Cow genome map

Conread name: Ovi2-UMC-peov1-002-b11

Conread position: 26-304
Cow position: chrX:5320393-5320103 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 208
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 18, 84

Conread position: 26-309
Cow position: chrX:13928426-13928132 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 215
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 18, 138

Conread position: 26-309
Cow position: chrX:21196347-21196643 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 200
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 18, 0

Conread position: 26-309
Cow position: chrX:35240191-35240486 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 138

Conread position: 26-310
Cow position: chrX:3096428-3096132 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 69

Conread position: 26-310
Cow position: chrX:5406385-5406681 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 211
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 18, 196

Conread position: 26-310
Cow position: chrX:11146008-11145715 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 218
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 18, 35

Conread position: 26-310
Cow position: chrX:24735268-24735566 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 213
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 18, 243

Conread position: 26-314
Cow position: chrX:18455457-18455155 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 173

Conread position: 26-314
Cow position: chrX:21191191-21191499 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 217
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 11, 254

Conread position: 26-314
Cow position: chrX:25436606-25436307 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 219
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 14, 227

Conread position: 26-315
Cow position: chrX:10931998-10932300 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 257

Conread position: 26-327
Cow position: chrX:4326164-4325851 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 227
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 17, 39

Conread position: 26-328
Cow position: chrX:4751047-4750731 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 259

Conread position: 26-328
Cow position: chrX:16711281-16711596 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 222
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 18, 78

Conread position: 26-328
Cow position: chrX:27095444-27095761 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 26-328
Cow position: chrX:29942475-29942791 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 258

Conread position: 26-329
Cow position: chrX:6543590-6543898 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 104

Conread position: 26-329
Cow position: chrX:12290063-12290380 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 225
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 15, 140

Conread position: 26-329
Cow position: chrX:38072442-38072125 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 26-329
Cow position: chrX:44874204-44873892 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 135

Conread position: 26-331
Cow position: chrX:17891872-17892187 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 229
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 45, 19

Conread position: 26-331
Cow position: chrX:22812387-22812706 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 228
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 18, 0

Conread position: 26-331
Cow position: chrX:25816928-25816611 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 107

Conread position: 26-331
Cow position: chrX:35680670-35680988 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 228
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 20, 39

Conread position: 26-336
Cow position: chrX:35388583-35388259 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 92

Conread position: 26-343
Cow position: chrX:35609313-35609642 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 138

Conread position: 26-353
Cow position: chrX:2185565-2185892 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 91

Conread position: 26-355
Cow position: chrX:3145328-3145668 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 227

Conread position: 26-355
Cow position: chrX:17265712-17265386 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 59

Conread position: 26-356
Cow position: chrX:25282168-25281824 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 322

Conread position: 26-357
Cow position: chrX:2649036-2648694 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 310

Conread position: 26-357
Cow position: chrX:4408886-4409238 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 88

Conread position: 26-357
Cow position: chrX:6766418-6766076 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 245
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 18, 62

Conread position: 26-357
Cow position: chrX:7805702-7806040 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 309

Conread position: 26-357
Cow position: chrX:9837442-9837782 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 267

Conread position: 26-357
Cow position: chrX:9854603-9854941 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 19

Conread position: 26-357
Cow position: chrX:31261309-31260969 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 244
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 22, 18

Conread position: 26-357
Cow position: chrX:33803678-33803353 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 250
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 14, 47

Conread position: 26-357
Cow position: chrX:38999228-38999565 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 303

Conread position: 26-366
Cow position: chrX:9953442-9953790 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 89

Conread position: 27-357
Cow position: chrX:19228742-19228412 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 48

Conread position: 30-329
Cow position: chrX:40187307-40187621 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 228
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 10, 238

Conread position: 30-355
Cow position: chrX:8516935-8517268 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 35

Conread position: 32-329
Cow position: chrX:30980561-30980249 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 222
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 14, 0

Conread position: 32-366
Cow position: chrX:29875671-29875324 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 245
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 12, 202

Conread position: 36-355
Cow position: chrX:27450722-27450370 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 245
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 81, 135

Conread position: 36-357
Cow position: chrX:12249133-12249463 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 243
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 15, 307

Conread position: 37-313
Cow position: chrX:7288170-7288459 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 211
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 91, 0

Conread position: 38-328
Cow position: chrX:10866527-10866225 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 0

Conread position: 38-330
Cow position: chrX:33172623-33172326 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 198
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 20, 135

