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Cow genome map

           
Conread name:
           
Pig1-107L24
        

               
Conread position:
               
1-162
               

               
Cow position:
               
chr13:13780978-13781145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 108
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr13:54389221-54388874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
13, 307
               

               
Conread position:
               
1-416
               

               
Cow position:
               
chr13:5279405-5278944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
2-146
               

               
Cow position:
               
chr13:57446311-57446170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
137, 63
               

               
Conread position:
               
2-172
               

               
Cow position:
               
chr13:28695660-28695835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
2-220
               

               
Cow position:
               
chr13:6926314-6926540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
2-337
               

               
Cow position:
               
chr13:3315869-3315530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 63
               

               
Conread position:
               
2-537
               

               
Cow position:
               
chr13:15162834-15162306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 157
               

               
Conread position:
               
2-544
               

               
Cow position:
               
chr13:34261037-34261621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 63
               

               
Conread position:
               
3-129
               

               
Cow position:
               
chr13:55007967-55007841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-138
               

               
Cow position:
               
chr13:9108869-9108735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
23, 29
               

               
Conread position:
               
3-138
               

               
Cow position:
               
chr13:9551166-9551301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-145
               

               
Cow position:
               
chr13:29665820-29665969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-146
               

               
Cow position:
               
chr13:26377618-26377467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 93
               

               
Conread position:
               
3-147
               

               
Cow position:
               
chr13:53847316-53847172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-152
               

               
Cow position:
               
chr13:37946583-37946434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
135, 68
               

               
Conread position:
               
3-155
               

               
Cow position:
               
chr13:43576813-43576972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chr13:1339342-1339179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chr13:8367521-8367677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 135
               

               
Conread position:
               
3-162
               

               
Cow position:
               
chr13:54128028-54127866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 99
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr13:48126907-48127074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr13:24107743-24107581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr13:8537621-8537790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr13:28605592-28605422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chr13:1363263-1363425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
135, 62
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chr13:22046207-22046038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 38
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chr13:23685200-23685029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-168
               

               
Cow position:
               
chr13:3149630-3149459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-168
               

               
Cow position:
               
chr13:11565642-11565808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
3-168
               

               
Cow position:
               
chr13:25521121-25520944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-169
               

               
Cow position:
               
chr13:37555068-37554902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr13:3153550-3153723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
49, 79
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr13:6113729-6113553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr13:21246910-21246736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr13:369323-369147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
49, 105
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr13:13797014-13796835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr13:52027333-52027161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chr13:8393079-8392919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
136, 23
               

               
Conread position:
               
3-176
               

               
Cow position:
               
chr13:45499034-45499208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr13:9124731-9124905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
33, 38
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr13:11146856-11147038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr13:11410511-11410695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr13:34533126-34532951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
137, 50
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr13:42302239-42302059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 98
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr13:52913679-52913854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
136, 63
               

               
Conread position:
               
3-182
               

               
Cow position:
               
chr13:3387989-3387803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
49, 144
               

               
Conread position:
               
3-182
               

               
Cow position:
               
chr13:50646826-50646646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
3-186
               

               
Cow position:
               
chr13:24094514-24094328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
49, 79
               

               
Conread position:
               
3-188
               

               
Cow position:
               
chr13:4404337-4404522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
136, 43
               

               
Conread position:
               
3-188
               

               
Cow position:
               
chr13:43788045-43787846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
3-188
               

               
Cow position:
               
chr13:43839884-43839685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
3-190
               

               
Cow position:
               
chr13:2393194-2393379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
137, 64
               

               
Conread position:
               
3-195
               

               
Cow position:
               
chr13:14644856-14645049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
3-195
               

               
Cow position:
               
chr13:24796686-24796870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 13
               

               
Conread position:
               
3-195
               

               
Cow position:
               
chr13:35557308-35557113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chr13:48222746-48222549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr13:20795405-20795207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
59, 119
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr13:7046683-7046873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
137, 54
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr13:52536374-52536568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
137, 43
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr13:8699940-8699733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr13:10522742-10522937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr13:13775450-13775239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr13:17813274-17813475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr13:28536518-28536318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 157
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr13:16096379-16096583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 7
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr13:25941459-25941258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
49, 11
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr13:25978391-25978188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 115
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr13:50768394-50768601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 162
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr13:15144028-15143837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
138, 49
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr13:16908016-16908223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr13:21981167-21980970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
136, 106
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr13:22115478-22115699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
61, 23
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr13:49356246-49356043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr13:6860978-6861194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr13:15083464-15083672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 85
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr13:15996839-15997047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr13:18197805-18197596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 179
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr13:24155313-24155542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr13:45352830-45353044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr13:56958780-56958983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
49, 113
               

               
Conread position:
               
3-214
               

               
Cow position:
               
chr13:2776087-2776304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
49, 209
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr13:585071-584857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
49, 154
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr13:14796008-14796223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 143
               

