Cow genome map

Conread name: Ovi2-UMC-peov1-011-h11

Conread position: 1-247
Cow position: chr3:29801999-29801739 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 184
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 116, 49

Conread position: 1-262
Cow position: chr3:31383777-31384029 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 183
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 75, 49

Conread position: 1-411
Cow position: chr3:16884114-16884538 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 35

Conread position: 1-411
Cow position: chr3:69442381-69442802 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 275
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 114, 34

Conread position: 1-425
Cow position: chr3:22044970-22045420 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 306
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 126, 47

Conread position: 1-430
Cow position: chr3:27091000-27091436 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 293
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 83, 49

Conread position: 1-431
Cow position: chr3:57977361-57977795 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 302
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 83, 59

Conread position: 2-277
Cow position: chr3:54778124-54777840 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 186
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 104, 40

Conread position: 4-247
Cow position: chr3:61882698-61882449 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 175
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 102, 32

Conread position: 7-275
Cow position: chr3:44504360-44504639 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 25, 44

Conread position: 7-417
Cow position: chr3:74140725-74141168 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 317
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 97, 28

Conread position: 9-424
Cow position: chr3:48215298-48215714 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 293
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 102, 41

Conread position: 9-430
Cow position: chr3:13466187-13466632 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 303
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 94, 41

Conread position: 12-288
Cow position: chr3:24638595-24638306 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 45, 7

Conread position: 25-405
Cow position: chr3:60150994-60150595 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 262
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 92, 35

Conread position: 30-289
Cow position: chr3:67451012-67450750 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 183
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 85, 20

Conread position: 32-411
Cow position: chr3:27866819-27866406 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 274
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 83, 18

Conread position: 33-276
Cow position: chr3:6875118-6875367 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 75, 156

Conread position: 33-280
Cow position: chr3:13115274-13115533 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 186
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 84, 157

Conread position: 33-282
Cow position: chr3:2790914-2790652 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 73, 157

Conread position: 33-286
Cow position: chr3:66736409-66736668 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 172
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 66, 150

Conread position: 33-287
Cow position: chr3:39856626-39856359 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 188
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 84, 157

Conread position: 33-288
Cow position: chr3:2707706-2707974 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 196
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 84, 157

Conread position: 33-288
Cow position: chr3:5951453-5951721 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 191
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 84, 157

Conread position: 33-288
Cow position: chr3:24265361-24265097 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 186
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 84, 149

Conread position: 33-288
Cow position: chr3:24573004-24573266 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 177
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 84, 151

Conread position: 33-288
Cow position: chr3:33269394-33269133 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 84, 157

Conread position: 33-288
Cow position: chr3:42846507-42846248 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 189
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 69, 33

Conread position: 33-288
Cow position: chr3:49134374-49134642 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 188
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 84, 153

Conread position: 33-288
Cow position: chr3:54654012-54654282 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 187
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 72, 157

Conread position: 33-288
Cow position: chr3:56148455-56148188 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 82, 157

Conread position: 33-288
Cow position: chr3:63276701-63276958 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 184
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 84, 152

Conread position: 33-288
Cow position: chr3:65178172-65177905 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 70, 156

Conread position: 33-288
Cow position: chr3:72633236-72632967 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 84, 164

Conread position: 33-289
Cow position: chr3:63688748-63688996 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 179
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 124, 39

Conread position: 33-379
Cow position: chr3:42977427-42977805 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 259
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 86, 151

Conread position: 33-382
Cow position: chr3:26742710-26743095 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 258
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 84, 157

Conread position: 33-382
Cow position: chr3:74060632-74060250 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 264
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 84, 156

Conread position: 33-382
Cow position: chr3:77581760-77581391 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 245
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 87, 31

Conread position: 33-385
Cow position: chr3:45184822-45185209 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 269
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 73, 155

Conread position: 33-402
Cow position: chr3:76000798-76001199 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 277
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 78, 140

Conread position: 33-406
Cow position: chr3:81101241-81100838 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 286
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 84, 157

Conread position: 33-410
Cow position: chr3:13276119-13276529 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 285
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 73, 133

Conread position: 33-410
Cow position: chr3:18814669-18814254 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 282
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 84, 157

Conread position: 33-410
Cow position: chr3:21179096-21179508 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 284
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 84, 157

Conread position: 33-410
Cow position: chr3:23204512-23204925 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 289
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 84, 42

Conread position: 33-410
Cow position: chr3:38869730-38869322 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 279
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 67, 151

Conread position: 33-410
Cow position: chr3:56645168-56645582 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 282
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 84, 164

Conread position: 33-410
Cow position: chr3:69930671-69931086 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 279
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 84, 157

