Cow genome map
| Conread name: | Ovi2-UMC-peov1-011-h11 |
| Conread position: | 1-275 |
| Cow position: | chr19:16830492-16830775 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 68, 29 |
| Conread position: | 1-405 |
| Cow position: | chr19:47100227-47099809 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 115, 48 |
| Conread position: | 4-214 |
| Cow position: | chr19:24214238-24214022 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 101, 46 |
| Conread position: | 9-416 |
| Cow position: | chr19:5633148-5633558 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 134, 41 |
| Conread position: | 22-288 |
| Cow position: | chr19:1293698-1293421 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 81, 12 |
| Conread position: | 29-288 |
| Cow position: | chr19:175807-175538 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 77, 11 |
| Conread position: | 29-431 |
| Cow position: | chr19:4551798-4552201 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 79, 42 |
| Conread position: | 33-238 |
| Cow position: | chr19:27082076-27082288 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 86, 151 |
| Conread position: | 33-260 |
| Cow position: | chr19:39394539-39394299 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 84, 165 |
| Conread position: | 33-284 |
| Cow position: | chr19:1585855-1585592 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-288 |
| Cow position: | chr19:197346-197083 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 84, 153 |
| Conread position: | 33-288 |
| Cow position: | chr19:10613566-10613298 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-288 |
| Cow position: | chr19:36351607-36351348 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 69, 151 |
| Conread position: | 33-288 |
| Cow position: | chr19:45464472-45464216 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 63, 54 |
| Conread position: | 33-292 |
| Cow position: | chr19:799715-799444 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-384 |
| Cow position: | chr19:40016248-40016637 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 61, 158 |
| Conread position: | 33-406 |
| Cow position: | chr19:16478529-16478938 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 285 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 73, 163 |
| Conread position: | 33-410 |
| Cow position: | chr19:436000-436413 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 78, 127 |
| Conread position: | 33-410 |
| Cow position: | chr19:2269963-2270374 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr19:4388921-4388506 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 33-410 |
| Cow position: | chr19:5732833-5732426 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 83, 162 |
| Conread position: | 33-410 |
| Cow position: | chr19:28794987-28795393 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 280 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 85, 110 |
| Conread position: | 33-410 |
| Cow position: | chr19:33876754-33876340 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr19:39182202-39182615 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 82, 157 |
| Conread position: | 33-410 |
| Cow position: | chr19:40849151-40849564 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 33-429 |
| Cow position: | chr19:12776447-12776031 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 73, 26 |
| Conread position: | 33-430 |
| Cow position: | chr19:2588527-2588093 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 293 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 37-416 |
| Cow position: | chr19:28369855-28369452 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 79, 150 |
| Conread position: | 42-377 |
| Cow position: | chr19:14251015-14250684 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 244, 82 |
| Conread position: | 43-288 |
| Cow position: | chr19:28450152-28449896 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 74, 11 |
| Conread position: | 43-426 |
| Cow position: | chr19:28801244-28801654 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 74, 143 |
| Conread position: | 43-430 |
| Cow position: | chr19:5024032-5024440 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 74, 121 |
| Conread position: | 44-410 |
| Cow position: | chr19:30518131-30517726 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 73, 147 |
| Conread position: | 45-288 |
| Cow position: | chr19:22512570-22512315 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 46-275 |
| Cow position: | chr19:35381749-35381986 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 60, 141 |
| Conread position: | 46-277 |
| Cow position: | chr19:36708060-36708297 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 69, 130 |
| Conread position: | 46-280 |
| Cow position: | chr19:42580990-42581228 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 54, 138 |
| Conread position: | 46-288 |
| Cow position: | chr19:776838-776584 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 71, 140 |
| Conread position: | 46-289 |
| Cow position: | chr19:37653500-37653246 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 71, 144 |
| Conread position: | 46-289 |
| Cow position: | chr19:39726114-39725868 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 66, 139 |
| Conread position: | 46-324 |
| Cow position: | chr19:29628529-29628817 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 71, 135 |
| Conread position: | 46-343 |
| Cow position: | chr19:5716261-5716577 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 143 |
| Conread position: | 46-402 |
| Cow position: | chr19:37844455-37844845 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 69, 143 |
| Conread position: | 46-414 |
| Cow position: | chr19:18359023-18359379 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 264 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 73, 51 |
| Conread position: | 47-402 |
| Cow position: | chr19:33944891-33944498 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 273 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 70, 143 |
| Conread position: | 48-280 |
| Cow position: | chr19:15154596-15154838 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 68, 111 |
| Conread position: | 49-416 |
| Cow position: | chr19:30473827-30474230 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 68, 115 |
| Conread position: | 59-280 |
| Cow position: | chr19:14527952-14527728 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 58, 41 |
| Conread position: | 59-288 |
| Cow position: | chr19:7491399-7491170 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 121 |
| Conread position: | 61-288 |
| Cow position: | chr19:5110035-5110263 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 95 |
| Conread position: | 62-280 |
| Cow position: | chr19:33674914-33675140 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 10, 123 |
| Conread position: | 151-416 |
| Cow position: | chr19:44754888-44755150 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 8, 24 |
Show alignments to all cow chromosomes.