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Cow genome map

           
Conread name:
           
Pig1-107L24
        

               
Conread position:
               
1-345
               

               
Cow position:
               
chr21:31253782-31253436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 71
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr21:24757185-24757018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
137, 149
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr21:18783218-18783396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
2-173
               

               
Cow position:
               
chr21:30977020-30977183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
2-199
               

               
Cow position:
               
chr21:19161963-19161759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
2-204
               

               
Cow position:
               
chr21:30938418-30938630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chr21:26018629-26018414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
50, 121
               

               
Conread position:
               
2-335
               

               
Cow position:
               
chr21:42135371-42135717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
137, 297
               

               
Conread position:
               
2-337
               

               
Cow position:
               
chr21:30231448-30231797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 106
               

               
Conread position:
               
3-130
               

               
Cow position:
               
chr21:30359103-30359228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
3-143
               

               
Cow position:
               
chr21:31258716-31258570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-146
               

               
Cow position:
               
chr21:18495462-18495321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
136, 62
               

               
Conread position:
               
3-147
               

               
Cow position:
               
chr21:3379506-3379653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
3-148
               

               
Cow position:
               
chr21:32536638-32536494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
136, 60
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chr21:438803-438649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
86, 62
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chr21:3135621-3135782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
3-159
               

               
Cow position:
               
chr21:13134844-13134688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
57, 31
               

               
Conread position:
               
3-161
               

               
Cow position:
               
chr21:31278435-31278268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
60, 105
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr21:28882430-28882262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
3-168
               

               
Cow position:
               
chr21:45651214-45651382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr21:15305048-15305223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr21:18450002-18449829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr21:24351098-24350928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
49, 134
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr21:29418818-29418648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr21:745417-745248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
136, 73
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr21:4109024-4108848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr21:5214599-5214421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr21:8986273-8986095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
57, 154
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr21:14746019-14745842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr21:16797099-16796923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 13
               

               
Conread position:
               
3-174
               

               
Cow position:
               
chr21:32647939-32648117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-176
               

               
Cow position:
               
chr21:42355888-42355700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chr21:42017354-42017534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
49, 32
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chr21:42189513-42189688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
136, 72
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr21:26828724-26828903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
49, 151
               

               
Conread position:
               
3-190
               

               
Cow position:
               
chr21:31658907-31659091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
35, 23
               

               
Conread position:
               
3-194
               

               
Cow position:
               
chr21:30145386-30145576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 88
               

               
Conread position:
               
3-195
               

               
Cow position:
               
chr21:27711987-27712192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-195
               

               
Cow position:
               
chr21:37928898-37928700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr21:7066138-7066334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
77, 114
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr21:13842740-13842535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr21:36763309-36763106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr21:40475748-40475543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
49, 175
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr21:9278775-9278566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
39, 181
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr21:13225964-13225758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
57, 33
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr21:41287549-41287757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr21:44829509-44829724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr21:2536889-2537103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 200
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr21:41917992-41918210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
57, 30
               

               
Conread position:
               
3-217
               

               
Cow position:
               
chr21:8430850-8431069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
49, 209
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr21:20213524-20213748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
49, 222
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr21:28907302-28907516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
117, 146
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr21:41610426-41610197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
53, 218
               

               
Conread position:
               
3-220
               

               
Cow position:
               
chr21:24875599-24875377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr21:8545773-8546016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
49, 164
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr21:32392815-32393048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 132
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr21:44724129-44724363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
136, 107
               

               
Conread position:
               
3-239
               

               
Cow position:
               
chr21:24266314-24266561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr21:38720496-38720226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
33, 91
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr21:28030526-28030265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
198, 22
               

               
Conread position:
               
3-280
               

               
Cow position:
               
chr21:10656854-10657146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
49, 98
               

               
Conread position:
               
3-283
               

               
Cow position:
               
chr21:21907194-21907476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
10, 44
               

               
Conread position:
               
3-288
               

               
Cow position:
               
chr21:28919284-28919576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 107
               

               
Conread position:
               
3-289
               

               
Cow position:
               
chr21:13656387-13656682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
47, 103
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chr21:41140468-41140772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
48, 159
               

               
Conread position:
               
3-295
               

               
Cow position:
               
chr21:868672-868984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
3-297
               

               
Cow position:
               
chr21:11779291-11779589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
54, 123
               

               
Conread position:
               