               
Conread position:
               
3-217
               

               
Cow position:
               
chr13:15993186-15993406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
49, 122
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr13:50457654-50457881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr13:40541306-40541083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
3-227
               

               
Cow position:
               
chr13:55765373-55765148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 90
               

               
Conread position:
               
3-233
               

               
Cow position:
               
chr13:38035642-38035879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr13:25969808-25970041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
137, 87
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr13:52641148-52640903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
49, 29
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr13:52934231-52934463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
3-250
               

               
Cow position:
               
chr13:6980728-6980967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
135, 63
               

               
Conread position:
               
3-258
               

               
Cow position:
               
chr13:62007910-62008181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chr13:17823147-17822871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 170
               

               
Conread position:
               
3-272
               

               
Cow position:
               
chr13:27180840-27181115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
48, 209
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr13:20137620-20137915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr13:56035054-56034768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chr13:21127538-21127244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chr13:12974618-12974905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 196
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chr13:620445-620157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
49, 102
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chr13:8667418-8667719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
49, 156
               

               
Conread position:
               
3-297
               

               
Cow position:
               
chr13:16038480-16038183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 99
               

               
Conread position:
               
3-303
               

               
Cow position:
               
chr13:10220760-10221063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
61, 83
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr13:14576018-14576325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 190
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr13:15194918-15194613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
138, 61
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr13:19278898-19279209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
61, 27
               

               
Conread position:
               
3-310
               

               
Cow position:
               
chr13:20261531-20261204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 311
               

               
Conread position:
               
3-314
               

               
Cow position:
               
chr13:11201841-11202157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
57, 176
               

               
Conread position:
               
3-314
               

               
Cow position:
               
chr13:49795841-49796143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 109
               

               
Conread position:
               
3-318
               

               
Cow position:
               
chr13:21280698-21280358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
49, 316
               

               
Conread position:
               
3-322
               

               
Cow position:
               
chr13:2803289-2803601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
136, 72
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr13:17821455-17821133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
3-332
               

               
Cow position:
               
chr13:26848028-26847677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
47, 194
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chr13:3160205-3160536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
193, 122
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chr13:19188117-19188446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 43
               

               
Conread position:
               
3-335
               

               
Cow position:
               
chr13:8374958-8374626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
205, 62
               

               
Conread position:
               
3-335
               

               
Cow position:
               
chr13:38548388-38548724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
49, 105
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr13:9975265-9974925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
110, 50
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr13:10989271-10988928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 143
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr13:14016754-14016422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
51, 26
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr13:17021923-17021582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
10, 124
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr13:17745061-17745386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
205, 67
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr13:24369388-24369727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
136, 17
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr13:26698694-26698350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
65, 149
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr13:34281484-34281823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
82, 43
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr13:42200423-42200762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 300
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr13:43479864-43480204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 76
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr13:52055790-52055452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 37
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr13:54582677-54583024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
49, 133
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr13:15195398-15195056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 86
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr13:19223454-19223793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr13:25604803-25604478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 86
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr13:37985945-37985606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 209
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr13:40491020-40491377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
84, 39
               

               
Conread position:
               
3-339
               

               
Cow position:
               
chr13:9800324-9800653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
40, 106
               

               
Conread position:
               
3-342
               

               
Cow position:
               
chr13:18999334-18999695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-342
               

               
Cow position:
               
chr13:29831624-29831280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 106
               

               
Conread position:
               
3-342
               

               
Cow position:
               
chr13:45593726-45594056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 132
               

               
Conread position:
               
3-344
               

               
Cow position:
               
chr13:44626168-44626527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
48, 116
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr13:5263476-5263132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 264
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr13:12206864-12207199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 55
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr13:24753696-24754037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 62
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr13:37775403-37775071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 81
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr13:49823826-49824179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr13:57475614-57475260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
45, 139
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr13:21242273-21241936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
136, 50
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr13:26261989-26261642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 209
               

               
Conread position:
               
3-348
               

               
Cow position:
               
chr13:32017713-32017367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 209
               

               
Conread position:
               
3-379
               

               
Cow position:
               
chr13:48597712-48598111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
49, 171
               

               
Conread position:
               
3-394
               

               
Cow position:
               
chr13:10845421-10845815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
205, 61
               

               
Conread position:
               
3-396
               

               
Cow position:
               
chr13:37818941-37818536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr13:15193085-15192669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 156
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr13:33054570-33054170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
46, 83
               

               
Conread position:
               
3-407
               

               
Cow position:
               
chr13:19033358-19033782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 79
               

               
Conread position:
               
3-422
               

               
Cow position:
               
chr13:25926591-25927042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 251
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr13:14063718-14063276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
70, 264
               

               
Conread position:
               
