Cow genome map
| Conread name: | Ovi2-UMC-peov1-002-b11 |
| Conread position: | 22-355 |
| Cow position: | chr9:1280351-1280690 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 22, 82 |
| Conread position: | 26-309 |
| Cow position: | chr9:6252981-6253277 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 18, 258 |
| Conread position: | 26-309 |
| Cow position: | chr9:11057510-11057215 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 18, 256 |
| Conread position: | 26-309 |
| Cow position: | chr9:24917871-24917576 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 18, 124 |
| Conread position: | 26-310 |
| Cow position: | chr9:30187122-30187419 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 18, 257 |
| Conread position: | 26-327 |
| Cow position: | chr9:63556098-63555778 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 26-328 |
| Cow position: | chr9:874070-874386 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 14, 242 |
| Conread position: | 26-328 |
| Cow position: | chr9:17871076-17871389 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 26-328 |
| Cow position: | chr9:19509209-19508897 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 9, 244 |
| Conread position: | 26-328 |
| Cow position: | chr9:34015825-34016144 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 18, 91 |
| Conread position: | 26-329 |
| Cow position: | chr9:13181326-13181644 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 17, 158 |
| Conread position: | 26-329 |
| Cow position: | chr9:20900387-20900701 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 104 |
| Conread position: | 26-329 |
| Cow position: | chr9:37017610-37017298 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 228 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 26-331 |
| Cow position: | chr9:17633904-17634218 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 26-332 |
| Cow position: | chr9:1519998-1520317 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 308 |
| Conread position: | 26-332 |
| Cow position: | chr9:34696564-34696884 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 103, 311 |
| Conread position: | 26-348 |
| Cow position: | chr9:22583276-22583596 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 18, 91 |
| Conread position: | 26-350 |
| Cow position: | chr9:42172134-42172467 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 310 |
| Conread position: | 26-351 |
| Cow position: | chr9:23859274-23858950 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 13, 141 |
| Conread position: | 26-354 |
| Cow position: | chr9:47836196-47836531 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 26-355 |
| Cow position: | chr9:4862156-4861823 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 152 |
| Conread position: | 26-355 |
| Cow position: | chr9:25238997-25238660 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 124 |
| Conread position: | 26-355 |
| Cow position: | chr9:38547142-38546797 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 26-357 |
| Cow position: | chr9:9957776-9957432 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 320 |
| Conread position: | 26-357 |
| Cow position: | chr9:10665320-10665646 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 246 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 12, 106 |
| Conread position: | 26-357 |
| Cow position: | chr9:61130309-61130632 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 251 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 17, 101 |
| Conread position: | 26-357 |
| Cow position: | chr9:64105724-64105380 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 243 |
| Conread position: | 26-363 |
| Cow position: | chr9:63654368-63654733 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 17, 138 |
| Conread position: | 26-370 |
| Cow position: | chr9:19380348-19380001 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 101 |
| Conread position: | 27-355 |
| Cow position: | chr9:1516795-1517143 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 251 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 17, 251 |
| Conread position: | 28-357 |
| Cow position: | chr9:9415616-9415957 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 248 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 16, 90 |
| Conread position: | 28-357 |
| Cow position: | chr9:34568061-34568399 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 28-357 |
| Cow position: | chr9:48774059-48773718 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 317 |
| Conread position: | 30-355 |
| Cow position: | chr9:31539546-31539876 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 30-357 |
| Cow position: | chr9:44218262-44218607 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 38-355 |
| Cow position: | chr9:32688055-32688374 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 172, 86 |
| Conread position: | 38-366 |
| Cow position: | chr9:30891293-30891628 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 73 |
| Conread position: | 42-329 |
| Cow position: | chr9:29361729-29362025 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 87, 19 |
| Conread position: | 43-329 |
| Cow position: | chr9:26115142-26115438 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 113 |
| Conread position: | 43-331 |