3-305
               

               
Cow position:
               
chr21:7394616-7394314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
136, 29
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr21:40432711-40432379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
57, 318
               

               
Conread position:
               
3-310
               

               
Cow position:
               
chr21:1511533-1511219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
135, 147
               

               
Conread position:
               
3-310
               

               
Cow position:
               
chr21:40266371-40266049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 161
               

               
Conread position:
               
3-314
               

               
Cow position:
               
chr21:10410470-10410142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 145
               

               
Conread position:
               
3-319
               

               
Cow position:
               
chr21:16152687-16152350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
3-328
               

               
Cow position:
               
chr21:22209996-22210334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 289
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr21:6998188-6997846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 56
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr21:30835613-30835270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 174
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chr21:22121749-22121426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
66, 110
               

               
Conread position:
               
3-335
               

               
Cow position:
               
chr21:41621375-41621027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 306
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr21:9301472-9301114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 70
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr21:12916171-12916524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
49, 311
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr21:16915028-16914677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
49, 74
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr21:24858563-24858217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
60, 296
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr21:957916-957573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 96
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr21:10004636-10004981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 306
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr21:14464833-14464481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
66, 212
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr21:18568390-18568745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
60, 337
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr21:23587119-23586781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 51
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr21:23979932-23980281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr21:38449205-38449547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
205, 137
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr21:40134393-40134061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 47
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr21:41156118-41155764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
49, 311
               

               
Conread position:
               
3-342
               

               
Cow position:
               
chr21:12461722-12462074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr21:47294-46931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
49, 313
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr21:7824943-7825283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
49, 170
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr21:10673357-10673024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
81, 55
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr21:17193501-17193867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr21:20153204-20152840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 98
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr21:14452480-14452128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr21:47861428-47861086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
181, 18
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chr21:28244714-28244315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 167
               

               
Conread position:
               
3-390
               

               
Cow position:
               
chr21:5427174-5426774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 52
               

               
Conread position:
               
3-398
               

               
Cow position:
               
chr21:802076-802471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
30, 60
               

               
Conread position:
               
3-421
               

               
Cow position:
               
chr21:82306-81898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
137, 23
               

               
Conread position:
               
3-421
               

               
Cow position:
               
chr21:18318960-18318526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
47, 103
               

               
Conread position:
               
3-422
               

               
Cow position:
               
chr21:9311302-9310842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 314
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr21:8207004-8206587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 55
               

               
Conread position:
               
3-425
               

               
Cow position:
               
chr21:6051752-6051302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
3-434
               

               
Cow position:
               
chr21:23535960-23535500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 189
               

               
Conread position:
               
3-438
               

               
Cow position:
               
chr21:30592067-30592515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
140, 62
               

               
Conread position:
               
3-443
               

               
Cow position:
               
chr21:24797902-24797473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 141
               

               
Conread position:
               
3-450
               

               
Cow position:
               
chr21:8351047-8351530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
3-452
               

               
Cow position:
               
chr21:15444835-15445310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 142
               

               
Conread position:
               
3-463
               

               
Cow position:
               
chr21:29014670-29015131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 70
               

               
Conread position:
               
3-473
               

               
Cow position:
               
chr21:49699790-49700288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-483
               

               
Cow position:
               
chr21:3585117-3585618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 268
               

               
Conread position:
               
3-489
               

               
Cow position:
               
chr21:5970599-5971103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
136, 50
               

               
Conread position:
               
3-497
               

               
Cow position:
               
chr21:39888479-39889020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 319
               

               
Conread position:
               
3-521
               

               
Cow position:
               
chr21:44565482-44566005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 16
               

               
Conread position:
               
3-523
               

               
Cow position:
               
chr21:36756855-36756313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
3-531
               

               
Cow position:
               
chr21:25345111-25344568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 201
               

               
Conread position:
               
3-531
               

               
Cow position:
               
chr21:46848886-46849429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 67
               

               
Conread position:
               
3-537
               

               
Cow position:
               
chr21:30848701-30849260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 65
               

               
Conread position:
               
3-537
               

               
Cow position:
               
chr21:34654317-34653770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 21
               

               
Conread position:
               
3-538
               

               
Cow position:
               
chr21:38901010-38900464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 55
               

               
Conread position:
               
