Cow genome map

Conread name: Ovi2-UMC-peov3-004-f11

Conread position: 1-114
Cow position: chr17:5360726-5360613 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-121
Cow position: chr17:18173965-18173848 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 103, 0

Conread position: 1-147
Cow position: chr17:1328131-1327985 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 42, 103

Conread position: 1-160
Cow position: chr17:8079154-8079315 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 41, 88

Conread position: 1-160
Cow position: chr17:35311261-35311425 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 117

Conread position: 1-161
Cow position: chr17:144335-144179 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 43, 71

Conread position: 1-161
Cow position: chr17:242476-242637 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 74, 113

Conread position: 1-161
Cow position: chr17:18815069-18815216 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 44, 0

Conread position: 1-161
Cow position: chr17:37342646-37342484 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 43, 94

Conread position: 1-163
Cow position: chr17:18494676-18494514 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 134
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 1-164
Cow position: chr17:8926380-8926213 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 1-164
Cow position: chr17:10271331-10271498 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 134
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 42, 0

Conread position: 1-164
Cow position: chr17:11837262-11837423 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 133
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 52, 45

Conread position: 1-164
Cow position: chr17:34628641-34628477 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 136
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 84, 0

Conread position: 1-164
Cow position: chr17:35990936-35991100 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 134
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 12, 0

Conread position: 1-164
Cow position: chr17:42435792-42435642 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 77, 0

Conread position: 1-165
Cow position: chr17:3466675-3466830 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 1-165
Cow position: chr17:9565149-9565311 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 84, 110

Conread position: 1-165
Cow position: chr17:20216011-20216170 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 142, 35

Conread position: 1-165
Cow position: chr17:30236065-30236212 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 54, 30

Conread position: 1-166
Cow position: chr17:3042319-3042478 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 46, 0

Conread position: 1-166
Cow position: chr17:8279869-8279704 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 138
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 1-166
Cow position: chr17:11171635-11171797 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 43, 65

Conread position: 1-166
Cow position: chr17:11304877-11305035 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 38, 0

Conread position: 1-166
Cow position: chr17:18824630-18824797 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 142
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 107, 0

Conread position: 1-166
Cow position: chr17:19756061-19755896 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 134
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 8, 63

Conread position: 1-166
Cow position: chr17:19891455-19891625 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 145

Conread position: 1-166
Cow position: chr17:21312965-21312806 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 1-166
Cow position: chr17:23879988-23879823 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 138
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 27, 117

Conread position: 1-166
Cow position: chr17:25181309-25181139 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 43, 124

Conread position: 1-166
Cow position: chr17:25707795-25707961 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 136
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 42, 94

Conread position: 1-166
Cow position: chr17:25740790-25740957 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 136
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 36, 0

Conread position: 1-166
Cow position: chr17:25755624-25755797 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 140
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 41, 0

Conread position: 1-166
Cow position: chr17:28359683-28359844 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 139
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 36, 132

Conread position: 1-166
Cow position: chr17:32457740-32457564 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 141
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 28, 0

Conread position: 1-166
Cow position: chr17:37775961-37776122 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 135
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 59, 43

Conread position: 1-166
Cow position: chr17:37778777-37778616 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 135
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 59, 43

Conread position: 1-166
Cow position: chr17:41892228-41892061 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 49, 98

Conread position: 1-166
Cow position: chr17:44232879-44232710 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 42, 112

Conread position: 1-167
Cow position: chr17:20592067-20592236 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 79

Conread position: 1-168
Cow position: chr17:25145468-25145314 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 1-169
Cow position: chr17:27780694-27780860 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 133
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 160, 59

Conread position: 1-169
Cow position: chr17:33999204-33999041 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 92, 0

Conread position: 1-172
Cow position: chr17:3945360-3945189 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 138
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 45, 151

Conread position: 1-172
Cow position: chr17:7890339-7890163 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 108, 0

Conread position: 1-172
Cow position: chr17:28847828-28847656 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 93

Conread position: 1-175
Cow position: chr17:8230458-8230635 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 28, 95

