Cow genome map
| Conread name: | Ovi2-UMC-peov1-002-b11 |
| Conread position: | 8-338 |
| Cow position: | chr29:13107622-13107959 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 23-327 |
| Cow position: | chr29:4490020-4490331 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 84 |
| Conread position: | 26-309 |
| Cow position: | chr29:528987-528696 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 91 |
| Conread position: | 26-310 |
| Cow position: | chr29:1478981-1479278 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 257 |
| Conread position: | 26-327 |
| Cow position: | chr29:15918914-15919222 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 18, 258 |
| Conread position: | 26-328 |
| Cow position: | chr29:2484601-2484285 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-328 |
| Cow position: | chr29:4610891-4611207 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 251 |
| Conread position: | 26-329 |
| Cow position: | chr29:14116344-14116659 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 106, 268 |
| Conread position: | 26-329 |
| Cow position: | chr29:18365096-18364794 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 18, 76 |
| Conread position: | 26-331 |
| Cow position: | chr29:13640051-13639737 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 19, 138 |
| Conread position: | 26-336 |
| Cow position: | chr29:15762200-15762530 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 319 |
| Conread position: | 26-339 |
| Cow position: | chr29:12875693-12876021 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 18, 310 |
| Conread position: | 26-349 |
| Cow position: | chr29:34535913-34535598 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 18, 48 |
| Conread position: | 26-354 |
| Cow position: | chr29:44607876-44607536 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 26-355 |
| Cow position: | chr29:649567-649900 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 71 |
| Conread position: | 26-355 |
| Cow position: | chr29:2483026-2482686 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 312 |
| Conread position: | 26-355 |
| Cow position: | chr29:4755718-4755390 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 20, 50 |
| Conread position: | 26-357 |
| Cow position: | chr29:7664472-7664127 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 18, 201 |
| Conread position: | 26-357 |
| Cow position: | chr29:17135070-17135413 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 262 |
| Conread position: | 26-357 |
| Cow position: | chr29:29056482-29056817 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 89 |
| Conread position: | 26-357 |
| Cow position: | chr29:32644208-32644549 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 152 |
| Conread position: | 26-359 |
| Cow position: | chr29:6150769-6150425 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 95 |
| Conread position: | 26-361 |
| Cow position: | chr29:38247456-38247107 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 313 |
| Conread position: | 26-366 |
| Cow position: | chr29:37451610-37451958 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 105 |
| Conread position: | 28-329 |
| Cow position: | chr29:11136578-11136273 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 17, 102 |
| Conread position: | 28-338 |
| Cow position: | chr29:13590411-13590090 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 16, 316 |
| Conread position: | 28-351 |
| Cow position: | chr29:21535383-21535057 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 28-357 |
| Cow position: | chr29:17153782-17154119 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 89 |
| Conread position: | 28-362 |
| Cow position: | chr29:8136954-8136607 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 46 |
| Conread position: | 29-357 |
| Cow position: | chr29:13058236-13058575 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 15, 307 |
| Conread position: | 38-328 |
| Cow position: | chr29:29505839-29505543 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 91, 23 |
| Conread position: | 38-329 |
| Cow position: | chr29:32175801-32176104 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 214 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 38-342 |
| Cow position: | chr29:21546202-21545898 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 174, 21 |
| Conread position: | 38-357 |
| Cow position: | chr29:29303589-29303261 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 89, 11 |
| Conread position: | 40-357 |
| Cow position: | chr29:11695850-11696174 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 31 |
| Conread position: | 43-328 |
| Cow position: | chr29:24080248-24080537 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 167, 83 |
| Conread position: | 44-332 |
| Cow position: | chr29:18212679-18212377 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 85, 96 |
| Conread position: | 45-328 |
| Cow position: | chr29:31594746-31594455 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 74, 47 |
| Conread position: | 45-354 |
| Cow position: | chr29:39332257-39331945 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 83, 41 |
| Conread position: | 46-425 |
| Cow position: | chr29:19124442-19124820 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 120 |
| Conread position: | 47-328 |
| Cow position: | chr29:406941-406650 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 47-329 |
| Cow position: | chr29:34746326-34746040 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 86, 28 |
| Conread position: | 53-328 |
| Cow position: | chr29:9799898-9800184 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 67, 61 |
| Conread position: | 53-354 |
| Cow position: | chr29:23988119-23988430 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 65, 80 |
| Conread position: | 58-355 |
| Cow position: | chr29:16662385-16662681 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 71, 102 |
| Conread position: | 72-343 |
| Cow position: | chr29:30391946-30391669 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 78-354 |
| Cow position: | chr29:1956738-1956453 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 265 |
| Conread position: | 81-352 |
| Cow position: | chr29:25478730-25479009 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 59, 190 |
| Conread position: | 82-331 |
| Cow position: | chr29:21443988-21443730 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 124, 46 |
| Conread position: | 83-328 |
| Cow position: | chr29:961284-961536 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 127, 177 |
| Conread position: | 87-329 |
| Cow position: | chr29:15902926-15902676 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 76, 34 |
| Conread position: | 99-326 |
| Cow position: | chr29:23239887-23240126 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 103-365 |
| Cow position: | chr29:40300590-40300325 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 16, 11 |
| Conread position: | 128-329 |
| Cow position: | chr29:14050806-14050600 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 90, 160 |
| Conread position: | 128-331 |
| Cow position: | chr29:11684406-11684617 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 82, 32 |
| Conread position: | 129-314 |
| Cow position: | chr29:18528335-18528138 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 143-356 |
| Cow position: | chr29:7799227-7799449 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 162 |
| Conread position: | 151-357 |
| Cow position: | chr29:13127679-13127473 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 61, 138 |
| Conread position: | 162-355 |
| Cow position: | chr29:15756841-15757040 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 27 |
| Conread position: | 165-356 |
| Cow position: | chr29:37719350-37719545 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 47, 81 |
| Conread position: | 168-355 |
| Cow position: | chr29:18360655-18360470 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 104, 48 |
| Conread position: | 182-353 |
| Cow position: | chr29:799041-798862 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 28, 159 |
| Conread position: | 189-357 |
| Cow position: | chr29:21626982-21627164 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 197-382 |
| Cow position: | chr29:17667965-17668162 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 176 |
| Conread position: | 227-376 |
| Cow position: | chr29:12901590-12901439 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 41, 106 |
| Conread position: | 236-357 |
| Cow position: | chr29:32808943-32809063 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 260-357 |
| Cow position: | chr29:34736909-34736813 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 23, 63 |
Show alignments to all cow chromosomes.