Cow genome map

Conread name: Ovi2-UMC-peov3-004-f11

Conread position: 1-98
Cow position: chr6:54357535-54357438 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-118
Cow position: chr6:38594665-38594548 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-130
Cow position: chr6:10705931-10705801 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 110
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 114, 0

Conread position: 1-134
Cow position: chr6:52002208-52002340 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 1-144
Cow position: chr6:55366482-55366335 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 1-146
Cow position: chr6:50318217-50318066 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 104, 69

Conread position: 1-156
Cow position: chr6:24631259-24631098 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 43, 157

Conread position: 1-157
Cow position: chr6:33984805-33984970 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 20, 0

Conread position: 1-160
Cow position: chr6:11789843-11789999 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 127
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 37, 0

Conread position: 1-160
Cow position: chr6:22968916-22969078 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 139
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 43, 142

Conread position: 1-160
Cow position: chr6:38641337-38641491 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 1-161
Cow position: chr6:3374734-3374569 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 1-163
Cow position: chr6:28164634-28164799 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 36, 28

Conread position: 1-164
Cow position: chr6:1891007-1890843 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 138
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 62, 87

Conread position: 1-164
Cow position: chr6:6943843-6943681 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 87

Conread position: 1-164
Cow position: chr6:9026356-9026523 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 142
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 148, 0

Conread position: 1-164
Cow position: chr6:44377104-44377270 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 43, 18

Conread position: 1-165
Cow position: chr6:12934299-12934133 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 28, 47

Conread position: 1-165
Cow position: chr6:24623138-24622973 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 137
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 41, 88

Conread position: 1-165
Cow position: chr6:37739025-37739191 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 142
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 96, 0

Conread position: 1-165
Cow position: chr6:41264961-41265122 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 94

Conread position: 1-165
Cow position: chr6:48807156-48806993 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 131
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 33, 0

Conread position: 1-165
Cow position: chr6:63197332-63197163 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 11

Conread position: 1-166
Cow position: chr6:827867-827701 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 150, 61

Conread position: 1-166
Cow position: chr6:6731103-6731269 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 39, 28

Conread position: 1-166
Cow position: chr6:7824600-7824766 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 142
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 45, 8

Conread position: 1-166
Cow position: chr6:8318325-8318160 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 140
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 1-166
Cow position: chr6:19427288-19427457 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 144
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 43, 0

Conread position: 1-166
Cow position: chr6:24223321-24223154 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 135
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 73, 0

Conread position: 1-166
Cow position: chr6:24649686-24649855 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 26, 97

Conread position: 1-166
Cow position: chr6:31425724-31425559 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 43, 104

Conread position: 1-166
Cow position: chr6:35415684-35415515 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 137
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 17, 0

Conread position: 1-166
Cow position: chr6:44372104-44371943 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 135
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 56, 0

Conread position: 1-166
Cow position: chr6:44511079-44511247 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 136
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 43, 132

Conread position: 1-166
Cow position: chr6:48573045-48572880 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 135
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 35, 84

Conread position: 1-166
Cow position: chr6:56041783-56041622 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 59, 0

Conread position: 1-166
Cow position: chr6:58073884-58074050 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 43, 27

Conread position: 1-166
Cow position: chr6:60152875-60153040 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 134
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 1-166
Cow position: chr6:64436491-64436321 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 43, 24

Conread position: 1-166
Cow position: chr6:65871736-65871895 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 42, 104

Conread position: 1-169
Cow position: chr6:12387485-12387319 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 148
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 0

Conread position: 1-169
Cow position: chr6:20379626-20379460 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 144
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 124, 55

Conread position: 1-169
Cow position: chr6:54807062-54807234 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 141
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 43, 158

Conread position: 1-172
Cow position: chr6:8965928-8966101 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 43, 81

Conread position: 1-172
Cow position: chr6:16634381-16634208 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 43, 0

Conread position: 1-172
Cow position: chr6:42617718-42617892 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 1-172
Cow position: chr6:57119090-57118930 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 87, 38

Conread position: 1-175
Cow position: chr6:55842322-55842144 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 56, 21

Conread position: 1-196
Cow position: chr6:51191652-51191856 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 16, 182

Conread position: 1-269
Cow position: chr6:16220188-16219917 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 204
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 56, 153

Conread position: 1-273
Cow position: chr6:8986544-8986254 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 216
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 35, 63

Conread position: 1-273
Cow position: chr6:10237210-10237486 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 207
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 173, 43