| Cow position: | chr9:20393421-20393717 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 77, 29 |
| Conread position: | 49-310 |
| Cow position: | chr9:20848672-20848401 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 81, 231 |
| Conread position: | 58-355 |
| Cow position: | chr9:4859243-4858940 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 69 |
| Conread position: | 61-361 |
| Cow position: | chr9:56253623-56253316 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 279 |
| Conread position: | 63-351 |
| Cow position: | chr9:33823791-33823500 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 147, 39 |
| Conread position: | 63-357 |
| Cow position: | chr9:41958342-41958060 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 66, 154 |
| Conread position: | 66-357 |
| Cow position: | chr9:9822567-9822855 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 153 |
| Conread position: | 67-359 |
| Cow position: | chr9:34310728-34310426 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 69-357 |
| Cow position: | chr9:8601049-8600749 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 60, 292 |
| Conread position: | 85-313 |
| Cow position: | chr9:59529651-59529881 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 127, 39 |
| Conread position: | 85-330 |
| Cow position: | chr9:4305023-4304761 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 110 |
| Conread position: | 90-357 |
| Cow position: | chr9:19382991-19382717 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 39, 80 |
| Conread position: | 91-357 |
| Cow position: | chr9:4929282-4929013 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 91-357 |
| Cow position: | chr9:51929359-51929088 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 38, 249 |
| Conread position: | 93-359 |
| Cow position: | chr9:50293867-50294139 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 37, 236 |
| Conread position: | 98-359 |
| Cow position: | chr9:23043612-23043339 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 104-329 |
| Cow position: | chr9:6089753-6089516 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 124-357 |
| Cow position: | chr9:53603042-53602803 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 128-328 |
| Cow position: | chr9:46316164-46316374 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 80, 160 |
| Conread position: | 128-329 |
| Cow position: | chr9:19568278-19568067 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 154 |
| Conread position: | 128-356 |
| Cow position: | chr9:21462217-21462451 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 84, 32 |
| Conread position: | 129-357 |
| Cow position: | chr9:15006144-15006389 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 77, 206 |
| Conread position: | 138-328 |
| Cow position: | chr9:24726064-24726265 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 139-357 |
| Cow position: | chr9:3844449-3844672 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 73, 195 |
| Conread position: | 139-380 |
| Cow position: | chr9:41932691-41932440 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 29, 190 |
| Conread position: | 141-355 |
| Cow position: | chr9:26124213-26124434 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 69, 192 |
| Conread position: | 146-331 |
| Cow position: | chr9:20816447-20816253 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 162-357 |
| Cow position: | chr9:2910682-2910484 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 8 |
| Conread position: | 164-320 |
| Cow position: | chr9:22617206-22617041 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 165-349 |
| Cow position: | chr9:12356444-12356241 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 165-355 |
| Cow position: | chr9:7389772-7389967 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 165-357 |
| Cow position: | chr9:44553364-44553164 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 167-355 |
| Cow position: | chr9:12566946-12566751 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 120 |
| Conread position: | 167-355 |
| Cow position: | chr9:34070296-34070492 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 48, 174 |
| Conread position: | 169-351 |
| Cow position: | chr9:10149246-10149439 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 167 |
| Conread position: | 170-357 |
| Cow position: | chr9:38032551-38032743 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 175-329 |
| Cow position: | chr9:55983149-55983317 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 185-355 |
| Cow position: | chr9:27086033-27085859 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 90 |
| Conread position: | 186-357 |
| Cow position: | chr9:32265834-32266001 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 45 |
| Conread position: | 193-351 |
| Cow position: | chr9:12184382-12184216 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 138 |
| Conread position: | 203-354 |
| Cow position: | chr9:58854380-58854233 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 25, 11 |
| Conread position: | 226-357 |
| Cow position: | chr9:28948377-28948247 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 98 |
| Conread position: | 229-357 |
| Cow position: | chr9:20960759-20960889 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
Show alignments to all cow chromosomes.