Cow genome map

Conread name: Ovi2-UMC-peov1-002-b11

Conread position: 22-359
Cow position: chr5:54089039-54089374 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 246
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 22, 55

Conread position: 24-330
Cow position: chr5:55757114-55756797 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 76

Conread position: 26-306
Cow position: chr5:10542327-10542036 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 18, 38

Conread position: 26-309
Cow position: chr5:46235484-46235188 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 210
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 18, 118

Conread position: 26-309
Cow position: chr5:53005910-53005614 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 215
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 18, 257

Conread position: 26-310
Cow position: chr5:10261075-10260779 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 217
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 18, 70

Conread position: 26-310
Cow position: chr5:58538696-58538992 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 210
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 19, 160

Conread position: 26-327
Cow position: chr5:13206055-13205736 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 26-327
Cow position: chr5:59082865-59082552 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 18, 85

Conread position: 26-328
Cow position: chr5:24946734-24947039 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 216
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 186, 15

Conread position: 26-329
Cow position: chr5:26466952-26467263 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 18, 47

Conread position: 26-329
Cow position: chr5:37942461-37942149 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 18, 91

Conread position: 26-329
Cow position: chr5:56442605-56442923 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 226
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 18, 0

Conread position: 26-329
Cow position: chr5:59782417-59782118 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 223
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 106, 13

Conread position: 26-329
Cow position: chr5:72046324-72046003 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 232
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 18, 38

Conread position: 26-331
Cow position: chr5:59788-59470 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 81

Conread position: 26-331
Cow position: chr5:1105528-1105217 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 101

Conread position: 26-331
Cow position: chr5:45705360-45705674 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 225
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 17, 80

Conread position: 26-331
Cow position: chr5:47704810-47704492 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 140

Conread position: 26-331
Cow position: chr5:58004574-58004887 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 70

Conread position: 26-336
Cow position: chr5:34464259-34463937 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 36

Conread position: 26-337
Cow position: chr5:7808534-7808210 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 236
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 13, 138

Conread position: 26-337
Cow position: chr5:33472179-33471864 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 233
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 18, 140

Conread position: 26-337
Cow position: chr5:47871724-47871396 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 237
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 18, 90

Conread position: 26-339
Cow position: chr5:34584836-34584518 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 225
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 18, 79

Conread position: 26-340
Cow position: chr5:72398968-72399289 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 209
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 141

Conread position: 26-350
Cow position: chr5:4542337-4542678 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 225
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 149

Conread position: 26-353
Cow position: chr5:57613720-57613395 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 240
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 18, 141

Conread position: 26-355
Cow position: chr5:9235061-9234727 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 62

Conread position: 26-355
Cow position: chr5:23641672-23641330 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 310

Conread position: 26-355
Cow position: chr5:48574450-48574115 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 88

Conread position: 26-355
Cow position: chr5:49127056-49127397 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 88

Conread position: 26-355
Cow position: chr5:57125353-57125692 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 317

Conread position: 26-357
Cow position: chr5:17027415-17027759 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 174

Conread position: 26-357
Cow position: chr5:27614824-27615165 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 150

Conread position: 26-357
Cow position: chr5:27656203-27656547 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 320

Conread position: 26-357
Cow position: chr5:41333936-41334274 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 241
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 103, 72

Conread position: 26-357
Cow position: chr5:44752974-44752652 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 193

Conread position: 26-357
Cow position: chr5:48405661-48405335 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 139

Conread position: 26-357
Cow position: chr5:70249482-70249816 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 137

Conread position: 26-357
Cow position: chr5:72901876-72902216 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 169

Conread position: 26-387
Cow position: chr5:69771500-69771871 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 313

Conread position: 26-405
Cow position: chr5:72041530-72041922 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 319

Conread position: 27-310
Cow position: chr5:51309293-51309589 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 206
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 17, 250

Conread position: 27-329
Cow position: chr5:14630586-14630267 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 227
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 17, 0

Conread position: 27-358
Cow position: chr5:37047254-37047598 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 242

Conread position: 28-303
Cow position: chr5:73485535-73485249 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 254

Conread position: 30-333
Cow position: chr5:31785635-31785951 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 227
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 13, 105

Conread position: 30-357
Cow position: chr5:41228694-41228358 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 68

Conread position: 31-355
Cow position: chr5:49132563-49132896 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 231
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 14, 99

Conread position: 32-306
Cow position: chr5:66278779-66279065 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 192
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 12, 26

