Cow genome map

Conread name: Ovi2-UMC-peov3-004-f11

Conread position: 1-122
Cow position: chr16:11449568-11449687 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 102
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 35, 0

Conread position: 1-135
Cow position: chr16:4979612-4979740 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 1-146
Cow position: chr16:55047306-55047159 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 1-147
Cow position: chr16:29380053-29380201 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 107, 92

Conread position: 1-157
Cow position: chr16:32385021-32384867 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 134
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 90, 0

Conread position: 1-161
Cow position: chr16:3752373-3752538 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 27, 0

Conread position: 1-163
Cow position: chr16:21095692-21095527 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 40, 77

Conread position: 1-164
Cow position: chr16:4910732-4910565 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 85, 0

Conread position: 1-164
Cow position: chr16:42257251-42257411 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 29, 51

Conread position: 1-164
Cow position: chr16:51784916-51784767 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 1-165
Cow position: chr16:11008141-11008306 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 12

Conread position: 1-165
Cow position: chr16:22786250-22786085 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 91, 0

Conread position: 1-165
Cow position: chr16:23990688-23990520 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 43, 0

Conread position: 1-165
Cow position: chr16:52218888-52219044 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 1-166
Cow position: chr16:3628615-3628775 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 36, 0

Conread position: 1-166
Cow position: chr16:4499237-4499399 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 139
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 16, 0

Conread position: 1-166
Cow position: chr16:4762937-4763095 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 0

Conread position: 1-166
Cow position: chr16:4875797-4875958 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 139
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 35, 0

Conread position: 1-166
Cow position: chr16:7639795-7639954 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 43, 81

Conread position: 1-166
Cow position: chr16:11153390-11153227 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 45, 0

Conread position: 1-166
Cow position: chr16:13601274-13601117 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 1-166
Cow position: chr16:15320671-15320508 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 46, 118

Conread position: 1-166
Cow position: chr16:16545871-16546036 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 43, 67

Conread position: 1-166
Cow position: chr16:17745634-17745797 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 94, 0

Conread position: 1-166
Cow position: chr16:19976767-19976939 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 39, 93

Conread position: 1-166
Cow position: chr16:31419243-31419409 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 136
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 128, 78

Conread position: 1-166
Cow position: chr16:41608407-41608576 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 1-166
Cow position: chr16:53267527-53267687 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 39, 0

Conread position: 1-166
Cow position: chr16:55586801-55586636 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 136
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 60, 65

Conread position: 1-168
Cow position: chr16:26156336-26156171 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 138
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 77, 0

Conread position: 1-169
Cow position: chr16:28816297-28816128 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 142
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 28, 121

Conread position: 1-169
Cow position: chr16:45677053-45676886 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 88, 95

Conread position: 1-169
Cow position: chr16:49579879-49580052 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 27, 93

Conread position: 1-172
Cow position: chr16:13683971-13683791 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 119, 51

Conread position: 1-175
Cow position: chr16:7784938-7785116 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 143
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 45, 0

Conread position: 1-176
Cow position: chr16:37442329-37442150 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 1-177
Cow position: chr16:11105348-11105528 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 43, 99

Conread position: 1-177
Cow position: chr16:56613119-56613295 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 45, 80

Conread position: 1-184
Cow position: chr16:16963607-16963792 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 43, 71

Conread position: 1-184
Cow position: chr16:51399947-51399764 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 129
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 68, 95

Conread position: 1-264
Cow position: chr16:49171611-49171345 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 174, 45

Conread position: 1-277
Cow position: chr16:9845914-9845624 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 271

Conread position: 1-277
Cow position: chr16:28112122-28111823 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 295

Conread position: 2-159
Cow position: chr16:11085579-11085426 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 41, 65

Conread position: 2-166
Cow position: chr16:2308485-2308650 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 133
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 55, 0

Conread position: 2-166
Cow position: chr16:5243763-5243933 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 142
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 38, 0

Conread position: 2-166
Cow position: chr16:12169891-12169727 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 2-166
Cow position: chr16:54515528-54515688 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 89, 29

Conread position: 2-169
Cow position: chr16:18949402-18949577 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 136, 46

Conread position: 3-160
Cow position: chr16:28267215-28267055 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 128
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 51, 115

Conread position: 3-161
Cow position: chr16:17948383-17948224 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 49, 25

Conread position: 3-161
Cow position: chr16:46253892-46253729 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 34, 0

Conread position: 3-163
Cow position: chr16:18051892-18052057 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 131
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 14

Conread position: 3-163
Cow position: chr16:32837745-32837585 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 145, 33

Conread position: 3-165
Cow position: chr16:18426985-18427149 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 135
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 54, 0

Conread position: 3-165
Cow position: chr16:25463574-25463738 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 135
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 80, 0

Conread position: 3-165
Cow position: chr16:34210612-34210446 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 55, 76

Conread position: 3-166
Cow position: chr16:3918331-3918495 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 133
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 14, 31

Conread position: 3-166
Cow position: chr16:30639144-30639299 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 41, 94

Conread position: 3-166
Cow position: chr16:36930519-36930355 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 134, 0

Conread position: 3-172
Cow position: chr16:25287890-25287718 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 41, 114

Conread position: 3-175
Cow position: chr16:27005001-27005175 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 143
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 34, 0

Conread position: 5-166
Cow position: chr16:10303949-10303784 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 6-166
Cow position: chr16:7427059-7426895 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 105, 44

Conread position: 7-165
Cow position: chr16:40732023-40732180 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 140
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 0

Conread position: 7-166
Cow position: chr16:17867669-17867509 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 120
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 16, 0

Conread position: 9-129
Cow position: chr16:12738136-12738262 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 34, 0

Conread position: 9-162
Cow position: chr16:50014331-50014488 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 35, 115

Conread position: 12-161
Cow position: chr16:54425970-54426120 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 33, 0

Conread position: 15-166
Cow position: chr16:16524548-16524395 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 25, 102

Conread position: 16-166
Cow position: chr16:43765119-43765269 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 123

Conread position: 16-166
Cow position: chr16:45692955-45693110 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 26, 0

Conread position: 18-169
Cow position: chr16:56905727-56905577 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 28, 107

Conread position: 18-175
Cow position: chr16:25803589-25803429 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 130
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 28, 106

Conread position: 21-166
Cow position: chr16:20260307-20260454 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 121
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 22, 106

Conread position: 21-169
Cow position: chr16:20685619-20685479 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 21-196
Cow position: chr16:43815732-43815902 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 23, 46

Conread position: 22-192
Cow position: chr16:45139488-45139663 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 22, 101

Conread position: 24-169
Cow position: chr16:5836404-5836544 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 22, 82

Conread position: 26-166
Cow position: chr16:8323157-8323019 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 5, 0

Conread position: 35-158
Cow position: chr16:25043552-25043675 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 36-166
Cow position: chr16:51070091-51069955 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 40-157
Cow position: chr16:6998182-6998299 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 42-165
Cow position: chr16:22872527-22872409 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 42-165
Cow position: chr16:31489921-31490046 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 50-166
Cow position: chr16:52222480-52222364 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 56-275
Cow position: chr16:5333702-5333478 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 109, 79

Conread position: 57-164
Cow position: chr16:51880131-51880024 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 92
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.