3-426
               

               
Cow position:
               
chr13:20784397-20784842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
140, 62
               

               
Conread position:
               
3-426
               

               
Cow position:
               
chr13:37069144-37069601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 311
               

               
Conread position:
               
3-433
               

               
Cow position:
               
chr13:21288282-21287829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 362
               

               
Conread position:
               
3-438
               

               
Cow position:
               
chr13:15041672-15041206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 192
               

               
Conread position:
               
3-449
               

               
Cow position:
               
chr13:33256300-33256773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
45, 141
               

               
Conread position:
               
3-456
               

               
Cow position:
               
chr13:57002525-57003025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-474
               

               
Cow position:
               
chr13:32282928-32283421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 11
               

               
Conread position:
               
3-489
               

               
Cow position:
               
chr13:13088835-13089344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 79
               

               
Conread position:
               
3-491
               

               
Cow position:
               
chr13:27525456-27524943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
3-493
               

               
Cow position:
               
chr13:44201812-44202311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 88
               

               
Conread position:
               
3-507
               

               
Cow position:
               
chr13:42113818-42114352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 471
               

               
Conread position:
               
3-525
               

               
Cow position:
               
chr13:15958425-15958970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 46
               

               
Conread position:
               
3-529
               

               
Cow position:
               
chr13:8362944-8362389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 144
               

               
Conread position:
               
3-531
               

               
Cow position:
               
chr13:21275659-21276215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
3-538
               

               
Cow position:
               
chr13:15868912-15869483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 300
               

               
Conread position:
               
3-538
               

               
Cow position:
               
chr13:17159079-17158498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
3-538
               

               
Cow position:
               
chr13:21235865-21235326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 80
               

               
Conread position:
               
3-539
               

               
Cow position:
               
chr13:20378515-20377975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
3-542
               

               
Cow position:
               
chr13:61977155-61976595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 115
               

               
Conread position:
               
3-543
               

               
Cow position:
               
chr13:13320600-13321147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 359
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr13:4552628-4553167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 62
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr13:6616960-6616376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 296
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr13:6973965-6974537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 92
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr13:20174540-20175111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr13:20821034-20820466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 302
               

               
Conread position:
               
3-555
               

               
Cow position:
               
chr13:20880022-20879453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 194
               

               
Conread position:
               
3-555
               

               
Cow position:
               
chr13:25695964-25695388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 66
               

               
Conread position:
               
3-556
               

               
Cow position:
               
chr13:14411694-14412255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
48, 136
               

               
Conread position:
               
4-138
               

               
Cow position:
               
chr13:5659961-5659827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
4-174
               

               
Cow position:
               
chr13:23975362-23975189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 112
               

               
Conread position:
               
4-251
               

               
Cow position:
               
chr13:1147347-1147091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
44, 80
               

               
Conread position:
               
4-253
               

               
Cow position:
               
chr13:42672626-42672358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
4-291
               

               
Cow position:
               
chr13:18929329-18929631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
37, 132
               

               
Conread position:
               
4-307
               

               
Cow position:
               
chr13:27550539-27550857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
49, 282
               

               
Conread position:
               
4-324
               

               
Cow position:
               
chr13:20288142-20288464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
48, 138
               

               
Conread position:
               
4-332
               

               
Cow position:
               
chr13:20360079-20360413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 261
               

               
Conread position:
               
4-333
               

               
Cow position:
               
chr13:49023062-49022730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
65, 54
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chr13:55674406-55674062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
59, 302
               

               
Conread position:
               
4-337
               

               
Cow position:
               
chr13:2822671-2823007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
41, 260
               

               
Conread position:
               
4-342
               

               
Cow position:
               
chr13:6442303-6441947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
45, 160
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr13:46111772-46112123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
26, 21
               

               
Conread position:
               
4-413
               

               
Cow position:
               
chr13:10925119-10924665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 103
               

               
Conread position:
               
4-421
               

               
Cow position:
               
chr13:24715053-24715486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
135, 59
               

               
Conread position:
               
4-472
               

               
Cow position:
               
chr13:25817333-25817813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 243
               

               
Conread position:
               
4-512
               

               
Cow position:
               
chr13:15289115-15288592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 136
               

               
Conread position:
               
4-530
               

               
Cow position:
               
chr13:52637101-52637639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 160
               

               
Conread position:
               
5-176
               

               
Cow position:
               
chr13:18877007-18877185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
5-178
               

               
Cow position:
               
chr13:20042459-20042284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
47, 131
               

               
Conread position:
               
5-193
               

               
Cow position:
               
chr13:52177407-52177592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
64, 86
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chr13:7104460-7104660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chr13:34873390-34873595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
5-298
               

               
Cow position:
               
chr13:14967410-14967106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
48, 138
               

               
Conread position:
               
5-308
               

               
Cow position:
               
chr13:18994927-18995247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
47, 141
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chr13:25579390-25579053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chr13:28552391-28552731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 83
               