Conread position: 32-355
Cow position: chr5:48225229-48224912 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 240
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 12, 53

Conread position: 36-310
Cow position: chr5:7277247-7277533 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 199
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 86, 231

Conread position: 37-329
Cow position: chr5:53835031-53835336 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 138

Conread position: 38-310
Cow position: chr5:2331113-2330834 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 204
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 91, 33

Conread position: 38-329
Cow position: chr5:65207210-65206909 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 209
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 91, 81

Conread position: 43-331
Cow position: chr5:24837695-24837397 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 220
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 9, 19

Conread position: 44-331
Cow position: chr5:27015045-27015336 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 207
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 85, 23

Conread position: 45-355
Cow position: chr5:4328628-4328940 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 221
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 42, 16

Conread position: 45-357
Cow position: chr5:10790370-10790041 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 149

Conread position: 47-329
Cow position: chr5:3281517-3281226 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 82, 67

Conread position: 54-331
Cow position: chr5:31470220-31469931 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 62-357
Cow position: chr5:24348488-24348782 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 215
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 67, 23

Conread position: 67-357
Cow position: chr5:36406539-36406836 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 273

Conread position: 71-351
Cow position: chr5:51951726-51952011 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 58, 25

Conread position: 81-332
Cow position: chr5:360558-360298 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 123, 50

Conread position: 86-357
Cow position: chr5:58748155-58748430 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 201
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 43, 194

Conread position: 89-359
Cow position: chr5:39874133-39874406 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 204
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 40, 65

Conread position: 91-354
Cow position: chr5:50900246-50900509 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 201
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 39, 70

Conread position: 91-357
Cow position: chr5:26045686-26045960 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 205
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 38, 197

Conread position: 116-328
Cow position: chr5:26156550-26156327 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 15, 0

Conread position: 118-329
Cow position: chr5:59779730-59779517 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 14, 43

Conread position: 118-332
Cow position: chr5:46708598-46708824 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 12, 153

Conread position: 128-336
Cow position: chr5:15363324-15363540 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 82, 203

Conread position: 130-329
Cow position: chr5:39298959-39299170 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 130-355
Cow position: chr5:29559769-29559996 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 172
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 99, 16

Conread position: 131-354
Cow position: chr5:5193848-5194077 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 169
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 79, 42

Conread position: 138-355
Cow position: chr5:3439874-3439649 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 172
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 74, 187

Conread position: 139-342
Cow position: chr5:33467604-33467395 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 23, 36

Conread position: 153-335
Cow position: chr5:16894313-16894122 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 53, 18

Conread position: 165-329
Cow position: chr5:34506459-34506285 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 165-357
Cow position: chr5:15455304-15455505 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 178

Conread position: 165-357
Cow position: chr5:67654783-67654973 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 45, 11

Conread position: 169-355
Cow position: chr5:40892031-40891839 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 145
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 41, 163

Conread position: 169-355
Cow position: chr5:73525797-73525991 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 152
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 37, 112

Conread position: 170-428
Cow position: chr5:5849182-5848925 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 192
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 40, 162

Conread position: 171-357
Cow position: chr5:49566551-49566743 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 154
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 41, 108

Conread position: 185-357
Cow position: chr5:34915755-34915573 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 27, 80

Conread position: 193-357
Cow position: chr5:49478819-49478993 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 19, 71

Conread position: 199-351
Cow position: chr5:7721759-7721918 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 31, 11

Conread position: 211-357
Cow position: chr5:63608044-63607901 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 73, 13

Conread position: 226-355
Cow position: chr5:26376100-26376227 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 58, 105

Conread position: 226-355
Cow position: chr5:33270009-33270141 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 103

Conread position: 226-355
Cow position: chr5:48407049-48406921 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 57, 106

Conread position: 226-357
Cow position: chr5:20808193-20808323 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 57, 90

Conread position: 226-357
Cow position: chr5:55176423-55176553 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 59, 106

Conread position: 226-357
Cow position: chr5:57365536-57365406 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 97

Conread position: 226-357
Cow position: chr5:65593410-65593538 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 57, 91

Conread position: 226-358
Cow position: chr5:4032474-4032345 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 58, 88

Conread position: 229-357
Cow position: chr5:35144883-35145011 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 55, 104

Conread position: 232-357
Cow position: chr5:29755843-29755969 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 51, 0

Show alignments to all cow chromosomes.