Cow genome map
| Conread name: | Ovi2-UMC-peov1-011-h11 |
| Conread position: | 1-288 |
| Cow position: | chr18:22682148-22681854 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 1-318 |
| Cow position: | chr18:51300619-51300293 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 116, 41 |
| Conread position: | 1-325 |
| Cow position: | chr18:42075245-42074906 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 131, 41 |
| Conread position: | 1-414 |
| Cow position: | chr18:51331205-51330793 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 288 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 115, 49 |
| Conread position: | 1-431 |
| Cow position: | chr18:17997278-17997737 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 108, 49 |
| Conread position: | 3-411 |
| Cow position: | chr18:17454656-17455086 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 292 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 101, 33 |
| Conread position: | 3-413 |
| Cow position: | chr18:47999387-47999815 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 99, 22 |
| Conread position: | 33-282 |
| Cow position: | chr18:17335408-17335665 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 58, 152 |
| Conread position: | 33-282 |
| Cow position: | chr18:36511966-36511704 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-288 |
| Cow position: | chr18:19355845-19355579 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 84, 155 |
| Conread position: | 33-288 |
| Cow position: | chr18:29240419-29240150 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 33-288 |
| Cow position: | chr18:35293448-35293185 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 84, 154 |
| Conread position: | 33-288 |
| Cow position: | chr18:37509300-37509033 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 84, 156 |
| Conread position: | 33-288 |
| Cow position: | chr18:40195444-40195177 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 84, 27 |
| Conread position: | 33-307 |
| Cow position: | chr18:23688504-23688216 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-378 |
| Cow position: | chr18:33607567-33607193 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 84, 156 |
| Conread position: | 33-410 |
| Cow position: | chr18:14127954-14128358 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 87, 155 |
| Conread position: | 33-410 |
| Cow position: | chr18:16173281-16173695 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 84, 153 |
| Conread position: | 33-410 |
| Cow position: | chr18:29863272-29863687 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr18:33522559-33522173 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 74, 157 |
| Conread position: | 33-410 |
| Cow position: | chr18:36776608-36776193 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 282 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 33-410 |
| Cow position: | chr18:38158210-38158623 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr18:51484923-51484508 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 67, 157 |
| Conread position: | 33-411 |
| Cow position: | chr18:5536304-5535890 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 288 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 84, 152 |
| Conread position: | 33-424 |
| Cow position: | chr18:17323712-17323299 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 84, 150 |
| Conread position: | 34-288 |
| Cow position: | chr18:19310498-19310231 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 72, 156 |
| Conread position: | 34-410 |
| Cow position: | chr18:27990088-27989674 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 68, 156 |
| Conread position: | 37-288 |
| Cow position: | chr18:27539760-27539497 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 153 |
| Conread position: | 37-410 |
| Cow position: | chr18:28968961-28969368 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 69, 153 |
| Conread position: | 40-296 |
| Cow position: | chr18:5569866-5569602 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 118 |
| Conread position: | 45-429 |
| Cow position: | chr18:29014147-29014548 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 44, 73 |
| Conread position: | 46-226 |
| Cow position: | chr18:12996887-12996703 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 69, 142 |
| Conread position: | 46-287 |
| Cow position: | chr18:6733644-6733897 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 60, 143 |
| Conread position: | 46-380 |
| Cow position: | chr18:41156479-41156127 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 13, 114 |
| Conread position: | 46-382 |
| Cow position: | chr18:52629939-52630312 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 71, 109 |
| Conread position: | 46-389 |
| Cow position: | chr18:21811299-21810942 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 71, 151 |
| Conread position: | 46-410 |
| Cow position: | chr18:25923705-25923303 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 71, 152 |
| Conread position: | 46-410 |
| Cow position: | chr18:54065753-54066132 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 259 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 46-411 |
| Cow position: | chr18:39412143-39411757 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 65, 139 |
| Conread position: | 46-431 |
| Cow position: | chr18:15853690-15853299 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 176, 65 |
| Conread position: | 47-410 |
| Cow position: | chr18:40484319-40483913 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 277 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 7, 151 |
| Conread position: | 47-411 |
| Cow position: | chr18:29767747-29767362 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 70, 137 |
| Conread position: | 47-430 |
| Cow position: | chr18:36209056-36209475 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 70, 149 |
| Conread position: | 48-389 |
| Cow position: | chr18:52656125-52655745 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 5, 143 |
| Conread position: | 48-390 |
| Cow position: | chr18:39812320-39812694 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 68, 33 |
| Conread position: | 49-416 |
| Cow position: | chr18:13508747-13509139 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 68, 25 |
| Conread position: | 53-288 |
| Cow position: | chr18:54033030-54032782 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 53, 137 |
| Conread position: | 59-424 |
| Cow position: | chr18:26550067-26549670 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 58, 128 |
| Conread position: | 110-419 |
| Cow position: | chr18:25200000-25199690 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 174, 51 |
| Conread position: | 126-405 |
| Cow position: | chr18:23855699-23855426 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 36, 56 |
Show alignments to all cow chromosomes.