               
Conread position:
               
5-337
               

               
Cow position:
               
chr13:20579723-20580053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 19
               

               
Conread position:
               
5-346
               

               
Cow position:
               
chr13:23667062-23667411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
47, 11
               

               
Conread position:
               
5-434
               

               
Cow position:
               
chr13:18166537-18166992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 301
               

               
Conread position:
               
6-173
               

               
Cow position:
               
chr13:17837131-17836963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
6-190
               

               
Cow position:
               
chr13:38012145-38012325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
133, 59
               

               
Conread position:
               
6-196
               

               
Cow position:
               
chr13:33974166-33973969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
6-196
               

               
Cow position:
               
chr13:37751265-37751068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
8, 147
               

               
Conread position:
               
6-238
               

               
Cow position:
               
chr13:16020665-16020899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
132, 51
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr13:39233021-39232702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
45, 108
               

               
Conread position:
               
6-337
               

               
Cow position:
               
chr13:19582275-19581939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
49, 71
               

               
Conread position:
               
6-386
               

               
Cow position:
               
chr13:52228292-52227886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
6-424
               

               
Cow position:
               
chr13:4665044-4664609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
133, 52
               

               
Conread position:
               
6-424
               

               
Cow position:
               
chr13:9246538-9246966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
52, 25
               

               
Conread position:
               
6-555
               

               
Cow position:
               
chr13:34729035-34728457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 11
               

               
Conread position:
               
7-216
               

               
Cow position:
               
chr13:47243747-47243537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
45, 154
               

               
Conread position:
               
7-278
               

               
Cow position:
               
chr13:16203471-16203760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
7-336
               

               
Cow position:
               
chr13:20497449-20497796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
45, 79
               

               
Conread position:
               
7-503
               

               
Cow position:
               
chr13:11260084-11260581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 142
               

               
Conread position:
               
8-247
               

               
Cow position:
               
chr13:12925588-12925831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
21, 13
               

               
Conread position:
               
8-337
               

               
Cow position:
               
chr13:13338665-13339008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
9-241
               

               
Cow position:
               
chr13:59461056-59461285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
130, 34
               

               
Conread position:
               
9-345
               

               
Cow position:
               
chr13:24230018-24230368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
9-538
               

               
Cow position:
               
chr13:44278153-44278718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 304
               

               
Conread position:
               
11-544
               

               
Cow position:
               
chr13:1155896-1155336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 150
               

               
Conread position:
               
12-210
               

               
Cow position:
               
chr13:52459664-52459471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
127, 36
               

               
Conread position:
               
12-253
               

               
Cow position:
               
chr13:23214826-23215082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
41, 228
               

               
Conread position:
               
12-284
               

               
Cow position:
               
chr13:7998166-7998445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
127, 151
               

               
Conread position:
               
12-543
               

               
Cow position:
               
chr13:20606309-20605748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 218
               

               
Conread position:
               
13-170
               

               
Cow position:
               
chr13:6976030-6975872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
13-178
               

               
Cow position:
               
chr13:9492586-9492751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 100
               

               
Conread position:
               
13-398
               

               
Cow position:
               
chr13:47964360-47963975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
190, 57
               

               
Conread position:
               
13-544
               

               
Cow position:
               
chr13:60509311-60508751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 457
               

               
Conread position:
               
14-372
               

               
Cow position:
               
chr13:52749654-52749288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 127
               

               
Conread position:
               
17-203
               

               
Cow position:
               
chr13:44003513-44003705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
35, 170
               

               
Conread position:
               
17-490
               

               
Cow position:
               
chr13:26480389-26479899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 127
               

               
Conread position:
               
17-539
               

               
Cow position:
               
chr13:46515873-46516429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 408
               

               
Conread position:
               
18-290
               

               
Cow position:
               
chr13:24692771-24693054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
15, 219
               

               
Conread position:
               
18-336
               

               
Cow position:
               
chr13:11643758-11644081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 34
               

               
Conread position:
               
18-434
               

               
Cow position:
               
chr13:19393109-19393547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 276
               

               
Conread position:
               
19-170
               

               
Cow position:
               
chr13:16163405-16163555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
120, 39
               

               
Conread position:
               
19-209
               

               
Cow position:
               
chr13:20519890-20520073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
121, 39
               

               
Conread position:
               
19-253
               

               
Cow position:
               
chr13:55162024-55162275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
19-317
               

               
Cow position:
               
chr13:5911074-5910769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
120, 83
               

               
Conread position:
               
19-345
               

               
Cow position:
               
chr13:37593132-37592782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
19-542
               

               
Cow position:
               
chr13:20666567-20666018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 123
               

               
Conread position:
               
21-337
               

               
Cow position:
               
chr13:43919445-43919113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
31, 291
               