3-543
               

               
Cow position:
               
chr21:37706165-37706740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 242
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr21:4281636-4282187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 99
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr21:11644719-11645309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 307
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr21:12154372-12153810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 107
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr21:14760804-14760262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 28
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr21:15545115-15545685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 100
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr21:15584176-15584726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr21:20160925-20160361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 17
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr21:28810028-28810572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 49
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr21:29069076-29069651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 309
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr21:45970932-45971478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 63
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr21:48637508-48638069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 183
               

               
Conread position:
               
3-547
               

               
Cow position:
               
chr21:3236750-3236206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 73
               

               
Conread position:
               
3-555
               

               
Cow position:
               
chr21:4400040-4399466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 47
               

               
Conread position:
               
3-555
               

               
Cow position:
               
chr21:24296518-24297097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 98
               

               
Conread position:
               
3-555
               

               
Cow position:
               
chr21:38918449-38917901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 21
               

               
Conread position:
               
3-556
               

               
Cow position:
               
chr21:27863272-27863855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 60
               

               
Conread position:
               
4-160
               

               
Cow position:
               
chr21:7424767-7424928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
4-168
               

               
Cow position:
               
chr21:7539279-7539450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
4-182
               

               
Cow position:
               
chr21:6291995-6291810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
4-189
               

               
Cow position:
               
chr21:26735643-26735466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
134, 59
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr21:1562284-1562496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
4-216
               

               
Cow position:
               
chr21:8713711-8713929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
47, 200
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr21:6317439-6317731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 173
               

               
Conread position:
               
4-290
               

               
Cow position:
               
chr21:16604068-16604361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 249
               

               
Conread position:
               
4-298
               

               
Cow position:
               
chr21:15543993-15544278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
201, 17
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chr21:17184164-17183822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 171
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chr21:17874944-17875290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
47, 297
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chr21:34663865-34663529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 17
               

               
Conread position:
               
4-337
               

               
Cow position:
               
chr21:3360770-3361110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 179
               

               
Conread position:
               
4-337
               

               
Cow position:
               
chr21:40589234-40589578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
48, 117
               

               
Conread position:
               
4-338
               

               
Cow position:
               
chr21:6713278-6713626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 303
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr21:10114087-10114436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
53, 95
               

               
Conread position:
               
4-543
               

               
Cow position:
               
chr21:5898162-5898715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 49
               

               
Conread position:
               
4-544
               

               
Cow position:
               
chr21:13047944-13048519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 297
               

               
Conread position:
               
4-555
               

               
Cow position:
               
chr21:641830-641253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 528
               

               
Conread position:
               
5-166
               

               
Cow position:
               
chr21:41738153-41737988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
5-172
               

               
Cow position:
               
chr21:27744274-27744098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
47, 83
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr21:37837833-37838101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
134, 45
               

               
Conread position:
               
5-338
               

               
Cow position:
               
chr21:37789757-37790102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
135, 310
               

               
Conread position:
               
5-544
               

               
Cow position:
               
chr21:10264280-10263719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 97
               

               
Conread position:
               
6-201
               

               
Cow position:
               
chr21:40291505-40291701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
57, 157
               

               
Conread position:
               
6-210
               

               
Cow position:
               
chr21:27677727-27677518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
46, 140
               

               
Conread position:
               
6-245
               

               
Cow position:
               
chr21:13589006-13588757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
47, 89
               

               
Conread position:
               
6-266
               

               
Cow position:
               
chr21:20165884-20165611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
58, 222
               

               
Conread position:
               
6-273
               

               
Cow position:
               
chr21:17983216-17982939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
133, 46
               

               
Conread position:
               
6-285
               

               
Cow position:
               
chr21:19059847-19060136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
47, 70
               

               
Conread position:
               
6-298
               

               
Cow position:
               
chr21:10978703-10979001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
46, 26
               

               
Conread position:
               
6-337
               

               
Cow position:
               
chr21:18155320-18155669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
6-337
               

               
Cow position:
               
chr21:32339501-32339837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 52
               

               
Conread position:
               
6-345
               

               
Cow position:
               
chr21:28028043-28027696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
47, 170
               

               
Conread position:
               
6-398
               

               
Cow position:
               
chr21:29979528-29979933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
74, 201
               

               
Conread position:
               
6-422
               

               
Cow position:
               
chr21:27521097-27521526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 130
               

               
Conread position:
               
6-563
               

               
Cow position:
               
chr21:938265-937710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 180
               

               
Conread position:
               
7-213
               

               
Cow position:
               
chr21:11353306-11353095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
45, 171
               

