Cow genome map

Conread name: Ovi2-UMC-peov1-011-h11

Conread position: 1-275
Cow position: chr11:80471979-80472262 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 197
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 24, 51

Conread position: 1-289
Cow position: chr11:13454290-13454584 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 210
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 14, 20

Conread position: 1-416
Cow position: chr11:11052219-11052648 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 294
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 100, 26

Conread position: 1-424
Cow position: chr11:31892918-31892473 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 298
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 110, 34

Conread position: 1-430
Cow position: chr11:54649906-54650351 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 305
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 145, 42

Conread position: 1-431
Cow position: chr11:45550101-45549657 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 322
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 51, 93

Conread position: 3-289
Cow position: chr11:15942340-15942631 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 208
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 107, 32

Conread position: 3-309
Cow position: chr11:38796779-38796462 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 218
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 115, 37

Conread position: 5-421
Cow position: chr11:26655584-26655141 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 317
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 101, 30

Conread position: 7-289
Cow position: chr11:50267358-50267072 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 197
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 123, 42

Conread position: 19-402
Cow position: chr11:61397663-61398072 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 277
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 11, 18

Conread position: 22-389
Cow position: chr11:74928761-74928354 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 274
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 93, 12

Conread position: 32-402
Cow position: chr11:26068168-26068551 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 257
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 20, 132

Conread position: 33-262
Cow position: chr11:5273626-5273867 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 84, 157

Conread position: 33-278
Cow position: chr11:11990945-11990688 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 186
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 73, 156

Conread position: 33-279
Cow position: chr11:39151545-39151287 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 185
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 66, 156

Conread position: 33-280
Cow position: chr11:25336087-25335828 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 176
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 82, 156

Conread position: 33-280
Cow position: chr11:49935800-49936052 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 171
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 84, 155

Conread position: 33-282
Cow position: chr11:16229699-16229961 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 177
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 71, 157

Conread position: 33-288
Cow position: chr11:4267207-4267473 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 22

Conread position: 33-288
Cow position: chr11:5482498-5482765 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 196
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 22

Conread position: 33-288
Cow position: chr11:7719567-7719835 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 84, 153

Conread position: 33-288
Cow position: chr11:29614340-29614072 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 84, 157

Conread position: 33-288
Cow position: chr11:32077835-32078099 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 84, 42

Conread position: 33-288
Cow position: chr11:43511027-43511291 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 187
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 84, 153

Conread position: 33-288
Cow position: chr11:48168125-48168387 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 186
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 85, 151

Conread position: 33-288
Cow position: chr11:67920390-67920652 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 187
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 73, 151

Conread position: 33-312
Cow position: chr11:17980344-17980637 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 200
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 84, 127

Conread position: 33-315
Cow position: chr11:21471575-21471286 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 171
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 73, 151

Conread position: 33-382
Cow position: chr11:417525-417892 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 258
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 84, 157

Conread position: 33-382
Cow position: chr11:18920638-18921022 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 266
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 84, 153

Conread position: 33-382
Cow position: chr11:32455002-32454622 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 257
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 84, 157

Conread position: 33-384
Cow position: chr11:15835860-15835480 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 262
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 84, 153

Conread position: 33-385
Cow position: chr11:44154130-44154520 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 268
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 84, 157

Conread position: 33-389
Cow position: chr11:2567735-2568119 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 270
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 76, 152

Conread position: 33-402
Cow position: chr11:1492900-1493304 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 280
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 84, 157

Conread position: 33-402
Cow position: chr11:27724953-27725360 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 277
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 73, 157

Conread position: 33-406
Cow position: chr11:12353944-12354355 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 282
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 84, 157

Conread position: 33-406
Cow position: chr11:19099537-19099946 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 290
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 13, 22

Conread position: 33-406
Cow position: chr11:85390902-85391308 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 279
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 73, 151

Conread position: 33-410
Cow position: chr11:8246113-8245698 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 281
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 84, 157

Conread position: 33-410
Cow position: chr11:10851062-10850654 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 282
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 84, 150