               
Conread position:
               
22-544
               

               
Cow position:
               
chr13:9587763-9587239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 103
               

               
Conread position:
               
26-201
               

               
Cow position:
               
chr13:54652492-54652325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
26-327
               

               
Cow position:
               
chr13:11321783-11321478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
113, 38
               

               
Conread position:
               
32-170
               

               
Cow position:
               
chr13:16790045-16790182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
107, 33
               

               
Conread position:
               
32-178
               

               
Cow position:
               
chr13:30148729-30148582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
32-189
               

               
Cow position:
               
chr13:37980927-37980766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 130
               

               
Conread position:
               
32-530
               

               
Cow position:
               
chr13:151797-152301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 217
               

               
Conread position:
               
32-544
               

               
Cow position:
               
chr13:52057389-52057910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 189
               

               
Conread position:
               
39-203
               

               
Cow position:
               
chr13:51814089-51813930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
101, 31
               

               
Conread position:
               
39-555
               

               
Cow position:
               
chr13:38284140-38283601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 136
               

               
Conread position:
               
41-238
               

               
Cow position:
               
chr13:17350199-17350400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
167, 15
               

               
Conread position:
               
41-336
               

               
Cow position:
               
chr13:23478873-23479173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
98, 208
               

               
Conread position:
               
43-202
               

               
Cow position:
               
chr13:39398494-39398658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
18, 7
               

               
Conread position:
               
43-544
               

               
Cow position:
               
chr13:16014657-16015187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 7
               

               
Conread position:
               
44-422
               

               
Cow position:
               
chr13:35659606-35660003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
28, 6
               

               
Conread position:
               
46-327
               

               
Cow position:
               
chr13:51116175-51115890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
95, 24
               

               
Conread position:
               
47-210
               

               
Cow position:
               
chr13:42640235-42640395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
92, 131
               

               
Conread position:
               
47-219
               

               
Cow position:
               
chr13:9117716-9117549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
92, 52
               

               
Conread position:
               
47-278
               

               
Cow position:
               
chr13:3211397-3211642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
48-465
               

               
Cow position:
               
chr13:51822024-51821595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
24, 95
               

               
Conread position:
               
49-169
               

               
Cow position:
               
chr13:32363329-32363208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
49-177
               

               
Cow position:
               
chr13:1075188-1075059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 31
               

               
Conread position:
               
49-177
               

               
Cow position:
               
chr13:32387153-32387022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
49-178
               

               
Cow position:
               
chr13:6608531-6608401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
49-178
               

               
Cow position:
               
chr13:53865487-53865617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
49-182
               

               
Cow position:
               
chr13:36345797-36345927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
90, 51
               

               
Conread position:
               
49-203
               

               
Cow position:
               
chr13:13182047-13182200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 67
               

               
Conread position:
               
49-336
               

               
Cow position:
               
chr13:5082502-5082797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
90, 97
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chr13:12547057-12546762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 254
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chr13:17622143-17622429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 7
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chr13:56148372-56148685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
90, 270
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chr13:56160595-56160282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
90, 270
               

               
Conread position:
               
49-451
               

               
Cow position:
               
chr13:61047065-61047485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 195
               

               
Conread position:
               
50-177
               

               
Cow position:
               
chr13:28439261-28439389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
50-219
               

               
Cow position:
               
chr13:19750567-19750737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
85, 77
               

               
Conread position:
               
50-234
               

               
Cow position:
               
chr13:37621505-37621320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
151, 90
               

               
Conread position:
               
50-305
               

               
Cow position:
               
chr13:13297531-13297793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
89, 51
               

               
Conread position:
               
50-332
               

               
Cow position:
               
chr13:14771304-14771600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
50-336
               

               
Cow position:
               
chr13:547347-547632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
91, 44
               

               
Conread position:
               
50-336
               

               
Cow position:
               
chr13:17439916-17439623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
151, 90
               

               
Conread position:
               
50-336
               

               
Cow position:
               
chr13:18696693-18696989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 44
               

               
Conread position:
               
50-336
               

               
Cow position:
               
chr13:23960950-23960666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
89, 118
               

               
Conread position:
               
50-336
               

               
Cow position:
               
chr13:45023353-45023065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
158, 28
               

               
Conread position:
               
50-337
               

               
Cow position:
               
chr13:15282082-15281789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 25
               

               
Conread position:
               
50-337
               

               
Cow position:
               
chr13:37640442-37640734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 30
               

               
Conread position:
               
50-339
               

               
Cow position:
               
chr13:2404614-2404889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
186, 40
               

               
Conread position:
               
50-345
               

               
Cow position:
               
chr13:4420182-4420503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
50-346
               

               
Cow position:
               
chr13:607407-607109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
36, 148
               

               
Conread position:
               
50-349
               

               
Cow position:
               
chr13:6389248-6389540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
93, 86
               