Conread position: 1-275
Cow position: chr6:62346012-62345730 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 80

Conread position: 2-160
Cow position: chr6:36652259-36652416 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 111, 0

Conread position: 2-166
Cow position: chr6:52401700-52401863 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 89, 34

Conread position: 2-166
Cow position: chr6:54365485-54365327 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 86, 14

Conread position: 2-169
Cow position: chr6:47327227-47327059 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 143
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 2-175
Cow position: chr6:60931060-60930886 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 19, 69

Conread position: 2-192
Cow position: chr6:899450-899262 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 87, 94

Conread position: 2-265
Cow position: chr6:38895235-38894968 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 44

Conread position: 3-156
Cow position: chr6:35703345-35703195 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 11, 0

Conread position: 3-165
Cow position: chr6:3118356-3118194 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 31, 64

Conread position: 3-165
Cow position: chr6:15046252-15046078 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 139
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 80, 28

Conread position: 3-165
Cow position: chr6:47574746-47574908 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 86, 93

Conread position: 3-166
Cow position: chr6:30474164-30474324 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 42, 64

Conread position: 3-166
Cow position: chr6:47204314-47204480 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 139
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 41, 0

Conread position: 3-166
Cow position: chr6:54144142-54144309 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 40, 0

Conread position: 3-166
Cow position: chr6:56376509-56376348 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 133
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 33, 0

Conread position: 3-166
Cow position: chr6:59249840-59249680 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 134
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 40, 87

Conread position: 3-169
Cow position: chr6:4079542-4079381 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 136
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 98, 0

Conread position: 3-175
Cow position: chr6:1907381-1907554 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 34, 101

Conread position: 4-175
Cow position: chr6:58315888-58316059 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 140
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 5-166
Cow position: chr6:6995103-6994951 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 131
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 38, 0

Conread position: 5-262
Cow position: chr6:67436831-67437106 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 108

Conread position: 6-164
Cow position: chr6:33851947-33851796 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 72, 0

Conread position: 6-172
Cow position: chr6:6367817-6367660 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 83, 7

Conread position: 6-196
Cow position: chr6:52556631-52556445 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 152
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 14, 81

Conread position: 7-160
Cow position: chr6:415939-416096 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 31, 110

Conread position: 7-161
Cow position: chr6:47026326-47026476 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 93, 0

Conread position: 7-166
Cow position: chr6:24583389-24583221 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 136
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 37, 152

Conread position: 7-166
Cow position: chr6:36194432-36194597 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 37, 129

Conread position: 9-172
Cow position: chr6:50800556-50800399 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 97, 37

Conread position: 12-166
Cow position: chr6:17534671-17534513 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 32, 152

Conread position: 12-166
Cow position: chr6:47625117-47624960 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 139
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 32, 144

Conread position: 13-166
Cow position: chr6:53673714-53673864 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 106, 49

Conread position: 14-166
Cow position: chr6:7173905-7173749 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 28, 0

Conread position: 16-166
Cow position: chr6:65852689-65852543 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 127
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 81, 0

Conread position: 19-134
Cow position: chr6:52731290-52731175 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 99
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 19-169
Cow position: chr6:55892619-55892777 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 25, 0

Conread position: 21-134
Cow position: chr6:30160178-30160295 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 100
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 23, 0

Conread position: 24-166
Cow position: chr6:18582947-18582807 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 92, 7

Conread position: 26-166
Cow position: chr6:37053866-37054008 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 88, 10

Conread position: 26-166
Cow position: chr6:48344197-48344335 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 29-166
Cow position: chr6:59588543-59588403 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 8, 31

Conread position: 34-166
Cow position: chr6:17669167-17669297 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 101, 0

Conread position: 35-165
Cow position: chr6:31635816-31635690 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 36-166
Cow position: chr6:3545569-3545694 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 36-166
Cow position: chr6:61322484-61322612 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 36-273
Cow position: chr6:40104609-40104838 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 183
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 85, 129

Conread position: 47-162
Cow position: chr6:10237157-10237041 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 67, 0

Conread position: 61-175
Cow position: chr6:61218131-61218015 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 74, 0

Conread position: 62-172
Cow position: chr6:15025990-15025879 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 64-166
Cow position: chr6:4164267-4164165 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 89
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 56, 14

Conread position: 65-158
Cow position: chr6:56860452-56860545 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 83
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 160-273
Cow position: chr6:20379444-20379326 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 0

Show alignments to all cow chromosomes.