               
Conread position:
               
7-336
               

               
Cow position:
               
chr21:19195918-19196261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
45, 301
               

               
Conread position:
               
7-336
               

               
Cow position:
               
chr21:41579998-41579653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
45, 35
               

               
Conread position:
               
8-311
               

               
Cow position:
               
chr21:10743632-10743317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
8-337
               

               
Cow position:
               
chr21:11706522-11706847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
5, 138
               

               
Conread position:
               
8-483
               

               
Cow position:
               
chr21:44251598-44252090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 244
               

               
Conread position:
               
12-170
               

               
Cow position:
               
chr21:27409497-27409656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
52, 91
               

               
Conread position:
               
12-192
               

               
Cow position:
               
chr21:6154041-6153855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 157
               

               
Conread position:
               
12-216
               

               
Cow position:
               
chr21:39319169-39319379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
40, 166
               

               
Conread position:
               
12-337
               

               
Cow position:
               
chr21:6624397-6624059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
40, 70
               

               
Conread position:
               
12-345
               

               
Cow position:
               
chr21:13840566-13840214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
32, 107
               

               
Conread position:
               
13-238
               

               
Cow position:
               
chr21:36508470-36508243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
50, 129
               

               
Conread position:
               
13-268
               

               
Cow position:
               
chr21:36695850-36696122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
13-310
               

               
Cow position:
               
chr21:8349562-8349256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
192, 127
               

               
Conread position:
               
13-544
               

               
Cow position:
               
chr21:643560-643014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 31
               

               
Conread position:
               
15-202
               

               
Cow position:
               
chr21:18341457-18341262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 191
               

               
Conread position:
               
16-165
               

               
Cow position:
               
chr21:4269174-4269025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
123, 46
               

               
Conread position:
               
16-289
               

               
Cow position:
               
chr21:7377689-7377982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
16-332
               

               
Cow position:
               
chr21:29978529-29978850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 48
               

               
Conread position:
               
16-547
               

               
Cow position:
               
chr21:19615406-19614851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 16
               

               
Conread position:
               
17-268
               

               
Cow position:
               
chr21:3178081-3177833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
47, 21
               

               
Conread position:
               
20-544
               

               
Cow position:
               
chr21:34738805-34738276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 247
               

               
Conread position:
               
21-203
               

               
Cow position:
               
chr21:6735964-6736146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
118, 49
               

               
Conread position:
               
26-211
               

               
Cow position:
               
chr21:7768659-7768473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
26-336
               

               
Cow position:
               
chr21:17642765-17643065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
114, 64
               

               
Conread position:
               
26-337
               

               
Cow position:
               
chr21:9416474-9416147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 58
               

               
Conread position:
               
26-426
               

               
Cow position:
               
chr21:19259040-19258621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 125
               

               
Conread position:
               
35-291
               

               
Cow position:
               
chr21:976929-977199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
68, 256
               

               
Conread position:
               
37-317
               

               
Cow position:
               
chr21:16570108-16569822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
102, 29
               

               
Conread position:
               
37-336
               

               
Cow position:
               
chr21:9990724-9990418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 207
               

               
Conread position:
               
37-453
               

               
Cow position:
               
chr21:45329741-45330171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
101, 33
               

               
Conread position:
               
40-538
               

               
Cow position:
               
chr21:28924317-28923826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 233
               

               
Conread position:
               
41-238
               

               
Cow position:
               
chr21:31159603-31159405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
167, 112
               

               
Conread position:
               
41-302
               

               
Cow position:
               
chr21:10292699-10292426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
41-337
               

               
Cow position:
               
chr21:11360233-11359942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
12, 73
               

               
Conread position:
               
43-421
               

               
Cow position:
               
chr21:26245117-26244734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 7
               

               
Conread position:
               
44-494
               

               
Cow position:
               
chr21:33563207-33562741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 90
               

               
Conread position:
               
46-337
               

               
Cow position:
               
chr21:2927002-2927302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
23, 70
               

               
Conread position:
               
49-187
               

               
Cow position:
               
chr21:5406014-5405875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
49-210
               

               
Cow position:
               
chr21:44592012-44592173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
91, 27
               

               
Conread position:
               
49-216
               

               
Cow position:
               
chr21:9334686-9334518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
49-257
               

               
Cow position:
               
chr21:17063119-17062917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
206, 91
               

