Cow genome map
| Conread name: | Ovi2-UMC-peov3-004-f11 |
| Conread position: | 1-152 |
| Cow position: | chr29:1612781-1612627 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 43, 89 |
| Conread position: | 1-157 |
| Cow position: | chr29:650072-650232 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-161 |
| Cow position: | chr29:87224-87059 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 117 |
| Conread position: | 1-161 |
| Cow position: | chr29:13634503-13634344 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 1-161 |
| Cow position: | chr29:34736668-34736511 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-164 |
| Cow position: | chr29:13553930-13554095 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 145 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-165 |
| Cow position: | chr29:603513-603360 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-165 |
| Cow position: | chr29:26129296-26129461 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 42, 12 |
| Conread position: | 1-166 |
| Cow position: | chr29:356124-356281 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1-166 |
| Cow position: | chr29:709325-709158 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-166 |
| Cow position: | chr29:4367518-4367684 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-166 |
| Cow position: | chr29:10187857-10188016 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 45, 17 |
| Conread position: | 1-166 |
| Cow position: | chr29:11787591-11787758 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 41, 8 |
| Conread position: | 1-166 |
| Cow position: | chr29:11915614-11915782 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 42, 126 |
| Conread position: | 1-166 |
| Cow position: | chr29:12451169-12451339 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 1-166 |
| Cow position: | chr29:12901315-12901144 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-166 |
| Cow position: | chr29:18072727-18072896 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 143 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 45, 156 |
| Conread position: | 1-166 |
| Cow position: | chr29:18338748-18338579 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-166 |
| Cow position: | chr29:18695055-18695211 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-166 |
| Cow position: | chr29:18963537-18963692 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 82 |
| Conread position: | 1-166 |
| Cow position: | chr29:22175488-22175649 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 56 |
| Conread position: | 1-166 |
| Cow position: | chr29:22778384-22778215 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 43, 109 |
| Conread position: | 1-169 |
| Cow position: | chr29:21000439-21000608 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 10 |
| Conread position: | 1-169 |
| Cow position: | chr29:36404619-36404787 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-172 |
| Cow position: | chr29:3395908-3396075 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 167, 45 |
| Conread position: | 1-172 |
| Cow position: | chr29:7408091-7407920 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 41, 117 |
| Conread position: | 1-178 |
| Cow position: | chr29:4065884-4066061 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 88, 95 |
| Conread position: | 1-178 |
| Cow position: | chr29:24103751-24103571 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 99 |
| Conread position: | 1-193 |
| Cow position: | chr29:39567485-39567676 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 90, 77 |
| Conread position: | 1-269 |
| Cow position: | chr29:37719708-37719992 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 88, 73 |
| Conread position: | 1-275 |
| Cow position: | chr29:5964615-5964338 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 23 |
| Conread position: | 2-135 |
| Cow position: | chr29:29302857-29302720 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 2-161 |
| Cow position: | chr29:10475210-10475368 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 28, 117 |
| Conread position: | 2-166 |
| Cow position: | chr29:19508758-19508914 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 2-166 |
| Cow position: | chr29:37961179-37961017 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 2-172 |
| Cow position: | chr29:34609925-34609752 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 42, 135 |
| Conread position: | 3-160 |
| Cow position: | chr29:19907155-19907311 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 39, 110 |
| Conread position: | 3-165 |
| Cow position: | chr29:21534880-21534715 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 41, 81 |
| Conread position: | 3-165 |
| Cow position: | chr29:23743240-23743093 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 3-166 |
| Cow position: | chr29:4520135-4520297 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 3-166 |
| Cow position: | chr29:10153990-10153826 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 3-166 |
| Cow position: | chr29:19254023-19253858 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 109, 90 |
| Conread position: | 3-169 |
| Cow position: | chr29:32644723-32644887 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 3-175 |
| Cow position: | chr29:42268491-42268666 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 41, 113 |
| Conread position: | 4-166 |
| Cow position: | chr29:41006359-41006534 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 129 |
| Conread position: | 5-172 |
| Cow position: | chr29:21925011-21925178 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 138 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-166 |
| Cow position: | chr29:11071902-11071736 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 7-165 |
| Cow position: | chr29:44135660-44135499 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 37, 88 |
| Conread position: | 12-157 |
| Cow position: | chr29:35442652-35442508 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 12-161 |
| Cow position: | chr29:30812559-30812705 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 107, 78 |
| Conread position: | 14-173 |
| Cow position: | chr29:7392905-7393069 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 20-165 |
| Cow position: | chr29:38992996-38992856 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 95, 22 |
| Conread position: | 26-166 |
| Cow position: | chr29:16055316-16055168 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 40-169 |
| Cow position: | chr29:28993341-28993473 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 63-166 |
| Cow position: | chr29:6771992-6772094 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 84 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.