Cow genome map
| Conread name: | Ovi2-UMC-peov3-004-f11 |
| Conread position: | 1-120 |
| Cow position: | chr27:8230952-8230838 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-158 |
| Cow position: | chr27:13005992-13005841 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-160 |
| Cow position: | chr27:9169487-9169646 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 90, 112 |
| Conread position: | 1-164 |
| Cow position: | chr27:6620303-6620140 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 41, 73 |
| Conread position: | 1-164 |
| Cow position: | chr27:30702924-30703080 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-165 |
| Cow position: | chr27:8430281-8430444 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 1-165 |
| Cow position: | chr27:17472970-17472803 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1-165 |
| Cow position: | chr27:26935762-26935914 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1-166 |
| Cow position: | chr27:491045-490890 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1-166 |
| Cow position: | chr27:4664627-4664474 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-166 |
| Cow position: | chr27:12231751-12231917 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 50, 111 |
| Conread position: | 1-166 |
| Cow position: | chr27:14937271-14937434 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 134, 45 |
| Conread position: | 1-166 |
| Cow position: | chr27:19637800-19637636 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 45, 115 |
| Conread position: | 1-166 |
| Cow position: | chr27:21138980-21138815 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 61 |
| Conread position: | 1-166 |
| Cow position: | chr27:23659183-23659343 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-166 |
| Cow position: | chr27:25471297-25471134 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 96 |
| Conread position: | 1-169 |
| Cow position: | chr27:23483380-23483217 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-169 |
| Cow position: | chr27:25676384-25676216 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 45, 128 |
| Conread position: | 1-169 |
| Cow position: | chr27:26440899-26441071 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-169 |
| Cow position: | chr27:29019591-29019762 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 43, 89 |
| Conread position: | 1-172 |
| Cow position: | chr27:23600422-23600254 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 90, 56 |
| Conread position: | 1-172 |
| Cow position: | chr27:30561070-30560901 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-175 |
| Cow position: | chr27:6160139-6159966 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 1-175 |
| Cow position: | chr27:20592141-20591966 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 107, 92 |
| Conread position: | 1-175 |
| Cow position: | chr27:26299996-26299822 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 1-176 |
| Cow position: | chr27:26492543-26492719 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 43, 81 |
| Conread position: | 2-157 |
| Cow position: | chr27:26427972-26428131 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 38, 115 |
| Conread position: | 2-160 |
| Cow position: | chr27:30354187-30354344 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 2-166 |
| Cow position: | chr27:8048580-8048749 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 42, 123 |
| Conread position: | 2-172 |
| Cow position: | chr27:6454371-6454198 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 42, 95 |
| Conread position: | 2-277 |
| Cow position: | chr27:6037279-6037010 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 110, 58 |
| Conread position: | 3-159 |
| Cow position: | chr27:23891093-23890939 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 45 |
| Conread position: | 3-166 |
| Cow position: | chr27:16580778-16580614 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-166 |
| Cow position: | chr27:25998860-25998697 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 91 |
| Conread position: | 4-178 |
| Cow position: | chr27:15319606-15319432 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 87 |
| Conread position: | 4-273 |
| Cow position: | chr27:20510342-20510059 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 150, 35 |
| Conread position: | 5-164 |
| Cow position: | chr27:6038745-6038591 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 7-165 |
| Cow position: | chr27:19601528-19601374 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 7-169 |
| Cow position: | chr27:10086530-10086693 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 37, 74 |
| Conread position: | 7-175 |
| Cow position: | chr27:465113-464941 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 7-275 |
| Cow position: | chr27:30677061-30676801 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 213, 160 |
| Conread position: | 9-133 |
| Cow position: | chr27:31372138-31372266 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 9-171 |
| Cow position: | chr27:1141877-1142041 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 99 |
| Conread position: | 15-134 |
| Cow position: | chr27:21041746-21041623 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 16-273 |
| Cow position: | chr27:18948448-18948697 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 28, 163 |
| Conread position: | 18-134 |
| Cow position: | chr27:16493712-16493598 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 98 |
| Conread position: | 18-174 |
| Cow position: | chr27:1498457-1498301 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 151, 94 |
| Conread position: | 20-166 |
| Cow position: | chr27:12424788-12424924 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 31-165 |
| Cow position: | chr27:22330541-22330677 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 31-195 |
| Cow position: | chr27:14874766-14874601 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 33-276 |
| Cow position: | chr27:11600878-11601123 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 140, 91 |
| Conread position: | 34-166 |
| Cow position: | chr27:11416573-11416441 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 50-273 |
| Cow position: | chr27:9691944-9692173 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 120, 85 |
| Conread position: | 63-175 |
| Cow position: | chr27:1953015-1953128 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 65-275 |
| Cow position: | chr27:3269558-3269333 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 98, 49 |
Show alignments to all cow chromosomes.