Cow genome map
| Conread name: | Ovi2-UMC-peov1-011-h11 |
| Conread position: | 1-424 |
| Cow position: | chr16:12175490-12175955 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 329 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 110, 27 |
| Conread position: | 3-288 |
| Cow position: | chr16:34410785-34411071 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 113, 39 |
| Conread position: | 3-431 |
| Cow position: | chr16:8662286-8662739 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 44, 113 |
| Conread position: | 9-416 |
| Cow position: | chr16:14067935-14068340 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 265 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 17-289 |
| Cow position: | chr16:45655030-45655307 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 26-430 |
| Cow position: | chr16:19722511-19722080 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 91, 160 |
| Conread position: | 32-288 |
| Cow position: | chr16:19081602-19081333 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 85, 158 |
| Conread position: | 32-415 |
| Cow position: | chr16:28206561-28206979 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 85, 158 |
| Conread position: | 33-268 |
| Cow position: | chr16:48411184-48410935 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-274 |
| Cow position: | chr16:20204553-20204298 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 75, 157 |
| Conread position: | 33-286 |
| Cow position: | chr16:3769462-3769727 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 73, 156 |
| Conread position: | 33-288 |
| Cow position: | chr16:2480600-2480863 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 70, 152 |
| Conread position: | 33-288 |
| Cow position: | chr16:8813554-8813820 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 84, 156 |
| Conread position: | 33-288 |
| Cow position: | chr16:23533450-23533716 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-288 |
| Cow position: | chr16:23875991-23876248 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 84, 147 |
| Conread position: | 33-288 |
| Cow position: | chr16:24240851-24241119 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-288 |
| Cow position: | chr16:28468574-28468842 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-288 |
| Cow position: | chr16:34532843-34532575 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-288 |
| Cow position: | chr16:41033848-41033582 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 156 |
| Conread position: | 33-290 |
| Cow position: | chr16:37486708-37486977 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 84, 156 |
| Conread position: | 33-297 |
| Cow position: | chr16:3011387-3011113 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-379 |
| Cow position: | chr16:1734287-1733907 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 73, 156 |
| Conread position: | 33-382 |
| Cow position: | chr16:18975417-18975032 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 73, 117 |
| Conread position: | 33-382 |
| Cow position: | chr16:25260672-25260287 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 84, 21 |
| Conread position: | 33-382 |
| Cow position: | chr16:26990391-26990777 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 84, 155 |
| Conread position: | 33-384 |
| Cow position: | chr16:46554971-46554582 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-389 |
| Cow position: | chr16:26666253-26665859 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-402 |
| Cow position: | chr16:20378002-20377604 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 84, 148 |
| Conread position: | 33-409 |
| Cow position: | chr16:7467161-7466749 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 58 |
| Conread position: | 33-409 |
| Cow position: | chr16:43562846-43563257 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 69, 157 |
| Conread position: | 33-410 |
| Cow position: | chr16:41083-40671 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 84, 164 |
| Conread position: | 33-410 |
| Cow position: | chr16:417444-417028 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr16:11633295-11633709 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr16:23985862-23985445 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 73, 158 |
| Conread position: | 33-410 |
| Cow position: | chr16:27730832-27731247 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr16:54179815-54180219 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 84, 148 |
| Conread position: | 33-411 |
| Cow position: | chr16:25344528-25344111 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 21, 158 |
| Conread position: | 33-416 |
| Cow position: | chr16:40293621-40294043 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 293 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-424 |
| Cow position: | chr16:42118292-42117874 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 50, 79 |
| Conread position: | 33-429 |
| Cow position: | chr16:7673912-7674343 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 301 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-429 |
| Cow position: | chr16:25444425-25443994 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 298 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 73, 27 |
| Conread position: | 33-429 |
| Cow position: | chr16:25454912-25455345 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 290 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 84, 21 |
| Conread position: | 33-430 |
| Cow position: | chr16:31586151-31586585 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 84, 153 |