               
Conread position:
               
49-327
               

               
Cow position:
               
chr21:36910129-36909846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
90, 244
               

               
Conread position:
               
49-335
               

               
Cow position:
               
chr21:7581707-7582003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 255
               

               
Conread position:
               
49-335
               

               
Cow position:
               
chr21:27624893-27624612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
93, 10
               

               
Conread position:
               
49-336
               

               
Cow position:
               
chr21:10118764-10118459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
49-336
               

               
Cow position:
               
chr21:30250008-30250288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
170, 21
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chr21:3400634-3400933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
137, 187
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chr21:12749041-12749320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
90, 157
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chr21:22856416-22856119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
90, 114
               

               
Conread position:
               
49-382
               

               
Cow position:
               
chr21:42022471-42022149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
91, 36
               

               
Conread position:
               
49-411
               

               
Cow position:
               
chr21:13365540-13365151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
92, 112
               

               
Conread position:
               
49-425
               

               
Cow position:
               
chr21:29485176-29484780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
161, 99
               

               
Conread position:
               
49-470
               

               
Cow position:
               
chr21:23321880-23322330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 366
               

               
Conread position:
               
49-491
               

               
Cow position:
               
chr21:36795801-36795330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 248
               

               
Conread position:
               
50-165
               

               
Cow position:
               
chr21:28617985-28617869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
50-182
               

               
Cow position:
               
chr21:43265194-43265331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
50-217
               

               
Cow position:
               
chr21:30157609-30157777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
90, 32
               

               
Conread position:
               
50-283
               

               
Cow position:
               
chr21:19514051-19513818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
12, 65
               

               
Conread position:
               
50-285
               

               
Cow position:
               
chr21:41522218-41522456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
152, 95
               

               
Conread position:
               
50-314
               

               
Cow position:
               
chr21:28237511-28237790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
153, 117
               

               
Conread position:
               
50-330
               

               
Cow position:
               
chr21:19674003-19673712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
100, 255
               

               
Conread position:
               
50-334
               

               
Cow position:
               
chr21:18779779-18780066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
90, 124
               

               
Conread position:
               
50-334
               

               
Cow position:
               
chr21:30256077-30256366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
158, 86
               

               
Conread position:
               
50-336
               

               
Cow position:
               
chr21:33350938-33350648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
90, 197
               

               
Conread position:
               
50-345
               

               
Cow position:
               
chr21:10633444-10633748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
158, 46
               

               
Conread position:
               
50-398
               

               
Cow position:
               
chr21:18790369-18790733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 78
               

               
Conread position:
               
50-398
               

               
Cow position:
               
chr21:47763921-47764289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
93, 64
               

               
Conread position:
               
50-408
               

               
Cow position:
               
chr21:37344905-37345290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
89, 11
               

               
Conread position:
               
50-414
               

               
Cow position:
               
chr21:13164056-13163700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
89, 156
               

               
Conread position:
               
50-415
               

               
Cow position:
               
chr21:42841400-42841785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
91, 232
               

               
Conread position:
               
50-425
               

               
Cow position:
               
chr21:3818405-3818012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 57
               

               
Conread position:
               
50-457
               

               
Cow position:
               
chr21:27568977-27569400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
159, 10
               

               
Conread position:
               
50-535
               

               
Cow position:
               
chr21:13127902-13128410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 49
               

               
Conread position:
               
51-196
               

               
Cow position:
               
chr21:14228084-14228230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
51-213
               

               
Cow position:
               
chr21:8213085-8213245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
89, 98
               

               
Conread position:
               
51-262
               

               
Cow position:
               
chr21:10538059-10538276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
51-314
               

               
Cow position:
               
chr21:27429647-27429390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
157, 82
               

               
Conread position:
               
51-336
               

               
Cow position:
               
chr21:27810581-27810310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
185, 14
               

               
Conread position:
               
51-336
               

               
Cow position:
               
chr21:36297690-36297392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 38
               

               
Conread position:
               
51-338
               

               
Cow position:
               
chr21:42007266-42007564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
88, 121
               

               
Conread position:
               
51-420
               

               
Cow position:
               
chr21:13584865-13585257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 129
               

               
Conread position:
               
51-531
               

               
Cow position:
               
chr21:42905202-42905679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 104
               

               
Conread position:
               
52-173
               

               
Cow position:
               
chr21:42131160-42131282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
52-210
               

