Cow genome map
| Conread name: | Ovi2-UMC-peov1-002-b11 |
| Conread position: | 10-357 |
| Cow position: | chr4:41602136-41602506 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 268 |
| Conread position: | 15-326 |
| Cow position: | chr4:7329463-7329143 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 16-328 |
| Cow position: | chr4:18845031-18845356 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 16-331 |
| Cow position: | chr4:13143239-13142913 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 97 |
| Conread position: | 18-329 |
| Cow position: | chr4:67600438-67600114 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 278 |
| Conread position: | 23-314 |
| Cow position: | chr4:8858521-8858826 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 108, 24 |
| Conread position: | 26-309 |
| Cow position: | chr4:27178076-27178368 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 135 |
| Conread position: | 26-309 |
| Cow position: | chr4:34209344-34209623 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 26-309 |
| Cow position: | chr4:36899625-36899921 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 217 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 18, 247 |
| Conread position: | 26-309 |
| Cow position: | chr4:61242527-61242814 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 26-310 |
| Cow position: | chr4:29833871-29834168 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-310 |
| Cow position: | chr4:38153011-38152712 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-328 |
| Cow position: | chr4:2263462-2263146 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 228 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 18, 247 |
| Conread position: | 26-328 |
| Cow position: | chr4:3269012-3268699 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 18, 55 |
| Conread position: | 26-328 |
| Cow position: | chr4:4185416-4185729 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 18, 220 |
| Conread position: | 26-328 |
| Cow position: | chr4:11376428-11376741 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 18, 88 |
| Conread position: | 26-328 |
| Cow position: | chr4:22014175-22013860 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 247 |
| Conread position: | 26-328 |
| Cow position: | chr4:30690042-30690346 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 18, 91 |
| Conread position: | 26-328 |
| Cow position: | chr4:65918921-65919231 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 26-328 |
| Cow position: | chr4:66532819-66533136 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 18, 107 |
| Conread position: | 26-329 |
| Cow position: | chr4:19264913-19265223 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 68 |
| Conread position: | 26-329 |
| Cow position: | chr4:34223182-34223500 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-329 |
| Cow position: | chr4:67517814-67517513 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 186, 15 |
| Conread position: | 26-331 |
| Cow position: | chr4:68944883-68944566 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 26-332 |
| Cow position: | chr4:22237176-22236865 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 26-334 |
| Cow position: | chr4:8559063-8558751 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 18, 88 |
| Conread position: | 26-343 |
| Cow position: | chr4:9821386-9821695 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 18, 44 |
| Conread position: | 26-353 |
| Cow position: | chr4:21073888-21073546 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 322 |
| Conread position: | 26-354 |
| Cow position: | chr4:61625336-61625001 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 86 |
| Conread position: | 26-355 |
| Cow position: | chr4:11107837-11107496 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 250 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 18, 57 |
| Conread position: | 26-355 |
| Cow position: | chr4:46682951-46682627 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 12, 155 |
| Conread position: | 26-356 |
| Cow position: | chr4:25972184-25972526 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 309 |
| Conread position: | 26-357 |
| Cow position: | chr4:489193-488860 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 246 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 17, 85 |
| Conread position: | 26-357 |
| Cow position: | chr4:23853490-23853833 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 311 |
| Conread position: | 26-357 |
| Cow position: | chr4:58835106-58834771 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 9 |
| Conread position: | 26-357 |
| Cow position: | chr4:59889315-59888971 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 313 |
| Conread position: | 27-327 |
| Cow position: | chr4:37786549-37786864 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 17, 243 |
| Conread position: | 27-332 |
| Cow position: | chr4:41097217-41097523 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 208 |
| Conread position: | 27-355 |
| Cow position: | chr4:54147183-54146862 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 16, 87 |
| Conread position: | 28-355 |
| Cow position: | chr4:39645985-39646326 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 273 |
| Conread position: | 29-357 |
| Cow position: | chr4:3474922-3475246 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 182 |
| Conread position: | 30-328 |
