Cow genome map
| Conread name: | Ovi2-UMC-peov1-011-h11 |
| Conread position: | 1-224 |
| Cow position: | chr13:24110014-24110240 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 105, 52 |
| Conread position: | 1-283 |
| Cow position: | chr13:42094693-42094415 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 108, 49 |
| Conread position: | 1-289 |
| Cow position: | chr13:41568278-41568572 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 110, 41 |
| Conread position: | 1-325 |
| Cow position: | chr13:44466124-44466470 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 15, 20 |
| Conread position: | 1-424 |
| Cow position: | chr13:36106167-36105719 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 114, 47 |
| Conread position: | 1-429 |
| Cow position: | chr13:11169103-11169548 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 116, 49 |
| Conread position: | 1-430 |
| Cow position: | chr13:25882281-25881830 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 117, 49 |
| Conread position: | 2-431 |
| Cow position: | chr13:14182900-14183365 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 48 |
| Conread position: | 3-289 |
| Cow position: | chr13:488571-488282 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 88, 32 |
| Conread position: | 26-293 |
| Cow position: | chr13:42186633-42186907 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 89, 24 |
| Conread position: | 29-280 |
| Cow position: | chr13:22714926-22714663 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 90, 7 |
| Conread position: | 29-289 |
| Cow position: | chr13:3480867-3481131 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 33-280 |
| Cow position: | chr13:561363-561621 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 78, 157 |
| Conread position: | 33-280 |
| Cow position: | chr13:32774328-32774582 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 81, 44 |
| Conread position: | 33-282 |
| Cow position: | chr13:41337644-41337908 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 159 |
| Conread position: | 33-288 |
| Cow position: | chr13:14302963-14303228 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 69, 151 |
| Conread position: | 33-288 |
| Cow position: | chr13:16248918-16249189 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 237 |
| Conread position: | 33-288 |
| Cow position: | chr13:32734164-32734431 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-288 |
| Cow position: | chr13:38612247-38611979 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 33-289 |
| Cow position: | chr13:2805259-2805527 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 73, 133 |
| Conread position: | 33-289 |
| Cow position: | chr13:7609168-7608901 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 84, 158 |
| Conread position: | 33-289 |
| Cow position: | chr13:44323938-44324209 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-292 |
| Cow position: | chr13:34376506-34376778 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 50, 158 |
| Conread position: | 33-379 |
| Cow position: | chr13:28699843-28699461 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 33-382 |
| Cow position: | chr13:43974928-43975307 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-389 |
| Cow position: | chr13:36347104-36347493 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 73, 31 |
| Conread position: | 33-402 |
| Cow position: | chr13:47574541-47574925 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 33-410 |
| Cow position: | chr13:1591133-1591546 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr13:3651421-3651835 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 283 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 73, 156 |
| Conread position: | 33-410 |
| Cow position: | chr13:4944413-4943998 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 291 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 33-410 |
| Cow position: | chr13:13902879-13902468 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 284 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 84, 156 |
| Conread position: | 33-410 |
| Cow position: | chr13:14400053-14400470 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 19, 154 |
| Conread position: | 33-410 |
| Cow position: | chr13:15921434-15921849 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr13:30306209-30305797 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 33-410 |
| Cow position: | chr13:30469095-30469507 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 78, 154 |
| Conread position: | 33-410 |
| Cow position: | chr13:31608419-31608832 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 84, 34 |
| Conread position: | 33-410 |
| Cow position: | chr13:34039318-34039732 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr13:35760565-35760166 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 84, 150 |
| Conread position: | 33-415 |
| Cow position: | chr13:19638176-19637756 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-429 |
| Cow position: | chr13:4486876-4486444 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 300 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-429 |
| Cow position: | chr13:61954266-61953842 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 155 |
| Conread position: | 37-288 |
| Cow position: | chr13:11795678-11795945 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 68, 155 |
| Conread position: | 37-288 |
| Cow position: | chr13:58718575-58718314 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 71, 152 |
| Conread position: | 37-337 |
| Cow position: | chr13:34928175-34927858 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 80, 203 |
| Conread position: | 37-410 |
| Cow position: | chr13:18330106-18330517 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 80, 153 |
| Conread position: | 37-411 |
| Cow position: | chr13:22275799-22275409 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 266 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 229, 80 |
| Conread position: | 37-430 |
| Cow position: | chr13:34321961-34322373 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 82, 147 |
| Conread position: | 39-410 |
| Cow position: | chr13:9301188-9300779 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 8, 152 |
| Conread position: | 41-289 |
| Cow position: | chr13:12565147-12565397 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 76, 102 |
| Conread position: | 43-415 |
| Cow position: | chr13:59403164-59403558 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 31, 148 |
| Conread position: | 45-288 |
| Cow position: | chr13:34345314-34345059 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 46-289 |
| Cow position: | chr13:26986902-26987157 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 71, 143 |
| Conread position: | 46-301 |
| Cow position: | chr13:41362616-41362353 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 68, 53 |
| Conread position: | 46-402 |
| Cow position: | chr13:3314637-3314244 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 143 |
| Conread position: | 46-410 |
| Cow position: | chr13:30794705-30795104 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 74, 150 |
| Conread position: | 46-421 |
| Cow position: | chr13:32794331-32794739 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 279 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 71, 140 |
| Conread position: | 46-421 |
| Cow position: | chr13:49354442-49354042 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 269 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 48-289 |
| Cow position: | chr13:32008845-32008597 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 139 |
| Conread position: | 58-429 |
| Cow position: | chr13:44735014-44734639 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 281 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 48, 121 |
| Conread position: | 68-410 |
| Cow position: | chr13:35686364-35685987 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 122 |
| Conread position: | 70-288 |
| Cow position: | chr13:34508836-34509067 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 120 |
Show alignments to all cow chromosomes.