               
Cow position:
               
chr21:30119889-30119730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
52-232
               

               
Cow position:
               
chr21:17519216-17519036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
87, 164
               

               
Conread position:
               
52-238
               

               
Cow position:
               
chr21:21969006-21968818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 30
               

               
Conread position:
               
52-272
               

               
Cow position:
               
chr21:46132770-46132548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
17, 195
               

               
Conread position:
               
52-292
               

               
Cow position:
               
chr21:43259416-43259167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
12, 53
               

               
Conread position:
               
52-337
               

               
Cow position:
               
chr21:13089279-13089568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
159, 89
               

               
Conread position:
               
52-337
               

               
Cow position:
               
chr21:41598006-41597720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 154
               

               
Conread position:
               
52-342
               

               
Cow position:
               
chr21:21169301-21169595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 98
               

               
Conread position:
               
52-425
               

               
Cow position:
               
chr21:24094568-24094948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 23
               

               
Conread position:
               
52-443
               

               
Cow position:
               
chr21:40168431-40168830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 94
               

               
Conread position:
               
52-512
               

               
Cow position:
               
chr21:25127799-25127319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 351
               

               
Conread position:
               
52-530
               

               
Cow position:
               
chr21:42384704-42384199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 251
               

               
Conread position:
               
52-539
               

               
Cow position:
               
chr21:17455577-17455085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
95, 18
               

               
Conread position:
               
52-544
               

               
Cow position:
               
chr21:46912740-46912222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 175
               

               
Conread position:
               
53-210
               

               
Cow position:
               
chr21:46470377-46470222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
53-336
               

               
Cow position:
               
chr21:30236651-30236915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
183, 37
               

               
Conread position:
               
54-216
               

               
Cow position:
               
chr21:7584043-7583880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
54-269
               

               
Cow position:
               
chr21:13395789-13395565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
80, 11
               

               
Conread position:
               
54-347
               

               
Cow position:
               
chr21:17009173-17008872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
86, 35
               

               
Conread position:
               
54-536
               

               
Cow position:
               
chr21:27341402-27341906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 102
               

               
Conread position:
               
55-199
               

               
Cow position:
               
chr21:30980386-30980530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
55-200
               

               
Cow position:
               
chr21:34209889-34210034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
83, 70
               

               
Conread position:
               
55-543
               

               
Cow position:
               
chr21:28989804-28989296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
85, 15
               

               
Conread position:
               
56-203
               

               
Cow position:
               
chr21:713134-712985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
56-338
               

               
Cow position:
               
chr21:33910-33621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 224
               

               
Conread position:
               
56-544
               

               
Cow position:
               
chr21:10151996-10151485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 370
               

               
Conread position:
               
58-174
               

               
Cow position:
               
chr21:37361053-37361170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
58-335
               

               
Cow position:
               
chr21:10823748-10823460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 138
               

               
Conread position:
               
58-517
               

               
Cow position:
               
chr21:32237469-32237004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 88
               

               
Conread position:
               
58-544
               

               
Cow position:
               
chr21:15976821-15976318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 62
               

               
Conread position:
               
58-544
               

               
Cow position:
               
chr21:26647827-26648326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 32
               

               
Conread position:
               
58-544
               

               
Cow position:
               
chr21:33264033-33263528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 192
               

               
Conread position:
               
58-555
               

               
Cow position:
               
chr21:45473568-45474089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 417
               

               
Conread position:
               
59-337
               

               
Cow position:
               
chr21:24642700-24642419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 48
               

               
Conread position:
               
61-173
               

               
Cow position:
               
chr21:26658796-26658909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
61-345
               

               
Cow position:
               
chr21:1059262-1058969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
33, 90
               

               
Conread position:
               
62-336
               

               
Cow position:
               
chr21:28191217-28190934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
79, 105
               

               
Conread position:
               
62-342
               

               
Cow position:
               
chr21:34740030-34739742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 135
               

               
Conread position:
               
63-336
               

               
Cow position:
               
chr21:20260136-20260419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 17
               

               
Conread position:
               
63-555
               

               
Cow position:
               
chr21:5153804-5153283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 19
               

               
Conread position:
               
64-186
               

               
Cow position:
               
chr21:8686960-8687083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
65-210
               

               
Cow position:
               
chr21:26838053-26837915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
65-272
               

               
Cow position:
               
chr21:42209447-42209667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
66-201
               

