Cow genome map
| Conread name: | Ovi2-UMC-peov1-011-h11 |
| Conread position: | 1-273 |
| Cow position: | chr17:11767253-11766982 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 116, 34 |
| Conread position: | 1-275 |
| Cow position: | chr17:30413104-30412819 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 116, 22 |
| Conread position: | 1-288 |
| Cow position: | chr17:29229008-29228724 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 103, 35 |
| Conread position: | 1-289 |
| Cow position: | chr17:15191018-15191299 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 122, 39 |
| Conread position: | 1-324 |
| Cow position: | chr17:27483909-27483584 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 137, 33 |
| Conread position: | 7-290 |
| Cow position: | chr17:3328263-3327971 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 108, 45 |
| Conread position: | 26-382 |
| Cow position: | chr17:20055242-20054875 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 256 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 91, 9 |
| Conread position: | 29-410 |
| Cow position: | chr17:6071649-6071232 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 39, 162 |
| Conread position: | 31-429 |
| Cow position: | chr17:22052493-22052076 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 69, 19 |
| Conread position: | 33-226 |
| Cow position: | chr17:17957706-17957507 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 150 |
| Conread position: | 33-280 |
| Cow position: | chr17:2265298-2265044 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 86, 151 |
| Conread position: | 33-287 |
| Cow position: | chr17:11381422-11381158 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 84, 154 |
| Conread position: | 33-288 |
| Cow position: | chr17:184256-183988 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-288 |
| Cow position: | chr17:1883365-1883101 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 153 |
| Conread position: | 33-288 |
| Cow position: | chr17:15374514-15374253 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 82, 154 |
| Conread position: | 33-288 |
| Cow position: | chr17:16854988-16855253 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 33-288 |
| Cow position: | chr17:19215286-19215553 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 84, 156 |
| Conread position: | 33-288 |
| Cow position: | chr17:29950324-29950056 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-384 |
| Cow position: | chr17:27791673-27792053 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 86, 138 |
| Conread position: | 33-389 |
| Cow position: | chr17:1784432-1784830 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 266 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 84, 156 |
| Conread position: | 33-402 |
| Cow position: | chr17:1311653-1312059 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 78, 157 |
| Conread position: | 33-402 |
| Cow position: | chr17:15438900-15438507 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 275 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 84, 155 |
| Conread position: | 33-409 |
| Cow position: | chr17:13931004-13930593 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 84, 30 |
| Conread position: | 33-410 |
| Cow position: | chr17:138717-138307 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 84, 116 |
| Conread position: | 33-410 |
| Cow position: | chr17:15328390-15327975 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-416 |
| Cow position: | chr17:1654653-1655071 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 283 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 87, 163 |
| Conread position: | 33-426 |
| Cow position: | chr17:8222814-8222374 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 298 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-429 |
| Cow position: | chr17:6262965-6262533 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-429 |
| Cow position: | chr17:24026874-24027306 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-430 |
| Cow position: | chr17:29075246-29075655 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 71, 147 |
| Conread position: | 37-410 |
| Cow position: | chr17:25739401-25738999 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 80, 145 |
| Conread position: | 37-427 |
| Cow position: | chr17:16118354-16118767 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 78, 123 |
| Conread position: | 38-289 |
| Cow position: | chr17:1219870-1220134 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 79, 225 |
| Conread position: | 40-289 |
| Cow position: | chr17:35999611-35999869 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 77, 144 |
| Conread position: | 40-402 |
| Cow position: | chr17:15853835-15853432 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 45-379 |
| Cow position: | chr17:17221411-17221065 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 45-400 |
| Cow position: | chr17:1708633-1709025 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 45-400 |
| Cow position: | chr17:1711801-1712193 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 9 |
| Conread position: | 45-429 |
| Cow position: | chr17:22106538-22106960 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 290 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 72, 145 |
| Conread position: | 46-288 |
| Cow position: | chr17:731395-731647 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 71, 141 |
| Conread position: | 46-288 |
| Cow position: | chr17:14029250-14029504 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 71, 143 |
| Conread position: | 46-289 |
| Cow position: | chr17:148018-147761 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 71, 144 |
| Conread position: | 46-343 |
| Cow position: | chr17:30524-30220 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 27 |
| Conread position: | 46-382 |
| Cow position: | chr17:4063436-4063063 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 60, 144 |
| Conread position: | 46-382 |
| Cow position: | chr17:15809083-15808712 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 60, 144 |
| Conread position: | 46-389 |
| Cow position: | chr17:9752886-9752512 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 71, 144 |
| Conread position: | 46-424 |
| Cow position: | chr17:10843358-10842953 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 56, 44 |
| Conread position: | 48-429 |
| Cow position: | chr17:14242922-14242510 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 69, 7 |
| Conread position: | 53-415 |
| Cow position: | chr17:18721790-18722189 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 64, 12 |
| Conread position: | 61-410 |
| Cow position: | chr17:14899803-14899417 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 126 |
| Conread position: | 83-276 |
| Cow position: | chr17:26474488-26474286 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 112-427 |
| Cow position: | chr17:39913468-39913803 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 49, 76 |
Show alignments to all cow chromosomes.