Cow genome map

Conread name: Ovi2-UMC-peov3-004-f11

Conread position: 1-118
Cow position: chr4:24187826-24187705 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 1-126
Cow position: chr4:61304632-61304503 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 1-134
Cow position: chr4:5797764-5797897 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 1-136
Cow position: chr4:35930221-35930358 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 1-145
Cow position: chr4:27529905-27530052 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 43, 100

Conread position: 1-149
Cow position: chr4:15283155-15283306 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 43, 108

Conread position: 1-155
Cow position: chr4:30131150-30131291 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 1-156
Cow position: chr4:18576984-18576828 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 45, 80

Conread position: 1-160
Cow position: chr4:9912519-9912679 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 7, 104

Conread position: 1-160
Cow position: chr4:18489598-18489435 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 34, 0

Conread position: 1-160
Cow position: chr4:41301199-41301040 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 82, 112

Conread position: 1-160
Cow position: chr4:52748666-52748508 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 88, 95

Conread position: 1-160
Cow position: chr4:61171695-61171855 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 39, 116

Conread position: 1-161
Cow position: chr4:8650032-8650185 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 87

Conread position: 1-161
Cow position: chr4:15904890-15905049 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 114
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 1-161
Cow position: chr4:58856946-58856783 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 16

Conread position: 1-162
Cow position: chr4:19307047-19307212 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 138
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 39, 0

Conread position: 1-163
Cow position: chr4:46861800-46861643 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 132
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 118, 34

Conread position: 1-164
Cow position: chr4:23382014-23381856 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 90, 131

Conread position: 1-164
Cow position: chr4:26541526-26541694 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 145
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 43, 0

Conread position: 1-165
Cow position: chr4:19316208-19316047 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 1-165
Cow position: chr4:23509380-23509548 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 43, 116

Conread position: 1-165
Cow position: chr4:45114814-45114650 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-166
Cow position: chr4:2121604-2121441 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 34, 113

Conread position: 1-166
Cow position: chr4:9845713-9845874 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 138
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 160, 41

Conread position: 1-166
Cow position: chr4:10992411-10992242 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 144
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 43, 112

Conread position: 1-166
Cow position: chr4:21073358-21073196 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 37, 0

Conread position: 1-166
Cow position: chr4:21365197-21365362 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-166
Cow position: chr4:23445261-23445093 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 107, 0

Conread position: 1-166
Cow position: chr4:25879187-25879354 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 111, 82

Conread position: 1-166
Cow position: chr4:27997477-27997639 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 33, 17

Conread position: 1-166
Cow position: chr4:28377858-28377705 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 132
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 61, 0

Conread position: 1-166
Cow position: chr4:29291314-29291475 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 15, 0

Conread position: 1-166
Cow position: chr4:31172462-31172631 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 146
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 1-166
Cow position: chr4:36945400-36945240 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 1-166
Cow position: chr4:38181474-38181635 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 99, 0

Conread position: 1-166
Cow position: chr4:47773841-47773686 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 131
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 136, 38

Conread position: 1-166
Cow position: chr4:65406570-65406412 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 43, 117

Conread position: 1-167
Cow position: chr4:49001509-49001338 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 41, 0

Conread position: 1-168
Cow position: chr4:5189215-5189050 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 43, 65

Conread position: 1-168
Cow position: chr4:39767137-39767309 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 138
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 43, 0

Conread position: 1-172
Cow position: chr4:23065976-23065804 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 61, 77

Conread position: 1-172
Cow position: chr4:25906532-25906366 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 138
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 49, 0

Conread position: 1-173
Cow position: chr4:51898795-51898970 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 115

Conread position: 1-175
Cow position: chr4:23311474-23311293 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 57, 175

Conread position: 1-175
Cow position: chr4:24415079-24415251 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 36, 138

Conread position: 1-178
Cow position: chr4:7213794-7213614 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 147
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 22, 83

Conread position: 1-189
Cow position: chr4:30574248-30574431 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 136
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 84, 15

Conread position: 1-196
Cow position: chr4:58512772-58512571 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 90, 0

