Cow genome map
| Conread name: | Ovi2-UMC-peov3-004-f11 |
| Conread position: | 1-114 |
| Cow position: | chr19:50657442-50657562 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-130 |
| Cow position: | chr19:33281158-33281282 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-159 |
| Cow position: | chr19:25637712-25637551 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 43, 117 |
| Conread position: | 1-159 |
| Cow position: | chr19:39986754-39986599 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 1-160 |
| Cow position: | chr19:10171789-10171949 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 111, 89 |
| Conread position: | 1-162 |
| Cow position: | chr19:54225510-54225359 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-163 |
| Cow position: | chr19:2342265-2342431 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1-163 |
| Cow position: | chr19:31826897-31827047 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-164 |
| Cow position: | chr19:25711542-25711367 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-164 |
| Cow position: | chr19:32214595-32214749 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-165 |
| Cow position: | chr19:1713355-1713192 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 136 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 1-165 |
| Cow position: | chr19:9387422-9387587 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 1-165 |
| Cow position: | chr19:18242633-18242476 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-165 |
| Cow position: | chr19:24137046-24137213 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 43, 115 |
| Conread position: | 1-165 |
| Cow position: | chr19:44489880-44490047 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 143 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 39, 6 |
| Conread position: | 1-166 |
| Cow position: | chr19:904775-904930 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-166 |
| Cow position: | chr19:7029703-7029869 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 88, 140 |
| Conread position: | 1-166 |
| Cow position: | chr19:19673206-19673366 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 143 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-166 |
| Cow position: | chr19:19924816-19924647 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-166 |
| Cow position: | chr19:21285297-21285122 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-166 |
| Cow position: | chr19:24689071-24689231 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 36, 55 |
| Conread position: | 1-166 |
| Cow position: | chr19:28921611-28921776 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 140 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-166 |
| Cow position: | chr19:31381209-31381042 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 143 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 43, 134 |
| Conread position: | 1-166 |
| Cow position: | chr19:33306092-33306261 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-166 |
| Cow position: | chr19:35782345-35782179 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 143 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 45, 99 |
| Conread position: | 1-166 |
| Cow position: | chr19:43726933-43727090 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-166 |
| Cow position: | chr19:43733551-43733696 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-166 |
| Cow position: | chr19:44366815-44366972 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-166 |
| Cow position: | chr19:48409303-48409463 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-166 |
| Cow position: | chr19:49358445-49358291 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 134, 16 |
| Conread position: | 1-166 |
| Cow position: | chr19:53738123-53738288 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 141 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-166 |
| Cow position: | chr19:56018738-56018572 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 39, 124 |
| Conread position: | 1-169 |
| Cow position: | chr19:18788316-18788148 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 141 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-169 |
| Cow position: | chr19:20310842-20310677 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 111, 77 |
| Conread position: | 1-169 |
| Cow position: | chr19:30052212-30052052 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-169 |
| Cow position: | chr19:48722813-48722985 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 43, 116 |
| Conread position: | 1-172 |
| Cow position: | chr19:22863874-22863703 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 43, 149 |
| Conread position: | 1-172 |
| Cow position: | chr19:32989605-32989441 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 1-172 |
| Cow position: | chr19:36478684-36478853 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 39, 93 |
| Conread position: | 1-175 |
| Cow position: | chr19:21335828-21335645 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-175 |
| Cow position: | chr19:56156041-56156217 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 42, 87 |
| Conread position: | 1-273 |
| Cow position: | chr19:42215899-42216171 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 104, 21 |
| Conread position: | 2-162 |
| Cow position: | chr19:9704041-9703888 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-166 |
| Cow position: | chr19:5648862-5648703 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 157, 69 |
| Conread position: | 2-166 |
| Cow position: | chr19:6881090-6880922 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 26, 74 |
| Conread position: | 2-169 |
| Cow position: | chr19:43517025-43517188 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 139 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 2-177 |
| Cow position: | chr19:36380034-36380207 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-165 |
| Cow position: | chr19:35064396-35064238 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 136, 35 |
| Conread position: | 3-166 |
| Cow position: | chr19:2821368-2821534 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 41, 115 |
| Conread position: | 3-166 |
| Cow position: | chr19:19661832-19661998 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 39, 96 |
| Conread position: | 3-175 |
| Cow position: | chr19:47479835-47479656 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 25, 136 |
| Conread position: | 3-188 |
| Cow position: | chr19:41212262-41212076 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 149 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 4-165 |
| Cow position: | chr19:48478765-48478930 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 4-172 |
| Cow position: | chr19:36977125-36976955 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 143 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 5-118 |
| Cow position: | chr19:11147730-11147614 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 6-166 |
| Cow position: | chr19:682262-682098 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 82, 28 |
| Conread position: | 6-166 |
| Cow position: | chr19:55236286-55236441 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 7-176 |
| Cow position: | chr19:2771224-2771049 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 11-166 |
| Cow position: | chr19:15936635-15936789 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 20, 112 |
| Conread position: | 14-189 |
| Cow position: | chr19:39876717-39876548 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 32 |
| Conread position: | 16-119 |
| Cow position: | chr19:38812970-38813074 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 18-166 |
| Cow position: | chr19:20693302-20693449 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 18-175 |
| Cow position: | chr19:16694240-16694079 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 98 |
| Conread position: | 19-157 |
| Cow position: | chr19:15796474-15796609 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 21-157 |
| Cow position: | chr19:471842-471977 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 68 |
| Conread position: | 21-178 |
| Cow position: | chr19:22168322-22168483 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 22-112 |
| Cow position: | chr19:12474289-12474199 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 77 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-166 |
| Cow position: | chr19:7839235-7839091 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 36, 104 |
| Conread position: | 24-166 |
| Cow position: | chr19:20661605-20661459 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 20, 92 |
| Conread position: | 27-172 |
| Cow position: | chr19:13129689-13129832 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 17 |
| Conread position: | 29-164 |
| Cow position: | chr19:33260844-33260981 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 91, 117 |
| Conread position: | 36-169 |
| Cow position: | chr19:22668057-22668189 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 36-172 |
| Cow position: | chr19:25271593-25271456 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 38-165 |
| Cow position: | chr19:51536392-51536519 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 53, 82 |
| Conread position: | 39-165 |
| Cow position: | chr19:1402981-1402857 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 104, 23 |
| Conread position: | 50-161 |
| Cow position: | chr19:56126095-56126206 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-166 |
| Cow position: | chr19:5279704-5279821 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
Show alignments to all cow chromosomes.