 140 |
| Conread position: | 26-337 |
| Cow position: | chr21:5899046-5898723 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 137 |
| Conread position: | 26-337 |
| Cow position: | chr21:33620140-33620449 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 8, 105 |
| Conread position: | 26-351 |
| Cow position: | chr21:11083261-11082926 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 54 |
| Conread position: | 26-355 |
| Cow position: | chr21:13388513-13388840 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 255 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 17, 101 |
| Conread position: | 26-357 |
| Cow position: | chr21:48291665-48291331 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 154 |
| Conread position: | 27-329 |
| Cow position: | chr21:2366711-2367020 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 17, 87 |
| Conread position: | 27-331 |
| Cow position: | chr21:36163593-36163281 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 102, 260 |
| Conread position: | 27-343 |
| Cow position: | chr21:17207856-17208186 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 90 |
| Conread position: | 27-353 |
| Cow position: | chr21:24947739-24947404 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 27-366 |
| Cow position: | chr21:7156070-7156419 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 96 |
| Conread position: | 28-342 |
| Cow position: | chr21:37353043-37352718 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 101, 38 |
| Conread position: | 28-355 |
| Cow position: | chr21:33307662-33307992 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 246 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 16, 86 |
| Conread position: | 29-320 |
| Cow position: | chr21:31974837-31975142 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 30-355 |
| Cow position: | chr21:16167473-16167140 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 148 |
| Conread position: | 37-332 |
| Cow position: | chr21:10000906-10000608 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 95, 287 |
| Conread position: | 38-329 |
| Cow position: | chr21:1582576-1582274 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 38-329 |
| Cow position: | chr21:21908205-21907900 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 49, 74 |
| Conread position: | 38-330 |
| Cow position: | chr21:33579565-33579873 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 37, 242 |
| Conread position: | 38-331 |
| Cow position: | chr21:4279014-4279315 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 91, 125 |
| Conread position: | 38-331 |
| Cow position: | chr21:27146827-27146524 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 91, 33 |
| Conread position: | 40-322 |
| Cow position: | chr21:21076515-21076800 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 80, 74 |
| Conread position: | 43-335 |
| Cow position: | chr21:26835911-26835609 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 86, 237 |
| Conread position: | 54-353 |
| Cow position: | chr21:34738910-34739220 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 107 |
| Conread position: | 55-310 |
| Cow position: | chr21:33997827-33997565 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 77, 18 |
| Conread position: | 58-329 |
| Cow position: | chr21:38450286-38450003 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 66-355 |
| Cow position: | chr21:19436998-19436701 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 63, 257 |
| Conread position: | 66-358 |
| Cow position: | chr21:8126376-8126086 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 146, 61 |
| Conread position: | 67-355 |
| Cow position: | chr21:6297350-6297655 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 62, 268 |
| Conread position: | 70-352 |
| Cow position: | chr21:45780853-45780569 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 112 |
| Conread position: | 75-336 |
| Cow position: | chr21:2927818-2927549 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 194 |
| Conread position: | 78-355 |
| Cow position: | chr21:22097988-22098262 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 128, 20 |
| Conread position: | 83-337 |
| Cow position: | chr21:37122647-37122383 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 84-329 |
| Cow position: | chr21:44657744-44657997 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 45, 86 |
| Conread position: | 85-329 |
| Cow position: | chr21:21427858-21428115 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 46, 131 |
| Conread position: | 92-343 |
| Cow position: | chr21:2261251-2260990 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 38, 242 |
| Conread position: | 98-355 |
| Cow position: | chr21:23500564-23500308 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 104, 126 |
| Conread position: | 98-357 |
| Cow position: | chr21:45643436-45643182 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 128-328 |
| Cow position: | chr21:46132527-46132318 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 90, 18 |
| Conread position: | 128-329 |
| Cow position: | chr21:24418493-24418304 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 155, 32 |
| Conread position: | 128-357 |
| Cow position: | chr21:23489863-23489623 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 84, 46 |
| Conread position: | 128-380 |
| Cow position: | chr21:31661524-31661780 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 199 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 82, 214 |
| Conread position: | 129-388 |
| Cow position: | chr21:30151155-30150891 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 86, 59 |
| Conread position: | 139-357 |
| Cow position: | chr21:12325527-12325738 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 75, 133 |
| Conread position: | 139-357 |
| Cow position: | chr21:44219708-44219934 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 71, 202 |
| Conread position: | 141-350 |
| Cow position: | chr21:24086099-24085883 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 38, 133 |
| Conread position: | 141-355 |
| Cow position: | chr21:1590742-1590965 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 69, 107 |
| Conread position: | 155-357 |
| Cow position: | chr21:47823777-47823568 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 57, 185 |
| Conread position: | 160-328 |
| Cow position: | chr21:22464289-22464468 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 167-357 |
| Cow position: | chr21:32929716-32929517 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 31, 167 |
| Conread position: | 189-329 |
| Cow position: | chr21:20925976-20925826 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 193-431 |
| Cow position: | chr21:40265178-40265414 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 13, 140 |
| Conread position: | 226-350 |
| Cow position: | chr21:8420244-8420368 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 100 |
| Conread position: | 226-357 |
| Cow position: | chr21:11676690-11676559 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 44 |
| Conread position: | 226-357 |
| Cow position: | chr21:45355012-45355142 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 57, 106 |
| Conread position: | 226-359 |
| Cow position: | chr21:31661282-31661411 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 9 |
| Conread position: | 226-365 |
| Cow position: | chr21:49662846-49662708 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 95 |
| Conread position: | 227-329 |
| Cow position: | chr21:297299-297402 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 36 |
Show alignments to all cow chromosomes.