Cow genome map
| Conread name: | Ovi2-UMC-peov1-011-h11 |
| Conread position: | 1-240 |
| Cow position: | chr28:20373684-20373441 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 114, 35 |
| Conread position: | 1-274 |
| Cow position: | chr28:22234175-22234455 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 210 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 109, 50 |
| Conread position: | 1-274 |
| Cow position: | chr28:22485778-22485503 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 67, 49 |
| Conread position: | 1-290 |
| Cow position: | chr28:12700951-12700658 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 73, 50 |
| Conread position: | 1-425 |
| Cow position: | chr28:10326366-10325918 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 51 |
| Conread position: | 2-288 |
| Cow position: | chr28:31850529-31850821 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 115, 48 |
| Conread position: | 3-411 |
| Cow position: | chr28:20629785-20630215 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 44 |
| Conread position: | 7-379 |
| Cow position: | chr28:23916377-23915975 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 98, 44 |
| Conread position: | 7-389 |
| Cow position: | chr28:17745038-17745415 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 105, 7 |
| Conread position: | 7-426 |
| Cow position: | chr28:22553822-22553384 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 14 |
| Conread position: | 10-431 |
| Cow position: | chr28:3920901-3920456 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 39 |
| Conread position: | 25-429 |
| Cow position: | chr28:5816929-5816498 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 282 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 92, 34 |
| Conread position: | 30-376 |
| Cow position: | chr28:4457596-4457225 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 40, 24 |
| Conread position: | 30-429 |
| Cow position: | chr28:1214549-1214984 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 85, 160 |
| Conread position: | 33-282 |
| Cow position: | chr28:13463241-13462979 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-287 |
| Cow position: | chr28:21768015-21768282 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-288 |
| Cow position: | chr28:5211400-5211132 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-288 |
| Cow position: | chr28:6959507-6959239 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 33-288 |
| Cow position: | chr28:17391711-17391443 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 33-288 |
| Cow position: | chr28:17663671-17663939 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-288 |
| Cow position: | chr28:22254920-22255188 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-289 |
| Cow position: | chr28:4214170-4213904 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 108 |
| Conread position: | 33-324 |
| Cow position: | chr28:14150266-14149956 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 151 |
| Conread position: | 33-379 |
| Cow position: | chr28:10479613-10479980 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 21 |
| Conread position: | 33-382 |
| Cow position: | chr28:482430-482817 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-382 |
| Cow position: | chr28:15917247-15917634 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-382 |
| Cow position: | chr28:16181646-16181259 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-382 |
| Cow position: | chr28:28929111-28928727 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 73, 150 |
| Conread position: | 33-384 |
| Cow position: | chr28:5637328-5636940 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 84, 117 |
| Conread position: | 33-384 |
| Cow position: | chr28:20967391-20967780 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-387 |
| Cow position: | chr28:21379773-21379392 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 84, 146 |
| Conread position: | 33-389 |
| Cow position: | chr28:6047074-6046681 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-402 |
| Cow position: | chr28:10772361-10771956 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-409 |
| Cow position: | chr28:5940764-5940350 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 281 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr28:5748428-5748843 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 285 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr28:7005305-7004889 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 287 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 84, 164 |
| Conread position: | 33-410 |
| Cow position: | chr28:18516868-18517281 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 281 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 82, 156 |
| Conread position: | 33-410 |
| Cow position: | chr28:20935134-20935550 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 285 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr28:29036374-29036789 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr28:30098154-30097741 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 72, 26 |
| Conread position: | 33-410 |
| Cow position: | chr28:32786149-32786560 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 282 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 84, 153 |
| Conread position: | 33-416 |
| Cow position: | chr28:21569171-21568763 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 94, 132 |
| Conread position: | 33-429 |
| Cow position: | chr28:26419723-26420154 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 84, 133 |
| Conread position: | 33-429 |
| Cow position: | chr28:34597522-34597093 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 37-288 |
| Cow position: | chr28:15032804-15033068 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 80, 160 |
| Conread position: | 37-390 |
| Cow position: | chr28:23620237-23619851 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 263 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 78, 122 |
| Conread position: | 37-404 |
| Cow position: | chr28:22230058-22230460 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 80, 155 |
| Conread position: | 38-410 |
| Cow position: | chr28:5111448-5111856 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 79, 152 |
| Conread position: | 46-280 |
| Cow position: | chr28:1777826-1777582 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 69, 143 |
| Conread position: | 46-288 |
| Cow position: | chr28:7336248-7335993 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 71, 144 |
| Conread position: | 46-288 |
| Cow position: | chr28:21362777-21362524 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 71, 109 |
| Conread position: | 46-289 |
| Cow position: | chr28:8616018-8616262 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 74, 132 |
| Conread position: | 46-328 |
| Cow position: | chr28:22201220-22200923 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 71, 100 |
| Conread position: | 46-384 |
| Cow position: | chr28:30369199-30368838 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 63, 117 |
| Conread position: | 46-391 |
| Cow position: | chr28:21629937-21629572 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 313 |
| Conread position: | 46-416 |
| Cow position: | chr28:27030062-27030455 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 87, 58 |
| Conread position: | 46-430 |
| Cow position: | chr28:34730997-34730577 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 71, 144 |
| Conread position: | 47-282 |
| Cow position: | chr28:7744361-7744119 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 55, 137 |
| Conread position: | 47-288 |
| Cow position: | chr28:29823450-29823196 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 70, 143 |
| Conread position: | 47-410 |
| Cow position: | chr28:33255585-33255185 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 70, 143 |
| Conread position: | 47-431 |
| Cow position: | chr28:17249321-17249739 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 59, 104 |
| Conread position: | 48-411 |
| Cow position: | chr28:6842267-6842658 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 69, 147 |
| Conread position: | 49-290 |
| Cow position: | chr28:23675076-23674823 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 138 |
| Conread position: | 55-279 |
| Cow position: | chr28:18145450-18145682 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 62, 98 |
| Conread position: | 59-410 |
| Cow position: | chr28:33639822-33639433 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 272 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 47, 138 |
| Conread position: | 60-280 |
| Cow position: | chr28:25596154-25595921 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 106 |
| Conread position: | 110-389 |
| Cow position: | chr28:3652427-3652131 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 45, 72 |
| Conread position: | 112-393 |
| Cow position: | chr28:26563370-26563073 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 48, 71 |
| Conread position: | 117-416 |
| Cow position: | chr28:33992400-33992080 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 78 |
Show alignments to all cow chromosomes.