Cow genome map
| Conread name: | Ovi2-UMC-peov3-004-f11 |
| Conread position: | 1-115 |
| Cow position: | chr18:55697249-55697133 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-134 |
| Cow position: | chr18:21203492-21203362 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1-146 |
| Cow position: | chr18:50700433-50700582 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-147 |
| Cow position: | chr18:32860414-32860555 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-157 |
| Cow position: | chr18:22874639-22874796 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 1-160 |
| Cow position: | chr18:38344566-38344730 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 43, 118 |
| Conread position: | 1-160 |
| Cow position: | chr18:42479825-42479663 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 43, 111 |
| Conread position: | 1-161 |
| Cow position: | chr18:329506-329352 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-164 |
| Cow position: | chr18:10101258-10101419 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 1-164 |
| Cow position: | chr18:16726413-16726577 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 55, 120 |
| Conread position: | 1-164 |
| Cow position: | chr18:17334649-17334483 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 142 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-164 |
| Cow position: | chr18:23360396-23360563 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-164 |
| Cow position: | chr18:39185376-39185538 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-164 |
| Cow position: | chr18:56159231-56159390 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 94, 33 |
| Conread position: | 1-165 |
| Cow position: | chr18:19387348-19387506 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 1-165 |
| Cow position: | chr18:33275072-33275237 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 41, 141 |
| Conread position: | 1-166 |
| Cow position: | chr18:2592406-2592237 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 116 |
| Conread position: | 1-166 |
| Cow position: | chr18:4515794-4515958 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 1-166 |
| Cow position: | chr18:19363698-19363866 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 143 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1-166 |
| Cow position: | chr18:21175949-21176118 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-166 |
| Cow position: | chr18:23424696-23424850 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-166 |
| Cow position: | chr18:23808106-23807942 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 90, 61 |
| Conread position: | 1-166 |
| Cow position: | chr18:34021157-34021316 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-166 |
| Cow position: | chr18:34325193-34325022 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-166 |
| Cow position: | chr18:36477962-36478130 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 43, 81 |
| Conread position: | 1-166 |
| Cow position: | chr18:42060846-42061004 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 124, 99 |
| Conread position: | 1-168 |
| Cow position: | chr18:35797391-35797557 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 138 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1-172 |
| Cow position: | chr18:16842299-16842126 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1-172 |
| Cow position: | chr18:17324477-17324653 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-172 |
| Cow position: | chr18:22411850-22411678 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-172 |
| Cow position: | chr18:25984806-25984633 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 39, 115 |
| Conread position: | 1-172 |
| Cow position: | chr18:31562627-31562458 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-176 |
| Cow position: | chr18:22065596-22065412 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 43, 81 |
| Conread position: | 1-196 |
| Cow position: | chr18:4765507-4765318 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 12, 70 |
| Conread position: | 1-196 |
| Cow position: | chr18:21939122-21939323 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 113, 199 |
| Conread position: | 1-275 |
| Cow position: | chr18:5570919-5571197 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 43, 172 |
| Conread position: | 2-162 |
| Cow position: | chr18:43463637-43463481 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 138 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 131, 35 |
| Conread position: | 2-164 |
| Cow position: | chr18:13497839-13497667 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 2-164 |
| Cow position: | chr18:51298249-51298408 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 89, 32 |
| Conread position: | 2-164 |
| Cow position: | chr18:51587777-51587615 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 85 |
| Conread position: | 2-165 |
| Cow position: | chr18:32773646-32773806 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 42, 61 |
| Conread position: | 2-165 |
| Cow position: | chr18:51537892-51537732 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 26, 30 |
| Conread position: | 2-166 |
| Cow position: | chr18:21574760-21574925 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 2-166 |
| Cow position: | chr18:23652847-23652692 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 2-166 |
| Cow position: | chr18:26535749-26535580 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 2-169 |
| Cow position: | chr18:19486882-19487047 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 2-169 |
| Cow position: | chr18:25003108-25002946 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 2-175 |
| Cow position: | chr18:33157589-33157757 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 83, 58 |
| Conread position: | 2-221 |
| Cow position: | chr18:4039946-4040167 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 3-166 |
| Cow position: | chr18:26335047-26334882 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 40, 114 |
| Conread position: | 3-166 |
| Cow position: | chr18:50566638-50566803 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 41, 63 |
| Conread position: | 3-175 |
| Cow position: | chr18:28085341-28085512 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 108, 15 |
| Conread position: | 3-273 |
| Cow position: | chr18:51412148-51412424 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 167, 36 |
| Conread position: | 4-166 |
| Cow position: | chr18:23715119-23714956 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 40, 56 |
| Conread position: | 5-197 |
| Cow position: | chr18:29796653-29796463 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 6-165 |
| Cow position: | chr18:6157694-6157844 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 7-165 |
| Cow position: | chr18:36123306-36123469 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 33, 76 |
| Conread position: | 15-147 |
| Cow position: | chr18:50927516-50927649 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 70, 125 |
| Conread position: | 16-164 |
| Cow position: | chr18:41072783-41072932 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 28, 112 |
| Conread position: | 16-277 |
| Cow position: | chr18:35766970-35767253 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 86 |
| Conread position: | 22-161 |
| Cow position: | chr18:306276-306140 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 83 |
| Conread position: | 33-165 |
| Cow position: | chr18:51500275-51500147 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 37-172 |
| Cow position: | chr18:21930533-21930398 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 79, 21 |
| Conread position: | 38-166 |
| Cow position: | chr18:35749173-35749050 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 76, 94 |
| Conread position: | 49-175 |
| Cow position: | chr18:32517546-32517416 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 61-166 |
| Cow position: | chr18:23487852-23487957 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 62-191 |
| Cow position: | chr18:37745632-37745765 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 27, 129 |
| Conread position: | 73-166 |
| Cow position: | chr18:24364208-24364115 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 80 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 86-275 |
| Cow position: | chr18:13497489-13497290 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
Show alignments to all cow chromosomes.