Cow genome map
| Conread name: | Ovi2-UMC-peov1-011-h11 |
| Conread position: | 1-104 |
| Cow position: | chr21:22369130-22369031 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-209 |
| Cow position: | chr21:13286603-13286398 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 109, 42 |
| Conread position: | 1-382 |
| Cow position: | chr21:20773281-20772875 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 56, 185 |
| Conread position: | 1-385 |
| Cow position: | chr21:33307404-33307004 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 116, 13 |
| Conread position: | 1-416 |
| Cow position: | chr21:32894784-32895227 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 106, 41 |
| Conread position: | 1-424 |
| Cow position: | chr21:30161792-30162224 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 35 |
| Conread position: | 25-280 |
| Cow position: | chr21:2419613-2419352 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 31-410 |
| Cow position: | chr21:40267997-40268394 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 159 |
| Conread position: | 33-288 |
| Cow position: | chr21:3804369-3804637 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 82, 157 |
| Conread position: | 33-288 |
| Cow position: | chr21:17144099-17143832 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 84, 153 |
| Conread position: | 33-288 |
| Cow position: | chr21:36534797-36535065 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-306 |
| Cow position: | chr21:47944370-47944087 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 33-328 |
| Cow position: | chr21:37374619-37374305 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 29 |
| Conread position: | 33-402 |
| Cow position: | chr21:2664754-2665136 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 84, 133 |
| Conread position: | 33-404 |
| Cow position: | chr21:24826723-24827130 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr21:149558-149146 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 287 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr21:1195949-1195536 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 156 |
| Conread position: | 33-410 |
| Cow position: | chr21:1685774-1686179 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 82, 302 |
| Conread position: | 33-410 |
| Cow position: | chr21:5020557-5020142 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 288 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr21:13111987-13112394 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 84, 40 |
| Conread position: | 33-410 |
| Cow position: | chr21:31512859-31513272 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 84, 156 |
| Conread position: | 33-410 |
| Cow position: | chr21:33256967-33256552 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 288 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr21:33316955-33317370 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 285 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 84, 153 |
| Conread position: | 33-411 |
| Cow position: | chr21:3782184-3781772 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 278 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-416 |
| Cow position: | chr21:4097986-4097590 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 58, 116 |
| Conread position: | 33-427 |
| Cow position: | chr21:27125307-27125739 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 75, 116 |
| Conread position: | 33-429 |
| Cow position: | chr21:48291940-48292366 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 293 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 34-288 |
| Cow position: | chr21:6623223-6622968 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 86, 20 |
| Conread position: | 37-288 |
| Cow position: | chr21:30565161-30564897 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 80, 149 |
| Conread position: | 37-384 |
| Cow position: | chr21:21026881-21026534 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 112, 75 |
| Conread position: | 37-410 |
| Cow position: | chr21:27608295-27608704 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 80, 29 |
| Conread position: | 38-430 |
| Cow position: | chr21:24887056-24886628 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 79, 93 |
| Conread position: | 40-411 |
| Cow position: | chr21:11327522-11327905 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 42-289 |
| Cow position: | chr21:44262606-44262347 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 75, 55 |
| Conread position: | 42-406 |
| Cow position: | chr21:32189987-32189605 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 117, 135 |
| Conread position: | 44-325 |
| Cow position: | chr21:22944211-22943912 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 73, 145 |
| Conread position: | 45-288 |
| Cow position: | chr21:27066201-27066456 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 61, 10 |
| Conread position: | 45-288 |
| Cow position: | chr21:32396626-32396877 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 70, 9 |
| Conread position: | 45-384 |
| Cow position: | chr21:27620102-27620471 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 72, 9 |
| Conread position: | 45-389 |
| Cow position: | chr21:27343000-27343382 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 61, 10 |
| Conread position: | 46-279 |
| Cow position: | chr21:13314848-13314608 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 105 |
| Conread position: | 46-288 |
| Cow position: | chr21:27287377-27287125 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 71, 124 |
| Conread position: | 46-324 |
| Cow position: | chr21:5076143-5075860 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 147, 108 |
| Conread position: | 46-410 |
| Cow position: | chr21:26400366-26400768 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 60, 144 |
| Conread position: | 46-410 |
| Cow position: | chr21:28915577-28915974 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 71, 138 |
| Conread position: | 46-417 |
| Cow position: | chr21:3108960-3109345 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 111, 131 |
| Conread position: | 53-384 |
| Cow position: | chr21:30654960-30654597 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 66, 131 |
| Conread position: | 59-324 |
| Cow position: | chr21:7155773-7155490 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 41, 149 |
| Conread position: | 59-416 |
| Cow position: | chr21:32203625-32203230 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 64-410 |
| Cow position: | chr21:44762581-44762965 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 53, 133 |
| Conread position: | 67-301 |
| Cow position: | chr21:404233-404471 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 54, 71 |
| Conread position: | 126-427 |
| Cow position: | chr21:22750150-22750470 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 137-424 |
| Cow position: | chr21:38241620-38241927 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 45 |
| Conread position: | 187-424 |
| Cow position: | chr21:13286137-13285887 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 88, 27 |
Show alignments to all cow chromosomes.