Cow genome map
| Conread name: | Ovi2-UMC-peov3-004-f11 |
| Conread position: | 1-146 |
| Cow position: | chr24:28349360-28349499 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-157 |
| Cow position: | chr24:39500507-39500348 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-158 |
| Cow position: | chr24:28724214-28724365 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1-160 |
| Cow position: | chr24:2970832-2970673 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 27, 113 |
| Conread position: | 1-161 |
| Cow position: | chr24:19466159-19465987 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-161 |
| Cow position: | chr24:27341249-27341087 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 1-161 |
| Cow position: | chr24:39123643-39123797 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-162 |
| Cow position: | chr24:39350432-39350283 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1-164 |
| Cow position: | chr24:37205104-37204941 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 142 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-165 |
| Cow position: | chr24:25677809-25677976 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 1-165 |
| Cow position: | chr24:32158497-32158337 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-165 |
| Cow position: | chr24:40129897-40130065 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-166 |
| Cow position: | chr24:12992830-12992996 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 103 |
| Conread position: | 1-166 |
| Cow position: | chr24:14337509-14337670 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 1-166 |
| Cow position: | chr24:18390514-18390349 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 90, 113 |
| Conread position: | 1-166 |
| Cow position: | chr24:20862182-20862018 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 140 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 119, 47 |
| Conread position: | 1-166 |
| Cow position: | chr24:23685286-23685131 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-166 |
| Cow position: | chr24:24311275-24311444 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-166 |
| Cow position: | chr24:27052720-27052555 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 112, 71 |
| Conread position: | 1-166 |
| Cow position: | chr24:27633188-27633346 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1-166 |
| Cow position: | chr24:27683667-27683506 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 1-166 |
| Cow position: | chr24:28028931-28028768 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 91 |
| Conread position: | 1-166 |
| Cow position: | chr24:30860411-30860576 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 137 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-166 |
| Cow position: | chr24:32758989-32758820 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-166 |
| Cow position: | chr24:40091797-40091635 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-169 |
| Cow position: | chr24:6341945-6342125 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1-169 |
| Cow position: | chr24:25229283-25229115 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-169 |
| Cow position: | chr24:35529698-35529863 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 158, 90 |
| Conread position: | 1-172 |
| Cow position: | chr24:6061624-6061453 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 88, 156 |
| Conread position: | 1-172 |
| Cow position: | chr24:41333101-41332931 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 142, 35 |
| Conread position: | 1-198 |
| Cow position: | chr24:27719978-27719784 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 167, 22 |
| Conread position: | 1-249 |
| Cow position: | chr24:22305329-22305574 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 165, 43 |
| Conread position: | 1-273 |
| Cow position: | chr24:1272094-1271801 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 43, 207 |
| Conread position: | 1-273 |
| Cow position: | chr24:28279416-28279713 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-163 |
| Cow position: | chr24:40346734-40346573 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 110, 44 |
| Conread position: | 2-165 |
| Cow position: | chr24:7079562-7079729 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 129 |
| Conread position: | 2-166 |
| Cow position: | chr24:38266969-38267129 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 125, 44 |
| Conread position: | 2-191 |
| Cow position: | chr24:43448819-43448642 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 29, 58 |
| Conread position: | 3-143 |
| Cow position: | chr24:42816773-42816913 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 135, 10 |
| Conread position: | 3-160 |
| Cow position: | chr24:14746412-14746567 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 67, 53 |
| Conread position: | 3-166 |
| Cow position: | chr24:6507987-6507830 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 140 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 3-166 |
| Cow position: | chr24:29389023-29389180 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 3-166 |
| Cow position: | chr24:39258942-39259097 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 3-166 |
| Cow position: | chr24:43733746-43733910 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 138 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 3-173 |
| Cow position: | chr24:30900451-30900282 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 5-163 |
| Cow position: | chr24:13297935-13297781 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 5-166 |
| Cow position: | chr24:39681634-39681793 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 112, 73 |
| Conread position: | 6-166 |
| Cow position: | chr24:31378535-31378695 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 23, 130 |
| Conread position: | 7-120 |
| Cow position: | chr24:30427919-30428035 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 9-172 |
| Cow position: | chr24:29041818-29041977 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 28, 128 |
| Conread position: | 10-166 |
| Cow position: | chr24:35568971-35569123 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 32, 60 |
| Conread position: | 12-166 |
| Cow position: | chr24:14617442-14617594 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 15-160 |
| Cow position: | chr24:18787130-18786986 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 17-173 |
| Cow position: | chr24:28062739-28062897 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 27, 83 |
| Conread position: | 20-161 |
| Cow position: | chr24:18243674-18243533 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 42 |
| Conread position: | 21-166 |
| Cow position: | chr24:7401424-7401280 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 25, 59 |
| Conread position: | 21-174 |
| Cow position: | chr24:3631308-3631454 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 21-175 |
| Cow position: | chr24:15707648-15707492 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 87, 72 |
| Conread position: | 24-161 |
| Cow position: | chr24:29708006-29707863 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 29-273 |
| Cow position: | chr24:30940639-30940387 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 126, 149 |
| Conread position: | 31-166 |
| Cow position: | chr24:27054211-27054347 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 94 |
| Conread position: | 34-184 |
| Cow position: | chr24:29691487-29691333 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 49-163 |
| Cow position: | chr24:40855014-40855128 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-172 |
| Cow position: | chr24:14103411-14103533 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 50-171 |
| Cow position: | chr24:19611834-19611954 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 51-162 |
| Cow position: | chr24:31258513-31258401 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 53-164 |
| Cow position: | chr24:10837573-10837684 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 63-166 |
| Cow position: | chr24:11201810-11201705 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 64-166 |
| Cow position: | chr24:26455677-26455779 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.