Cow genome map
| Conread name: | Ovi2-UMC-peov3-004-f11 |
| Conread position: | 1-114 |
| Cow position: | chr28:10514287-10514174 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-123 |
| Cow position: | chr28:6993680-6993807 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-124 |
| Cow position: | chr28:25334825-25334951 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 43, 117 |
| Conread position: | 1-147 |
| Cow position: | chr28:2340336-2340485 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 81 |
| Conread position: | 1-155 |
| Cow position: | chr28:9822169-9822019 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 116, 45 |
| Conread position: | 1-157 |
| Cow position: | chr28:2905385-2905535 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1-161 |
| Cow position: | chr28:32300555-32300396 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1-163 |
| Cow position: | chr28:15082121-15081958 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-163 |
| Cow position: | chr28:21873577-21873736 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1-164 |
| Cow position: | chr28:2898800-2898965 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 82, 77 |
| Conread position: | 1-164 |
| Cow position: | chr28:15272456-15272295 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1-165 |
| Cow position: | chr28:13267586-13267754 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 116 |
| Conread position: | 1-165 |
| Cow position: | chr28:25563881-25564049 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 43, 99 |
| Conread position: | 1-166 |
| Cow position: | chr28:7607032-7607201 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-166 |
| Cow position: | chr28:9176949-9176786 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 40, 63 |
| Conread position: | 1-166 |
| Cow position: | chr28:9851435-9851586 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-166 |
| Cow position: | chr28:14508561-14508402 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 138, 61 |
| Conread position: | 1-166 |
| Cow position: | chr28:16204528-16204358 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 45, 115 |
| Conread position: | 1-166 |
| Cow position: | chr28:16686837-16686992 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-166 |
| Cow position: | chr28:23231263-23231096 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-166 |
| Cow position: | chr28:23621352-23621513 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 1-166 |
| Cow position: | chr28:29392807-29392980 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 41, 153 |
| Conread position: | 1-166 |
| Cow position: | chr28:30978086-30978242 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-172 |
| Cow position: | chr28:3914514-3914686 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 65, 83 |
| Conread position: | 1-172 |
| Cow position: | chr28:14649153-14649323 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 94, 85 |
| Conread position: | 1-172 |
| Cow position: | chr28:26719164-26719325 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-172 |
| Cow position: | chr28:30995082-30995253 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 1-173 |
| Cow position: | chr28:2738007-2737831 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 99 |
| Conread position: | 1-175 |
| Cow position: | chr28:7549258-7549082 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 43, 81 |
| Conread position: | 1-175 |
| Cow position: | chr28:19222793-19222619 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 93, 113 |
| Conread position: | 1-184 |
| Cow position: | chr28:29455852-29455669 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 148 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 163, 112 |
| Conread position: | 1-260 |
| Cow position: | chr28:28414473-28414744 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 43, 204 |
| Conread position: | 1-273 |
| Cow position: | chr28:34150726-34150434 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 222 |
| Conread position: | 2-160 |
| Cow position: | chr28:21940001-21940160 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 42, 125 |
| Conread position: | 2-192 |
| Cow position: | chr28:2090970-2091166 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 35, 191 |
| Conread position: | 2-273 |
| Cow position: | chr28:17625331-17625055 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 40, 166 |
| Conread position: | 2-277 |
| Cow position: | chr28:31971946-31971664 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 131, 32 |
| Conread position: | 3-162 |
| Cow position: | chr28:10642211-10642053 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 141 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 3-166 |
| Cow position: | chr28:11006983-11007164 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 3-166 |
| Cow position: | chr28:11501085-11500918 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 3-166 |
| Cow position: | chr28:12942187-12942347 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 140, 26 |
| Conread position: | 3-166 |
| Cow position: | chr28:18462806-18462643 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 34, 101 |
| Conread position: | 3-166 |
| Cow position: | chr28:29073948-29073784 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 3-172 |
| Cow position: | chr28:34208509-34208681 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 41, 66 |
| Conread position: | 3-177 |
| Cow position: | chr28:9285571-9285395 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 97 |
| Conread position: | 3-273 |
| Cow position: | chr28:28590545-28590825 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 162, 125 |
| Conread position: | 6-154 |
| Cow position: | chr28:31871939-31871789 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 40, 69 |
| Conread position: | 6-161 |
| Cow position: | chr28:14493350-14493505 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 105, 38 |
| Conread position: | 6-161 |
| Cow position: | chr28:19564015-19563858 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 74 |
| Conread position: | 7-146 |
| Cow position: | chr28:10035211-10035348 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 15-165 |
| Cow position: | chr28:13693565-13693719 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 18-166 |
| Cow position: | chr28:2814678-2814539 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 18-166 |
| Cow position: | chr28:21570011-21570156 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 39-166 |
| Cow position: | chr28:26901228-26901102 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 41-157 |
| Cow position: | chr28:4763722-4763835 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 42-166 |
| Cow position: | chr28:33285267-33285145 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 74, 48 |
| Conread position: | 43-165 |
| Cow position: | chr28:15577414-15577292 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 92-163 |
| Cow position: | chr28:25507123-25507194 (view UCSC Genome Browser custom track) |
| Alignm length: | 72 |
| Alignm identity: | 68 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.