               
Conread position:
               
50-350
               

               
Cow position:
               
chr13:9900011-9900310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
160, 59
               

               
Conread position:
               
50-420
               

               
Cow position:
               
chr13:23856063-23856463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
89, 123
               

               
Conread position:
               
50-430
               

               
Cow position:
               
chr13:17971177-17970776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
91, 74
               

               
Conread position:
               
50-445
               

               
Cow position:
               
chr13:18172188-18172599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
89, 255
               

               
Conread position:
               
50-465
               

               
Cow position:
               
chr13:23167251-23166804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
19, 260
               

               
Conread position:
               
50-465
               

               
Cow position:
               
chr13:38873092-38872682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 100
               

               
Conread position:
               
50-479
               

               
Cow position:
               
chr13:17977206-17977641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 64
               

               
Conread position:
               
50-484
               

               
Cow position:
               
chr13:37381653-37382123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
50-512
               

               
Cow position:
               
chr13:12449134-12448648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 40
               

               
Conread position:
               
50-531
               

               
Cow position:
               
chr13:2773979-2774476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 253
               

               
Conread position:
               
50-544
               

               
Cow position:
               
chr13:2413881-2414396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 75
               

               
Conread position:
               
50-544
               

               
Cow position:
               
chr13:36771567-36771050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 13
               

               
Conread position:
               
50-544
               

               
Cow position:
               
chr13:51940584-51941101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 257
               

               
Conread position:
               
50-544
               

               
Cow position:
               
chr13:60430227-60429710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 257
               

               
Conread position:
               
51-174
               

               
Cow position:
               
chr13:15808621-15808743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
88, 51
               

               
Conread position:
               
51-280
               

               
Cow position:
               
chr13:51901437-51901685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
51-336
               

               
Cow position:
               
chr13:20706352-20706059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
89, 243
               

               
Conread position:
               
51-337
               

               
Cow position:
               
chr13:61990469-61990190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
157, 28
               

               
Conread position:
               
51-419
               

               
Cow position:
               
chr13:13176498-13176896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
18, 258
               

               
Conread position:
               
51-555
               

               
Cow position:
               
chr13:46181650-46182156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 29
               

               
Conread position:
               
52-199
               

               
Cow position:
               
chr13:12923731-12923876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
87, 98
               

               
Conread position:
               
52-210
               

               
Cow position:
               
chr13:37503729-37503573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
52-218
               

               
Cow position:
               
chr13:26889076-26889242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
63, 36
               

               
Conread position:
               
52-234
               

               
Cow position:
               
chr13:15984862-15985053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
52-279
               

               
Cow position:
               
chr13:9386167-9385936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
87, 217
               

               
Conread position:
               
52-336
               

               
Cow position:
               
chr13:47756217-47756517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
85, 258
               

               
Conread position:
               
52-337
               

               
Cow position:
               
chr13:20814416-20814136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
87, 154
               

               
Conread position:
               
52-340
               

               
Cow position:
               
chr13:1363548-1363846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
52-345
               

               
Cow position:
               
chr13:20509588-20509888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
98, 160
               

               
Conread position:
               
52-386
               

               
Cow position:
               
chr13:53195424-53195078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
88, 26
               

               
Conread position:
               
52-409
               

               
Cow position:
               
chr13:25547728-25547356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 247
               

               
Conread position:
               
52-414
               

               
Cow position:
               
chr13:7076111-7076498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 128
               

               
Conread position:
               
52-531
               

               
Cow position:
               
chr13:40651788-40652292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 223
               

               
Conread position:
               
52-539
               

               
Cow position:
               
chr13:12876118-12875617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 60
               

               
Conread position:
               
52-544
               

               
Cow position:
               
chr13:8203012-8202518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 154
               

               
Conread position:
               
52-544
               

               
Cow position:
               
chr13:58043483-58044000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 30
               

               
Conread position:
               
53-241
               

               
Cow position:
               
chr13:21294930-21295123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
53-257
               

               
Cow position:
               
chr13:17837806-17838016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
53-337
               

               
Cow position:
               
chr13:1043107-1042813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 27
               

               
Conread position:
               
53-339
               

               
Cow position:
               
chr13:9265971-9265682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
87, 29
               

               
Conread position:
               
53-398
               

               
Cow position:
               
chr13:55316342-55315963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 258
               

               
Conread position:
               
54-208
               

               
Cow position:
               
chr13:24110336-24110491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
54-289
               

               
Cow position:
               
chr13:23141729-23141958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
86, 119
               

               
Conread position:
               
54-332
               

               
Cow position:
               
chr13:11381870-11381579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
31, 253
               

               
Conread position:
               
54-337
               

               
Cow position:
               
chr13:7488397-7488687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
89, 109
               

               
Conread position:
               