Conread position: 33-410
Cow position: chr3:75038679-75039094 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 284
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 84, 157

Conread position: 33-410
Cow position: chr3:78024273-78024682 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 278
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 84, 158

Conread position: 33-411
Cow position: chr3:57481574-57481989 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 288
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 73, 164

Conread position: 33-424
Cow position: chr3:23010514-23010105 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 276
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 127, 24

Conread position: 33-426
Cow position: chr3:19942055-19941625 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 284
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 72, 158

Conread position: 33-429
Cow position: chr3:24442940-24443363 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 300
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 13, 22

Conread position: 33-429
Cow position: chr3:36874898-36875336 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 290
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 84, 157

Conread position: 33-429
Cow position: chr3:38096062-38095630 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 288
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 84, 157

Conread position: 34-288
Cow position: chr3:5497278-5497537 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 86, 150

Conread position: 34-289
Cow position: chr3:46505932-46505662 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 183
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 22, 158

Conread position: 34-429
Cow position: chr3:57742675-57742252 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 287
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 83, 109

Conread position: 35-389
Cow position: chr3:32220885-32220501 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 259
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 155

Conread position: 37-288
Cow position: chr3:13311845-13312111 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 180
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 27, 155

Conread position: 37-289
Cow position: chr3:72105500-72105768 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 187
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 78, 127

Conread position: 37-412
Cow position: chr3:25689816-25689401 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 283
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 57, 113

Conread position: 37-429
Cow position: chr3:10243818-10243392 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 300
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 69, 151

Conread position: 38-280
Cow position: chr3:15663286-15663534 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 168
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 79, 146

Conread position: 39-287
Cow position: chr3:5445753-5446016 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 8, 153

Conread position: 39-399
Cow position: chr3:35612310-35611914 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 268
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 67, 15

Conread position: 40-280
Cow position: chr3:8563907-8564158 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 177
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 71, 99

Conread position: 40-289
Cow position: chr3:38252000-38251747 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 174
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 80, 72

Conread position: 40-289
Cow position: chr3:54087210-54087477 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 67, 161

Conread position: 42-402
Cow position: chr3:3653133-3653528 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 268
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 66, 148

Conread position: 43-288
Cow position: chr3:19111823-19112077 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 86, 145

Conread position: 45-289
Cow position: chr3:27783155-27783406 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 181
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 72, 145

Conread position: 45-384
Cow position: chr3:49907883-49908242 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 249
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 72, 9

Conread position: 46-230
Cow position: chr3:24455875-24456063 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 71, 20

Conread position: 46-253
Cow position: chr3:65877257-65877040 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 69, 141

Conread position: 46-279
Cow position: chr3:11384468-11384220 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 182
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 71, 108

Conread position: 46-287
Cow position: chr3:52202819-52202574 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 178
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 71, 31

Conread position: 46-288
Cow position: chr3:21004962-21004710 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 171
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 70, 141

Conread position: 46-289
Cow position: chr3:40826548-40826291 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 188
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 71, 0

Conread position: 46-324
Cow position: chr3:67545450-67545740 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 200
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 71, 127

Conread position: 46-384
Cow position: chr3:7245954-7246330 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 257
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 71, 144

Conread position: 46-389
Cow position: chr3:58953306-58952931 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 254
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 71, 144

Conread position: 46-412
Cow position: chr3:53047643-53048037 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 265
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 60, 150

Conread position: 46-427
Cow position: chr3:14881373-14881790 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 299
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 47, 151

Conread position: 46-429
Cow position: chr3:6864810-6864398 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 277
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 60, 144

Conread position: 47-294
Cow position: chr3:34087048-34087306 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 180
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 7, 144

Conread position: 47-382
Cow position: chr3:44926962-44926591 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 249
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 63, 142

Conread position: 57-410
Cow position: chr3:49542062-49542453 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 270
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 60, 133

Conread position: 58-429
Cow position: chr3:63000231-63000630 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 266
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 52, 121

Conread position: 59-388
Cow position: chr3:45615473-45615122 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 240
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 58, 127

Conread position: 60-416
Cow position: chr3:56153434-56153048 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 274
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 44, 12

Conread position: 67-410
Cow position: chr3:19753598-19753980 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 265
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 50, 123

Conread position: 67-424
Cow position: chr3:66043795-66044189 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 274
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 44, 127

Conread position: 99-411
Cow position: chr3:48034189-48034516 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 226
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 9, 84

Conread position: 99-430
Cow position: chr3:45691953-45692294 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 238
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 9, 84

Conread position: 177-424
Cow position: chr3:1505090-1504830 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 181
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 36, 40

Conread position: 222-426
Cow position: chr3:77622736-77622535 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 140, 31

Show alignments to all cow chromosomes.