Conread position: 1-175
Cow position: chr17:10459096-10458924 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 1-175
Cow position: chr17:20993199-20993026 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 94, 30

Conread position: 1-175
Cow position: chr17:21260111-21259933 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 45, 0

Conread position: 1-184
Cow position: chr17:38276531-38276709 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 148
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 45, 0

Conread position: 1-188
Cow position: chr17:39012558-39012752 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 38, 121

Conread position: 1-200
Cow position: chr17:26084874-26085076 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 170

Conread position: 1-273
Cow position: chr17:17452763-17452471 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 219
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 163, 130

Conread position: 1-273
Cow position: chr17:20815214-20815494 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 211
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 43, 101

Conread position: 1-273
Cow position: chr17:21419272-21419542 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 167

Conread position: 2-156
Cow position: chr17:36817783-36817936 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 36, 0

Conread position: 2-159
Cow position: chr17:5041835-5041684 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 47, 0

Conread position: 2-160
Cow position: chr17:1526517-1526356 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 125

Conread position: 2-162
Cow position: chr17:9293590-9293752 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 35, 0

Conread position: 2-166
Cow position: chr17:38613087-38613251 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 96, 112

Conread position: 2-169
Cow position: chr17:13672228-13672063 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 138
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 7, 0

Conread position: 2-175
Cow position: chr17:34864413-34864586 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 83, 153

Conread position: 3-165
Cow position: chr17:10634215-10634057 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 123, 0

Conread position: 3-165
Cow position: chr17:25590394-25590231 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 55, 0

Conread position: 3-166
Cow position: chr17:2079602-2079765 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 133
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 62, 112

Conread position: 3-166
Cow position: chr17:8861343-8861178 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 134
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 47, 132

Conread position: 3-166
Cow position: chr17:9117485-9117651 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 97

Conread position: 3-166
Cow position: chr17:23803309-23803463 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 35, 0

Conread position: 3-166
Cow position: chr17:37415058-37414891 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 137
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 41, 0

Conread position: 3-174
Cow position: chr17:30204498-30204668 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 165, 0

Conread position: 3-190
Cow position: chr17:16307222-16307406 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 156
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 4-138
Cow position: chr17:41811660-41811794 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 115
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 40, 86

Conread position: 4-166
Cow position: chr17:18245918-18246082 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 132
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 33, 0

Conread position: 4-175
Cow position: chr17:15450197-15450369 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 36, 147

Conread position: 4-177
Cow position: chr17:5380809-5380986 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 100

Conread position: 6-168
Cow position: chr17:10790157-10790322 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 38, 150

Conread position: 12-153
Cow position: chr17:16463264-16463113 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 32, 0

Conread position: 18-162
Cow position: chr17:27697840-27697702 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 32, 0

Conread position: 18-173
Cow position: chr17:1061206-1061048 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 82

Conread position: 19-169
Cow position: chr17:7595015-7595173 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 25, 49

Conread position: 21-166
Cow position: chr17:1094660-1094511 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 15, 102

Conread position: 22-154
Cow position: chr17:4141017-4140882 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 69, 0

Conread position: 23-175
Cow position: chr17:3270177-3270325 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 74, 0

Conread position: 24-165
Cow position: chr17:35212229-35212370 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 103, 69

Conread position: 40-166
Cow position: chr17:26162547-26162422 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 32, 0

Conread position: 41-135
Cow position: chr17:7861961-7861866 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 48-165
Cow position: chr17:10308142-10308024 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 48-166
Cow position: chr17:10423970-10424083 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 50-172
Cow position: chr17:25340265-25340140 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 82

Conread position: 50-273
Cow position: chr17:20344510-20344743 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 173
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 115, 51

Conread position: 56-166
Cow position: chr17:14683678-14683789 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 5, 0

Conread position: 62-166
Cow position: chr17:5787933-5787831 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 70-166
Cow position: chr17:20608452-20608550 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 86
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 75-166
Cow position: chr17:27257318-27257227 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 78
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 85-175
Cow position: chr17:10016027-10015936 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 78
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 35, 0

Show alignments to all cow chromosomes.