Cow genome map
| Conread name: | Ovi2-UMC-peov1-011-h11 |
| Conread position: | 1-191 |
| Cow position: | chr5:21557492-21557678 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 1-377 |
| Cow position: | chr5:41575399-41575006 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 269 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 116, 49 |
| Conread position: | 1-411 |
| Cow position: | chr5:45284523-45284950 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 105, 49 |
| Conread position: | 1-419 |
| Cow position: | chr5:28331528-28331959 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 308 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 115, 49 |
| Conread position: | 3-370 |
| Cow position: | chr5:49154362-49154740 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 132, 32 |
| Conread position: | 3-424 |
| Cow position: | chr5:29674303-29673883 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 111, 32 |
| Conread position: | 4-302 |
| Cow position: | chr5:24240201-24239898 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 113, 46 |
| Conread position: | 5-280 |
| Cow position: | chr5:63312426-63312709 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 112, 19 |
| Conread position: | 7-294 |
| Cow position: | chr5:21220741-21221025 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 108, 35 |
| Conread position: | 10-325 |
| Cow position: | chr5:50166599-50166275 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 86, 40 |
| Conread position: | 25-402 |
| Cow position: | chr5:41228973-41229381 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 285 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 5, 27 |
| Conread position: | 30-410 |
| Cow position: | chr5:48805380-48805797 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 76, 160 |
| Conread position: | 32-288 |
| Cow position: | chr5:18250121-18249859 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 85, 6 |
| Conread position: | 33-275 |
| Cow position: | chr5:52829716-52829967 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 86, 151 |
| Conread position: | 33-275 |
| Cow position: | chr5:55631132-55630877 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-282 |
| Cow position: | chr5:10921913-10921650 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-282 |
| Cow position: | chr5:47560493-47560755 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-288 |
| Cow position: | chr5:2917530-2917264 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 69, 155 |
| Conread position: | 33-288 |
| Cow position: | chr5:3544376-3544108 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-288 |
| Cow position: | chr5:12921467-12921199 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 8, 158 |
| Conread position: | 33-288 |
| Cow position: | chr5:46685547-46685811 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 73, 116 |
| Conread position: | 33-288 |
| Cow position: | chr5:49117283-49117551 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 33-294 |
| Cow position: | chr5:48574753-48575020 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 33-296 |
| Cow position: | chr5:28571616-28571340 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-384 |
| Cow position: | chr5:11631917-11632306 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-389 |
| Cow position: | chr5:7396316-7395927 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 272 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 84, 156 |
| Conread position: | 33-402 |
| Cow position: | chr5:51166241-51166645 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr5:7276900-7276487 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 84, 152 |
| Conread position: | 33-410 |
| Cow position: | chr5:19978846-19979262 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 33-410 |
| Cow position: | chr5:30582394-30581990 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 279 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 84, 153 |
| Conread position: | 33-410 |
| Cow position: | chr5:32755376-32755790 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr5:37735444-37735028 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 289 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-410 |
| Cow position: | chr5:58770803-58771216 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 285 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 69, 21 |
| Conread position: | 33-411 |
| Cow position: | chr5:3789296-3788881 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-429 |
| Cow position: | chr5:1338853-1339287 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 84, 116 |
| Conread position: | 33-429 |
| Cow position: | chr5:24299081-24298650 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 33-430 |
| Cow position: | chr5:25901406-25901832 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 157 |
| Conread position: | 37-288 |
| Cow position: | chr5:54786044-54786308 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 78, 153 |
| Conread position: | 37-429 |
| Cow position: | chr5:46735212-46735640 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 299 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 69, 153 |
| Conread position: | 40-280 |
| Cow position: | chr5:17027140-17026886 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 151 |
| Conread position: | 40-384 |
| Cow position: | chr5:48026332-48025949 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 16, 117 |
| Conread position: | 43-289 |
| Cow position: | chr5:58012746-58013004 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 127 |
| Conread position: | 43-402 |
| Cow position: | chr5:31120148-31120545 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 44-384 |
| Cow position: | chr5:5924911-5925280 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 11, 137 |
| Conread position: | 44-415 |
| Cow position: | chr5:55358227-55357845 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 45-410 |
| Cow position: | chr5:6151777-6152179 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 45-410 |
| Cow position: | chr5:18558348-18558749 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 66, 152 |
| Conread position: | 45-410 |
| Cow position: | chr5:49521759-49521367 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 273 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 75, 10 |
| Conread position: | 45-411 |
| Cow position: | chr5:17646030-17646417 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 75, 9 |
| Conread position: | 46-271 |
| Cow position: | chr5:40791891-40791658 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 68, 140 |
| Conread position: | 46-274 |
| Cow position: | chr5:51069261-51069026 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 83, 141 |
| Conread position: | 46-280 |
| Cow position: | chr5:6986430-6986677 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 144 |
| Conread position: | 46-288 |
| Cow position: | chr5:10542616-10542870 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 41 |
| Conread position: | 46-288 |
| Cow position: | chr5:46817047-46817302 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 71, 144 |
| Conread position: | 46-288 |
| Cow position: | chr5:49221438-49221692 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 71, 115 |
| Conread position: | 46-288 |
| Cow position: | chr5:73485844-73486098 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 58, 144 |
| Conread position: | 46-379 |
| Cow position: | chr5:12729105-12729453 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 111, 66 |
| Conread position: | 46-389 |
| Cow position: | chr5:29742502-29742882 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 71, 151 |
| Conread position: | 46-410 |
| Cow position: | chr5:5716020-5716400 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 267 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 111, 70 |
| Conread position: | 46-425 |
| Cow position: | chr5:30360399-30360800 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 148 |
| Conread position: | 46-429 |
| Cow position: | chr5:10853777-10854191 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 287 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 65, 142 |
| Conread position: | 46-430 |
| Cow position: | chr5:47697151-47697565 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 71, 134 |
| Conread position: | 47-283 |
| Cow position: | chr5:46676667-46676418 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 70, 143 |
| Conread position: | 47-289 |
| Cow position: | chr5:26058175-26057930 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 70, 133 |
| Conread position: | 47-410 |
| Cow position: | chr5:14636524-14636925 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 280 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 70, 143 |
| Conread position: | 48-416 |
| Cow position: | chr5:62204552-62204165 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 124 |
| Conread position: | 48-429 |
| Cow position: | chr5:3501075-3501491 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 286 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 58, 142 |
| Conread position: | 60-382 |
| Cow position: | chr5:26120470-26120124 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 57, 128 |
| Conread position: | 67-430 |
| Cow position: | chr5:6189931-6189528 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 122 |
| Conread position: | 73-288 |
| Cow position: | chr5:6840193-6840421 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 117 |
| Conread position: | 88-431 |
| Cow position: | chr5:26403914-26404267 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 20, 96 |
| Conread position: | 161-431 |
| Cow position: | chr5:20555068-20555353 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 67, 28 |
Show alignments to all cow chromosomes.