Conread position: 1-212
Cow position: chr4:42672963-42673176 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 146
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 43, 112

Conread position: 2-164
Cow position: chr4:22528595-22528432 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 139
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 142, 0

Conread position: 2-165
Cow position: chr4:46083100-46082937 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 133
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 42, 120

Conread position: 2-166
Cow position: chr4:27372066-27371906 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 151, 44

Conread position: 2-166
Cow position: chr4:35870008-35870158 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 2-166
Cow position: chr4:58948120-58947956 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 25, 115

Conread position: 2-169
Cow position: chr4:59833729-59833904 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 142
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 44, 0

Conread position: 2-169
Cow position: chr4:61271841-61271671 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 40, 80

Conread position: 2-175
Cow position: chr4:5554000-5553822 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 147
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 42, 0

Conread position: 2-197
Cow position: chr4:2610028-2610221 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 168, 98

Conread position: 2-203
Cow position: chr4:14159331-14159127 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 37

Conread position: 2-273
Cow position: chr4:59888806-59888516 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 221
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 42, 80

Conread position: 2-277
Cow position: chr4:62411665-62411962 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 211
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 34, 0

Conread position: 3-128
Cow position: chr4:48283886-48284009 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 11, 0

Conread position: 3-160
Cow position: chr4:9547772-9547921 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 126
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 44, 0

Conread position: 3-160
Cow position: chr4:65116419-65116252 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 3-164
Cow position: chr4:9482425-9482259 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 3-165
Cow position: chr4:27561190-27561352 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 140
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-166
Cow position: chr4:16339799-16339643 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 90, 0

Conread position: 3-166
Cow position: chr4:21259010-21259172 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 137
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 88, 0

Conread position: 3-166
Cow position: chr4:22249652-22249494 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 136
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 57, 96

Conread position: 3-166
Cow position: chr4:23494725-23494880 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 87, 0

Conread position: 3-166
Cow position: chr4:68795512-68795340 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 3-173
Cow position: chr4:51768906-51769075 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 109, 88

Conread position: 3-175
Cow position: chr4:6792235-6792401 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 28, 0

Conread position: 3-273
Cow position: chr4:48499640-48499921 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 209
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 123, 32

Conread position: 4-166
Cow position: chr4:25972691-25972853 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 139
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 18, 88

Conread position: 4-169
Cow position: chr4:33357726-33357893 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 9

Conread position: 6-165
Cow position: chr4:22115403-22115563 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 141
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 6-175
Cow position: chr4:68634761-68634925 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 137
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 28, 0

Conread position: 9-277
Cow position: chr4:59719432-59719712 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 207
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 18, 0

Conread position: 10-164
Cow position: chr4:47444964-47444815 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 36, 79

Conread position: 10-175
Cow position: chr4:59565335-59565505 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 32, 0

Conread position: 12-165
Cow position: chr4:18439770-18439613 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 128
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 25, 51

Conread position: 18-166
Cow position: chr4:45918843-45918991 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 123
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 19, 98

Conread position: 19-169
Cow position: chr4:31634754-31634611 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 20-175
Cow position: chr4:6133782-6133936 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 144, 0

Conread position: 27-175
Cow position: chr4:50769950-50769801 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 17, 98

Conread position: 38-168
Cow position: chr4:23166735-23166863 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 111
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 53, 8

Conread position: 39-165
Cow position: chr4:23758634-23758760 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 108
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 39-166
Cow position: chr4:41154474-41154601 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 44-164
Cow position: chr4:63418089-63417969 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 47-274
Cow position: chr4:63784284-63784045 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 18, 176

Conread position: 49-172
Cow position: chr4:60783884-60784006 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 119, 0

Conread position: 64-166
Cow position: chr4:24497962-24497861 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 87
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 64-166
Cow position: chr4:37880787-37880888 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 88
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 64-166
Cow position: chr4:45116206-45116104 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 87
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 56

Conread position: 73-196
Cow position: chr4:12667476-12667353 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 64, 97

Show alignments to all cow chromosomes.