54-337
               

               
Cow position:
               
chr13:52284673-52284957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
152, 16
               

               
Conread position:
               
54-544
               

               
Cow position:
               
chr13:185386-185876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 234
               

               
Conread position:
               
55-218
               

               
Cow position:
               
chr13:36666417-36666253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
55-314
               

               
Cow position:
               
chr13:11591609-11591871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
65, 12
               

               
Conread position:
               
55-337
               

               
Cow position:
               
chr13:27493999-27493703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
95, 14
               

               
Conread position:
               
55-339
               

               
Cow position:
               
chr13:37803748-37804030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
85, 146
               

               
Conread position:
               
56-339
               

               
Cow position:
               
chr13:8609689-8609401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 228
               

               
Conread position:
               
56-393
               

               
Cow position:
               
chr13:13465908-13465569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
84, 105
               

               
Conread position:
               
56-555
               

               
Cow position:
               
chr13:46736075-46736601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 26
               

               
Conread position:
               
57-398
               

               
Cow position:
               
chr13:43185021-43184646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
58-280
               

               
Cow position:
               
chr13:17110087-17110312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
142, 78
               

               
Conread position:
               
58-338
               

               
Cow position:
               
chr13:26369384-26369675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 74
               

               
Conread position:
               
58-538
               

               
Cow position:
               
chr13:13765650-13766122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 71
               

               
Conread position:
               
58-544
               

               
Cow position:
               
chr13:20562853-20563363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 248
               

               
Conread position:
               
58-544
               

               
Cow position:
               
chr13:28683222-28683726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 245
               

               
Conread position:
               
59-336
               

               
Cow position:
               
chr13:965960-966220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
27, 16
               

               
Conread position:
               
59-336
               

               
Cow position:
               
chr13:21283843-21283563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
79, 190
               

               
Conread position:
               
59-348
               

               
Cow position:
               
chr13:39367820-39368116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 207
               

               
Conread position:
               
60-234
               

               
Cow position:
               
chr13:6342226-6342045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
80, 90
               

               
Conread position:
               
60-337
               

               
Cow position:
               
chr13:20231328-20231056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
80, 69
               

               
Conread position:
               
61-336
               

               
Cow position:
               
chr13:53566464-53566742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
80, 161
               

               
Conread position:
               
62-334
               

               
Cow position:
               
chr13:9593370-9593653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
79, 32
               

               
Conread position:
               
62-538
               

               
Cow position:
               
chr13:25435260-25434763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
63-342
               

               
Cow position:
               
chr13:25537489-25537785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
77, 7
               

               
Conread position:
               
65-337
               

               
Cow position:
               
chr13:54344648-54344920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
171, 24
               

               
Conread position:
               
66-261
               

               
Cow position:
               
chr13:827114-827310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
66-422
               

               
Cow position:
               
chr13:40722839-40722460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 273
               

               
Conread position:
               
66-425
               

               
Cow position:
               
chr13:48037491-48037873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
134, 74
               

               
Conread position:
               
66-446
               

               
Cow position:
               
chr13:45725754-45726153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 196
               

               
Conread position:
               
66-560
               

               
Cow position:
               
chr13:43762037-43762559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 16
               

               
Conread position:
               
67-292
               

               
Cow position:
               
chr13:43829113-43829344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
73, 198
               

               
Conread position:
               
67-336
               

               
Cow position:
               
chr13:11460502-11460768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
74, 160
               

               
Conread position:
               
68-430
               

               
Cow position:
               
chr13:11060857-11061243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 162
               

               
Conread position:
               
69-345
               

               
Cow position:
               
chr13:23270334-23270057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
70, 81
               

               
Conread position:
               
70-248
               

               
Cow position:
               
chr13:25428351-25428169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
69, 102
               

               
Conread position:
               
70-438
               

               
Cow position:
               
chr13:46312141-46311768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
139, 44
               

               
Conread position:
               
70-544
               

               
Cow position:
               
chr13:31813747-31814237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 171
               

               
Conread position:
               
71-296
               

               
Cow position:
               
chr13:49457557-49457781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
67, 103
               

               
Conread position:
               
71-414
               

               
Cow position:
               
chr13:20180288-20180639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
69, 25
               

               
Conread position:
               
73-555
               

               
Cow position:
               
chr13:7663546-7663048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 7
               

               
Conread position:
               
75-234
               

               
Cow position:
               
chr13:51857008-51856843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
75-298
               

               
Cow position:
               
chr13:47322533-47322295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
64, 234
               

               
Conread position:
               
79-336
               

               
Cow position:
               
chr13:15885142-15884870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
80-334
               

               
Cow position:
               
chr13:17966330-17966064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
5, 226
               

               
Conread position:
               
82-211
               

               
Cow position:
               
chr13:18516930-18517059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 42
               

               
Conread position:
               
