Cow genome map
| Conread name: | Pig1-100P14 |
| Conread position: | 58-394 |
| Cow position: | chrX:5322723-5323062 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 88-394 |
| Cow position: | chrX:9126335-9126021 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 12, 130 |
| Conread position: | 98-271 |
| Cow position: | chrX:36136590-36136778 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 98-373 |
| Cow position: | chrX:38148558-38148273 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 118 |
| Conread position: | 98-375 |
| Cow position: | chrX:27425363-27425645 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 28, 118 |
| Conread position: | 98-376 |
| Cow position: | chrX:22618347-22618619 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 28, 62 |
| Conread position: | 98-379 |
| Cow position: | chrX:12354197-12353918 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 28, 117 |
| Conread position: | 98-385 |
| Cow position: | chrX:5394043-5394339 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 28, 118 |
| Conread position: | 98-385 |
| Cow position: | chrX:8589124-8588835 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 28, 117 |
| Conread position: | 98-388 |
| Cow position: | chrX:1547941-1547641 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 28, 118 |
| Conread position: | 98-388 |
| Cow position: | chrX:26528937-26528643 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 98-394 |
| Cow position: | chrX:1834780-1834480 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 26, 122 |
| Conread position: | 98-394 |
| Cow position: | chrX:2561897-2562196 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 28, 118 |
| Conread position: | 98-394 |
| Cow position: | chrX:16041226-16041542 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 28, 51 |
| Conread position: | 98-394 |
| Cow position: | chrX:29097158-29096857 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 118 |
| Conread position: | 98-394 |
| Cow position: | chrX:29172800-29173101 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 29, 118 |
| Conread position: | 98-394 |
| Cow position: | chrX:29286396-29286091 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 121 |
| Conread position: | 98-395 |
| Cow position: | chrX:2481669-2481969 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 120 |
| Conread position: | 98-395 |
| Cow position: | chrX:5305118-5304814 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 116 |
| Conread position: | 98-395 |
| Cow position: | chrX:13412171-13412471 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 98-395 |
| Cow position: | chrX:18952720-18953020 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 98-395 |
| Cow position: | chrX:22489106-22488806 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 119 |
| Conread position: | 98-395 |
| Cow position: | chrX:23020286-23019990 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 118 |
| Conread position: | 98-395 |
| Cow position: | chrX:23040161-23040461 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 121 |
| Conread position: | 98-395 |
| Cow position: | chrX:26757652-26757951 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 117 |
| Conread position: | 98-395 |
| Cow position: | chrX:28626665-28626974 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 242 |
| Conread position: | 98-395 |
| Cow position: | chrX:44388725-44388430 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 98-396 |
| Cow position: | chrX:6281792-6282099 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 238 |
| Conread position: | 98-396 |
| Cow position: | chrX:12668788-12669089 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 118 |
| Conread position: | 99-394 |
| Cow position: | chrX:12343897-12343597 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 27, 117 |
| Conread position: | 99-394 |
| Cow position: | chrX:39562972-39563273 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 27, 120 |
| Conread position: | 100-315 |
| Cow position: | chrX:17666824-17667043 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 23, 165 |
| Conread position: | 100-316 |
| Cow position: | chrX:27961819-27961594 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 24, 120 |
| Conread position: | 100-385 |
| Cow position: | chrX:15486808-15487078 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 100-394 |
| Cow position: | chrX:12314791-12315094 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 119 |
| Conread position: | 101-367 |
| Cow position: | chrX:30365825-30366094 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 26, 115 |
| Conread position: | 102-362 |
| Cow position: | chrX:34219270-34219004 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 115 |
| Conread position: | 102-390 |
| Cow position: | chrX:25613007-25612724 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 24, 8 |
| Conread position: | 102-395 |
| Cow position: | chrX:21059742-21059443 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 114 |
| Conread position: | 110-389 |
| Cow position: | chrX:4797275-4796991 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 106 |
| Conread position: | 114-280 |
| Cow position: | chrX:30182990-30183162 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 10, 105 |
| Conread position: | 114-329 |
| Cow position: | chrX:15623554-15623773 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 12, 102 |
| Conread position: | 114-385 |
| Cow position: | chrX:15178490-15178754 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 12, 46 |
| Conread position: | 114-394 |
| Cow position: | chrX:16811498-16811781 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 74, 100 |
| Conread position: | 114-394 |
| Cow position: | chrX:18658845-18659126 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 9, 101 |
| Conread position: | 114-394 |
| Cow position: | chrX:30011945-30011660 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 12, 102 |
| Conread position: | 114-394 |
| Cow position: | chrX:30231148-30231435 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 107 |
| Conread position: | 114-394 |
| Cow position: | chrX:37849940-37849661 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 110, 17 |
| Conread position: | 114-395 |
| Cow position: | chrX:971729-971436 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 102 |
| Conread position: | 114-395 |
| Cow position: | chrX:23277973-23277687 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 102 |
| Conread position: | 114-395 |
| Cow position: | chrX:23455071-23455356 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 77 |
| Conread position: | 114-395 |
| Cow position: | chrX:32066221-32066504 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 211 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 116-393 |
| Cow position: | chrX:24134316-24134595 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 122-395 |
| Cow position: | chrX:28650616-28650889 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 124-398 |
| Cow position: | chrX:2011765-2012039 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 36, 104 |
| Conread position: | 125-353 |
| Cow position: | chrX:35386246-35386479 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 127-395 |
| Cow position: | chrX:13053940-13053668 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 87 |
| Conread position: | 136-332 |
| Cow position: | chrX:505410-505608 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 15, 71 |
| Conread position: | 136-395 |
| Cow position: | chrX:41102543-41102805 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 37, 78 |
| Conread position: | 141-385 |
| Cow position: | chrX:31494339-31494089 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 141-395 |
| Cow position: | chrX:12183837-12183577 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 19, 81 |
| Conread position: | 142-396 |
| Cow position: | chrX:1391858-1391601 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 12, 97 |
| Conread position: | 156-395 |
| Cow position: | chrX:13082115-13082347 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 61, 84 |
Show alignments to all cow chromosomes.