| Cow position: | chr4:19096617-19096905 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 87, 81 |
| Conread position: | 30-357 |
| Cow position: | chr4:34181506-34181174 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 36-329 |
| Cow position: | chr4:51740432-51740130 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 91, 256 |
| Conread position: | 37-329 |
| Cow position: | chr4:39457932-39458234 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 233 |
| Conread position: | 37-331 |
| Cow position: | chr4:34172266-34171959 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 38-327 |
| Cow position: | chr4:34492487-34492189 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 89, 133 |
| Conread position: | 38-329 |
| Cow position: | chr4:64791205-64791496 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 68, 125 |
| Conread position: | 39-357 |
| Cow position: | chr4:10017268-10016946 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 171, 16 |
| Conread position: | 40-357 |
| Cow position: | chr4:27186262-27185944 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 30 |
| Conread position: | 40-357 |
| Cow position: | chr4:36755029-36755351 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 84 |
| Conread position: | 46-365 |
| Cow position: | chr4:25734797-25735123 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 44 |
| Conread position: | 53-331 |
| Cow position: | chr4:2680699-2680992 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 55-327 |
| Cow position: | chr4:48798378-48798092 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 83, 131 |
| Conread position: | 56-357 |
| Cow position: | chr4:13877519-13877827 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 7 |
| Conread position: | 63-331 |
| Cow position: | chr4:49814673-49814404 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 69, 107 |
| Conread position: | 67-357 |
| Cow position: | chr4:962303-962022 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 65, 87 |
| Conread position: | 68-355 |
| Cow position: | chr4:2122053-2121766 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 60, 54 |
| Conread position: | 72-357 |
| Cow position: | chr4:26374588-26374303 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 68 |
| Conread position: | 76-330 |
| Cow position: | chr4:34044420-34044157 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 85-332 |
| Cow position: | chr4:52980518-52980774 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 91-357 |
| Cow position: | chr4:24414603-24414882 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 56, 247 |
| Conread position: | 92-355 |
| Cow position: | chr4:28400041-28399771 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 94-331 |
| Cow position: | chr4:11872547-11872303 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 37, 112 |
| Conread position: | 100-329 |
| Cow position: | chr4:19492889-19493127 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 120-343 |
| Cow position: | chr4:61673634-61673405 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 86, 10 |
| Conread position: | 135-355 |
| Cow position: | chr4:61235568-61235349 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 93, 25 |
| Conread position: | 139-335 |
| Cow position: | chr4:29035327-29035532 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 139-357 |
| Cow position: | chr4:40576502-40576278 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 90, 181 |
| Conread position: | 141-355 |
| Cow position: | chr4:44645818-44645596 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 65, 200 |
| Conread position: | 143-329 |
| Cow position: | chr4:36892760-36892964 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 150-329 |
| Cow position: | chr4:13589514-13589703 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 155-337 |
| Cow position: | chr4:22073878-22073688 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 63, 126 |
| Conread position: | 165-331 |
| Cow position: | chr4:14755042-14754880 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 66 |
| Conread position: | 165-357 |
| Cow position: | chr4:32770513-32770311 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 170-357 |
| Cow position: | chr4:8068273-8068468 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 42, 171 |
| Conread position: | 171-329 |
| Cow position: | chr4:44262918-44263086 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 171-357 |
| Cow position: | chr4:37878867-37879068 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 183-355 |
| Cow position: | chr4:48119215-48119046 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 33 |
| Conread position: | 184-355 |
| Cow position: | chr4:28378198-28378017 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 209-357 |
| Cow position: | chr4:48499305-48499460 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 68 |
| Conread position: | 226-355 |
| Cow position: | chr4:22528902-22528772 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 58, 79 |
| Conread position: | 226-357 |
| Cow position: | chr4:60030246-60030375 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 57, 97 |
| Conread position: | 228-357 |
| Cow position: | chr4:33030017-33030145 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 94 |
| Conread position: | 229-357 |
| Cow position: | chr4:24020707-24020580 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 54, 103 |
Show alignments to all cow chromosomes.