82-337
               

               
Cow position:
               
chr13:6153899-6153635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
59, 8
               

               
Conread position:
               
82-345
               

               
Cow position:
               
chr13:8652558-8652282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 233
               

               
Conread position:
               
82-509
               

               
Cow position:
               
chr13:43139330-43138892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 68
               

               
Conread position:
               
82-555
               

               
Cow position:
               
chr13:22085862-22085376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 223
               

               
Conread position:
               
83-337
               

               
Cow position:
               
chr13:15110199-15110468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
57, 226
               

               
Conread position:
               
84-544
               

               
Cow position:
               
chr13:20650101-20649615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 346
               

               
Conread position:
               
86-518
               

               
Cow position:
               
chr13:25531902-25531444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 74
               

               
Conread position:
               
89-345
               

               
Cow position:
               
chr13:8201592-8201330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
54, 73
               

               
Conread position:
               
90-210
               

               
Cow position:
               
chr13:15739585-15739702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 62
               

               
Conread position:
               
92-336
               

               
Cow position:
               
chr13:9643993-9643739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
93-319
               

               
Cow position:
               
chr13:60389593-60389356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
47, 125
               

               
Conread position:
               
93-335
               

               
Cow position:
               
chr13:52879297-52879554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
47, 166
               

               
Conread position:
               
95-417
               

               
Cow position:
               
chr13:8524721-8524376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
46, 180
               

               
Conread position:
               
95-517
               

               
Cow position:
               
chr13:8839094-8838653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
23, 104
               

               
Conread position:
               
96-234
               

               
Cow position:
               
chr13:60393682-60393826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
97-278
               

               
Cow position:
               
chr13:16187997-16187807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
43, 186
               

               
Conread position:
               
97-334
               

               
Cow position:
               
chr13:26383336-26383090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
97-442
               

               
Cow position:
               
chr13:18243761-18244125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 350
               

               
Conread position:
               
98-312
               

               
Cow position:
               
chr13:50713110-50713325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
42, 116
               

               
Conread position:
               
111-421
               

               
Cow position:
               
chr13:61166537-61166208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
97, 135
               

               
Conread position:
               
112-314
               

               
Cow position:
               
chr13:25380877-25381087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
112-342
               

               
Cow position:
               
chr13:52929625-52929862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
112-527
               

               
Cow position:
               
chr13:61548068-61547648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
26, 53
               

               
Conread position:
               
114-336
               

               
Cow position:
               
chr13:15902940-15903163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
27, 133
               

               
Conread position:
               
117-544
               

               
Cow position:
               
chr13:6835876-6835438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
120-425
               

               
Cow position:
               
chr13:60329681-60330004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 13
               

               
Conread position:
               
122-497
               

               
Cow position:
               
chr13:21039675-21039278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 33
               

               
Conread position:
               
124-500
               

               
Cow position:
               
chr13:16834149-16833761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
16, 5
               

               
Conread position:
               
134-416
               

               
Cow position:
               
chr13:16024525-16024832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
7, 171
               

               
Conread position:
               
142-538
               

               
Cow position:
               
chr13:48252027-48251613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 30
               

               
Conread position:
               
142-555
               

               
Cow position:
               
chr13:20440636-20440218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 106
               

               
Conread position:
               
143-334
               

               
Cow position:
               
chr13:14870478-14870674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
145-345
               

               
Cow position:
               
chr13:1779777-1779989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
145-542
               

               
Cow position:
               
chr13:37517193-37516767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
146-425
               

               
Cow position:
               
chr13:5658777-5658478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
62, 118
               

               
Conread position:
               
148-544
               

               
Cow position:
               
chr13:19178223-19178645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 307
               

               
Conread position:
               
149-347
               

               
Cow position:
               
chr13:20128618-20128822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
59, 152
               

               
Conread position:
               
156-337
               

               
Cow position:
               
chr13:53070206-53070022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
62, 24
               

               
Conread position:
               
156-392
               

               
Cow position:
               
chr13:48372946-48372718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
80, 48
               

               
Conread position:
               
158-336
               

               
Cow position:
               
chr13:16711588-16711777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
161-337
               

               
Cow position:
               
chr13:61170754-61170571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
165-515
               

               
Cow position:
               
chr13:13265774-13266144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 137
               

               
Conread position:
               
166-345
               

               
Cow position:
               
chr13:22030065-22030244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
70, 49
               

               
Conread position:
               
166-346
               

               
Cow position:
               
chr13:20042001-20041805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
206-544
               

               
Cow position:
               
chr13:47312935-47313268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
211-396
               

               
Cow position:
               
chr13:48944690-48944885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
212-494
               

               
Cow position:
               
chr13:37980617-37980329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 94
               

               
Conread position:
               
245-555
               

               
Cow position:
               
chr13:37947945-37947632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 82
               
Show alignments to all cow chromosomes.