Conread position: 38-332
Cow position: chrX:35847565-35847859 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 213
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 91, 60

Conread position: 38-356
Cow position: chrX:24006489-24006161 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 222
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 88, 96

Conread position: 38-357
Cow position: chrX:35288001-35288322 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 22

Conread position: 43-329
Cow position: chrX:7512837-7513133 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 71

Conread position: 44-357
Cow position: chrX:40452874-40452551 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 308

Conread position: 53-328
Cow position: chrX:21662459-21662738 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 210
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 157, 75

Conread position: 53-335
Cow position: chrX:17743425-17743718 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 45

Conread position: 54-310
Cow position: chrX:44396305-44396568 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 196
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 44, 158

Conread position: 54-355
Cow position: chrX:25425496-25425799 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 211
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 79, 104

Conread position: 58-355
Cow position: chrX:34993531-34993836 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 274

Conread position: 61-309
Cow position: chrX:21785132-21785390 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 194
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 59, 53

Conread position: 63-336
Cow position: chrX:32871421-32871138 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 211
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 57, 51

Conread position: 66-329
Cow position: chrX:27485771-27486046 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 201
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 63, 0

Conread position: 67-351
Cow position: chrX:22125498-22125204 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 267

Conread position: 68-302
Cow position: chrX:15306362-15306117 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 183
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 61, 207

Conread position: 70-310
Cow position: chrX:7677342-7677591 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 47, 112

Conread position: 72-355
Cow position: chrX:9161246-9160958 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 263

Conread position: 75-357
Cow position: chrX:10960036-10960326 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 266

Conread position: 83-343
Cow position: chrX:7571288-7571557 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 195
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 46, 251

Conread position: 86-322
Cow position: chrX:11632037-11632282 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 174
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 46, 8

Conread position: 87-332
Cow position: chrX:32329414-32329665 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 147
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 123, 243

Conread position: 88-310
Cow position: chrX:525070-525298 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 41, 16

Conread position: 90-329
Cow position: chrX:28866589-28866345 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 39, 24

Conread position: 91-357
Cow position: chrX:9537935-9538206 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 206
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 38, 75

Conread position: 98-357
Cow position: chrX:6642092-6642367 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 113, 235

Conread position: 111-329
Cow position: chrX:27443145-27442910 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 70

Conread position: 125-357
Cow position: chrX:16514819-16514579 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 187
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 85, 216

Conread position: 128-327
Cow position: chrX:4632589-4632386 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 84, 125

Conread position: 128-355
Cow position: chrX:23414957-23414722 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 182
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 87, 205

Conread position: 128-357
Cow position: chrX:7424857-7425092 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 177
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 34, 130

Conread position: 129-329
Cow position: chrX:11655515-11655719 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 81, 51

Conread position: 130-310
Cow position: chrX:16808402-16808213 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 80, 132

Conread position: 139-362
Cow position: chrX:9911332-9911104 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 178
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 69, 201

Conread position: 141-355
Cow position: chrX:18988905-18989126 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 65, 132

Conread position: 141-355
Cow position: chrX:21815610-21815829 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 167
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 69, 102

Conread position: 141-357
Cow position: chrX:6695904-6695682 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 69, 28

Conread position: 146-329
Cow position: chrX:8518521-8518714 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 72, 0

Conread position: 150-355
Cow position: chrX:19878488-19878699 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 50, 12

Conread position: 151-331
Cow position: chrX:20675562-20675743 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 39, 9

Conread position: 155-334
Cow position: chrX:45992705-45992895 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 45

Conread position: 156-355
Cow position: chrX:20504221-20504427 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 156
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 50, 113

Conread position: 166-355
Cow position: chrX:39125779-39125980 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 12, 96

Conread position: 169-315
Cow position: chrX:3471194-3471351 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 169-357
Cow position: chrX:38642492-38642687 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 156
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 37, 163

Conread position: 171-357
Cow position: chrX:15007677-15007489 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 147
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 39, 170

Conread position: 172-356
Cow position: chrX:17965041-17964848 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 39, 140

Conread position: 174-329
Cow position: chrX:9651569-9651403 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 184-331
Cow position: chrX:42470449-42470293 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 194-332
Cow position: chrX:34238218-34238365 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 226-357
Cow position: chrX:38840387-38840518 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 57, 99

Conread position: 243-357
Cow position: chrX:160484-160370 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 40, 28

Conread position: 243-357
Cow position: chrX:36692794-36692910 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Show alignments to all cow chromosomes.