Conread position: 33-410
Cow position: chr11:24396283-24395867 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 283
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 82, 157

Conread position: 33-410
Cow position: chr11:35738394-35738809 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 285
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 84, 157

Conread position: 33-410
Cow position: chr11:44255021-44254608 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 282
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 84, 31

Conread position: 33-410
Cow position: chr11:56463310-56462895 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 285
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 84, 157

Conread position: 33-416
Cow position: chr11:28393825-28393419 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 269
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 84, 157

Conread position: 33-429
Cow position: chr11:4024401-4024825 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 292
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 73, 157

Conread position: 33-429
Cow position: chr11:12317122-12317554 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 299
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 84, 157

Conread position: 33-429
Cow position: chr11:53429074-53429505 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 299
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 73, 157

Conread position: 34-402
Cow position: chr11:25808800-25809202 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 269
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 96, 139

Conread position: 37-288
Cow position: chr11:18146602-18146860 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 185
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 75, 143

Conread position: 37-288
Cow position: chr11:38640895-38640631 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 184
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 80, 149

Conread position: 37-308
Cow position: chr11:1667568-1667286 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 194
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 68, 150

Conread position: 37-389
Cow position: chr11:66732074-66731698 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 251
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 69, 151

Conread position: 37-415
Cow position: chr11:41101861-41101453 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 276
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 90, 150

Conread position: 43-288
Cow position: chr11:81067687-81067429 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 176
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 74, 147

Conread position: 45-288
Cow position: chr11:44580298-44580550 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 72, 10

Conread position: 45-382
Cow position: chr11:10958764-10958392 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 257
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 58, 12

Conread position: 45-382
Cow position: chr11:72368989-72368614 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 257
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 72, 145

Conread position: 46-288
Cow position: chr11:9388272-9388016 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 174
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 71, 0

Conread position: 46-288
Cow position: chr11:9708083-9707828 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 183
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 71, 144

Conread position: 46-288
Cow position: chr11:14260024-14260278 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 182
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 84, 14

Conread position: 46-288
Cow position: chr11:29663115-29663369 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 183
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 71, 100

Conread position: 46-288
Cow position: chr11:36930595-36930842 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 178
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 71, 133

Conread position: 46-288
Cow position: chr11:38832542-38832798 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 191
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 60, 144

Conread position: 46-288
Cow position: chr11:72313383-72313128 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 181
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 71, 151

Conread position: 46-289
Cow position: chr11:55216270-55216017 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 104

Conread position: 46-301
Cow position: chr11:81338461-81338722 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 185
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 70, 123

Conread position: 46-410
Cow position: chr11:26550411-26550014 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 274
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 60, 25

Conread position: 46-410
Cow position: chr11:71332436-71332035 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 280
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 71, 151

Conread position: 46-411
Cow position: chr11:28693035-28693434 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 263
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 69, 144

Conread position: 46-415
Cow position: chr11:60605026-60604624 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 263
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 71, 0

Conread position: 46-416
Cow position: chr11:7680898-7680490 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 275
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 71, 150

Conread position: 47-410
Cow position: chr11:58139640-58139243 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 276
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 7, 144

Conread position: 48-278
Cow position: chr11:60757043-60757284 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 69, 6

Conread position: 48-288
Cow position: chr11:51034211-51033967 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 8, 79

Conread position: 48-324
Cow position: chr11:21878856-21879155 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 216
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 63, 150

Conread position: 48-425
Cow position: chr11:39484214-39483803 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 276
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 69, 17

Conread position: 54-389
Cow position: chr11:65281946-65281573 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 261
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 52, 136

Conread position: 59-328
Cow position: chr11:40487078-40486785 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 202
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 44, 128

Conread position: 67-430
Cow position: chr11:27074965-27074585 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 254
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 45, 95

Conread position: 74-426
Cow position: chr11:4059204-4059567 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 257
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 35, 29

Conread position: 136-423
Cow position: chr11:82145825-82146123 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 205
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 12, 46

Conread position: 180-431
Cow position: chr11:72869510-72869256 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 179
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 90, 56

Show alignments to all cow chromosomes.