Cow genome map
| Conread name: | Ovi2-UMC-peov3-004-f11 |
| Conread position: | 1-126 |
| Cow position: | chr21:32191323-32191453 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-156 |
| Cow position: | chr21:24714515-24714674 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1-160 |
| Cow position: | chr21:33210061-33210223 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 89 |
| Conread position: | 1-160 |
| Cow position: | chr21:47823409-47823255 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 1-163 |
| Cow position: | chr21:4098738-4098894 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-163 |
| Cow position: | chr21:8289778-8289613 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 43, 162 |
| Conread position: | 1-164 |
| Cow position: | chr21:28734049-28733889 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1-165 |
| Cow position: | chr21:41583132-41583298 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-166 |
| Cow position: | chr21:912104-911940 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1-166 |
| Cow position: | chr21:5425842-5426000 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-166 |
| Cow position: | chr21:7156617-7156788 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 42, 130 |
| Conread position: | 1-166 |
| Cow position: | chr21:9353303-9353471 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 42, 96 |
| Conread position: | 1-166 |
| Cow position: | chr21:23478857-23478690 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 140 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-166 |
| Cow position: | chr21:24865019-24865185 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 43, 89 |
| Conread position: | 1-166 |
| Cow position: | chr21:28993763-28993594 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 53, 111 |
| Conread position: | 1-166 |
| Cow position: | chr21:28998043-28997873 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-166 |
| Cow position: | chr21:30150403-30150239 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 88, 123 |
| Conread position: | 1-166 |
| Cow position: | chr21:32339874-32339710 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 94, 36 |
| Conread position: | 1-166 |
| Cow position: | chr21:44754914-44754752 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 1-166 |
| Cow position: | chr21:49662254-49662097 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-169 |
| Cow position: | chr21:12973390-12973216 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 146 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-169 |
| Cow position: | chr21:20426395-20426557 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 117, 42 |
| Conread position: | 1-169 |
| Cow position: | chr21:23499960-23499798 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-169 |
| Cow position: | chr21:28512395-28512557 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1-170 |
| Cow position: | chr21:33947385-33947221 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-172 |
| Cow position: | chr21:12087454-12087623 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 47, 121 |
| Conread position: | 1-172 |
| Cow position: | chr21:29484846-29485012 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 88, 43 |
| Conread position: | 1-172 |
| Cow position: | chr21:42053402-42053233 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 143 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 90, 61 |
| Conread position: | 1-273 |
| Cow position: | chr21:44093643-44093939 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 47, 25 |
| Conread position: | 2-164 |
| Cow position: | chr21:35997037-35997199 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 139 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-165 |
| Cow position: | chr21:25286374-25286540 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 3-166 |
| Cow position: | chr21:12462106-12461943 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 28, 110 |
| Conread position: | 3-166 |
| Cow position: | chr21:20160548-20160705 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 3-166 |
| Cow position: | chr21:35061953-35062111 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 41, 97 |
| Conread position: | 3-166 |
| Cow position: | chr21:36819352-36819185 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 3-166 |
| Cow position: | chr21:43357399-43357232 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 45, 93 |
| Conread position: | 3-169 |
| Cow position: | chr21:11521185-11521019 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 3-175 |
| Cow position: | chr21:29942871-29943039 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 165, 83 |
| Conread position: | 3-176 |
| Cow position: | chr21:23785894-23786067 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-171 |
| Cow position: | chr21:23449440-23449608 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 38, 62 |
| Conread position: | 4-176 |
| Cow position: | chr21:6058774-6058604 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 40, 118 |
| Conread position: | 6-158 |
| Cow position: | chr21:28944496-28944346 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 134 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 6-175 |
| Cow position: | chr21:20575596-20575439 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 6-277 |
| Cow position: | chr21:8187646-8187353 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 76 |
| Conread position: | 7-158 |
| Cow position: | chr21:40312933-40312781 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 37, 121 |
| Conread position: | 7-169 |
| Cow position: | chr21:5597015-5597180 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 93 |
| Conread position: | 8-147 |
| Cow position: | chr21:8932016-8931881 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 10-158 |
| Cow position: | chr21:34565341-34565193 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 11-166 |
| Cow position: | chr21:6316078-6316242 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 11-166 |
| Cow position: | chr21:45923775-45923619 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 33, 84 |
| Conread position: | 13-173 |
| Cow position: | chr21:37941808-37941653 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 16-166 |
| Cow position: | chr21:6621446-6621293 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 109 |
| Conread position: | 17-275 |
| Cow position: | chr21:18782144-18782411 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 96, 19 |
| Conread position: | 18-163 |
| Cow position: | chr21:41595590-41595739 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 18-166 |
| Cow position: | chr21:2412640-2412789 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 39, 77 |
| Conread position: | 38-189 |
| Cow position: | chr21:31200073-31200224 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 81, 131 |
| Conread position: | 40-175 |
| Cow position: | chr21:41514706-41514841 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 113, 51 |
| Conread position: | 50-175 |
| Cow position: | chr21:21140439-21140559 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 36, 0 |
Show alignments to all cow chromosomes.