| Conread position: | 37-280 |
| Cow position: | chr16:50712894-50713150 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 70, 153 |
| Conread position: | 37-288 |
| Cow position: | chr16:4461766-4462030 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 63, 153 |
| Conread position: | 37-288 |
| Cow position: | chr16:14100397-14100133 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 69, 124 |
| Conread position: | 37-310 |
| Cow position: | chr16:37454936-37455222 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 74, 149 |
| Conread position: | 37-383 |
| Cow position: | chr16:16032430-16032056 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 74, 131 |
| Conread position: | 37-388 |
| Cow position: | chr16:46102072-46102460 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 267 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 69, 153 |
| Conread position: | 37-389 |
| Cow position: | chr16:27710656-27711025 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 74, 122 |
| Conread position: | 37-389 |
| Cow position: | chr16:41624134-41624504 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 23, 148 |
| Conread position: | 37-410 |
| Cow position: | chr16:3148491-3148896 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 282 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 82, 147 |
| Conread position: | 38-324 |
| Cow position: | chr16:10859783-10860085 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 68, 146 |
| Conread position: | 40-416 |
| Cow position: | chr16:9610184-9610570 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 154 |
| Conread position: | 40-416 |
| Cow position: | chr16:50518731-50518359 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 42-424 |
| Cow position: | chr16:47476512-47476131 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 213, 38 |
| Conread position: | 44-406 |
| Cow position: | chr16:12160742-12161141 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 73, 154 |
| Conread position: | 44-410 |
| Cow position: | chr16:15570306-15569904 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 62, 10 |
| Conread position: | 45-268 |
| Cow position: | chr16:5435361-5435126 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 45-406 |
| Cow position: | chr16:15187604-15187207 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 45-429 |
| Cow position: | chr16:42863047-42863448 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 9 |
| Conread position: | 46-263 |
| Cow position: | chr16:37446162-37446392 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 71, 144 |
| Conread position: | 46-286 |
| Cow position: | chr16:18651046-18651298 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 71, 144 |
| Conread position: | 46-288 |
| Cow position: | chr16:41164235-41164490 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 71, 144 |
| Conread position: | 46-288 |
| Cow position: | chr16:41515668-41515413 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 151 |
| Conread position: | 46-292 |
| Cow position: | chr16:27010715-27010458 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 59, 102 |
| Conread position: | 46-376 |
| Cow position: | chr16:9590236-9589890 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 15, 193 |
| Conread position: | 46-382 |
| Cow position: | chr16:42074363-42074725 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 71, 54 |
| Conread position: | 46-383 |
| Cow position: | chr16:16102896-16103266 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 254 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 18, 136 |
| Conread position: | 46-384 |
| Cow position: | chr16:35036-34660 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 71, 144 |
| Conread position: | 46-406 |
| Cow position: | chr16:839817-839422 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 71, 151 |
| Conread position: | 46-410 |
| Cow position: | chr16:12535412-12535804 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 274 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 71, 134 |
| Conread position: | 46-410 |
| Cow position: | chr16:21018095-21017694 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 71, 144 |
| Conread position: | 46-424 |
| Cow position: | chr16:1651894-1651477 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 286 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 71, 133 |
| Conread position: | 46-428 |
| Cow position: | chr16:48104621-48104224 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 71, 127 |
| Conread position: | 46-429 |
| Cow position: | chr16:52526769-52526349 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 71, 144 |
| Conread position: | 53-415 |
| Cow position: | chr16:19066991-19066610 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 64, 181 |
| Conread position: | 55-289 |
| Cow position: | chr16:27105883-27105640 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 80, 131 |
| Conread position: | 59-402 |
| Cow position: | chr16:25173769-25173409 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 60-402 |
| Cow position: | chr16:9416056-9416413 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 54, 128 |
| Conread position: | 67-288 |
| Cow position: | chr16:340297-340063 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 123 |
| Conread position: | 167-415 |
| Cow position: | chr16:16960464-16960734 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 14 |
| Conread position: | 167-416 |
| Cow position: | chr16:2229769-2229500 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 69, 14 |
Show alignments to all cow chromosomes.