               
Cow position:
               
chr21:22939951-22939812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
66-389
               

               
Cow position:
               
chr21:10001256-10000912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 78
               

               
Conread position:
               
66-531
               

               
Cow position:
               
chr21:396048-395568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 95
               

               
Conread position:
               
67-337
               

               
Cow position:
               
chr21:21077780-21077502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
149, 73
               

               
Conread position:
               
68-332
               

               
Cow position:
               
chr21:25383205-25382922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
75, 250
               

               
Conread position:
               
70-248
               

               
Cow position:
               
chr21:6388176-6387990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
70-424
               

               
Cow position:
               
chr21:45356010-45355633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 230
               

               
Conread position:
               
74-203
               

               
Cow position:
               
chr21:12207629-12207759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
78-211
               

               
Cow position:
               
chr21:8231509-8231644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
62, 46
               

               
Conread position:
               
80-531
               

               
Cow position:
               
chr21:45915551-45916014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 68
               

               
Conread position:
               
81-544
               

               
Cow position:
               
chr21:46972984-46973457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 97
               

               
Conread position:
               
82-206
               

               
Cow position:
               
chr21:35647663-35647788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
82-234
               

               
Cow position:
               
chr21:23460298-23460146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
123, 59
               

               
Conread position:
               
82-398
               

               
Cow position:
               
chr21:15911564-15911223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
123, 8
               

               
Conread position:
               
82-411
               

               
Cow position:
               
chr21:33791217-33791558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
154, 16
               

               
Conread position:
               
82-424
               

               
Cow position:
               
chr21:28955666-28955319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
126, 57
               

               
Conread position:
               
82-551
               

               
Cow position:
               
chr21:30990122-30990598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 95
               

               
Conread position:
               
83-351
               

               
Cow position:
               
chr21:47363570-47363858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
58, 259
               

               
Conread position:
               
83-532
               

               
Cow position:
               
chr21:18850059-18850537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
8, 74
               

               
Conread position:
               
84-335
               

               
Cow position:
               
chr21:36789959-36789700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
22, 201
               

               
Conread position:
               
90-332
               

               
Cow position:
               
chr21:5567143-5566901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
50, 60
               

               
Conread position:
               
90-337
               

               
Cow position:
               
chr21:20418525-20418784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 216
               

               
Conread position:
               
92-337
               

               
Cow position:
               
chr21:13738707-13738469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
118, 15
               

               
Conread position:
               
92-452
               

               
Cow position:
               
chr21:41878624-41878245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
48, 28
               

               
Conread position:
               
92-544
               

               
Cow position:
               
chr21:39401745-39401277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 37
               

               
Conread position:
               
96-334
               

               
Cow position:
               
chr21:1591705-1591454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
43, 209
               

               
Conread position:
               
96-337
               

               
Cow position:
               
chr21:24888149-24887913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
44, 24
               

               
Conread position:
               
96-346
               

               
Cow position:
               
chr21:45330456-45330711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 54
               

               
Conread position:
               
97-339
               

               
Cow position:
               
chr21:2260216-2260459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
46, 37
               

               
Conread position:
               
97-495
               

               
Cow position:
               
chr21:16187657-16188069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
44, 207
               

               
Conread position:
               
97-546
               

               
Cow position:
               
chr21:35897476-35897947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 212
               

               
Conread position:
               
98-497
               

               
Cow position:
               
chr21:30606937-30607379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
98-555
               

               
Cow position:
               
chr21:34390826-34391300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 205
               

               
Conread position:
               
99-508
               

               
Cow position:
               
chr21:43357108-43357548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 68
               

               
Conread position:
               
100-336
               

               
Cow position:
               
chr21:11251016-11250771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
40, 50
               

               
Conread position:
               
115-337
               

               
Cow position:
               
chr21:5636588-5636817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
30, 186
               

               
Conread position:
               
117-518
               

               
Cow position:
               
chr21:33997097-33997522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 186
               

               
Conread position:
               
118-543
               

               
Cow position:
               
chr21:36162830-36163284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 441
               

               
Conread position:
               
121-315
               

               
Cow position:
               
chr21:33359917-33360111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
87, 13
               

               
Conread position:
               
121-335
               

               
Cow position:
               
chr21:38664765-38664541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 169
               

               
Conread position:
               
121-544
               

               
Cow position:
               
chr21:38867462-38867890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
19, 85
               

               
Conread position:
               
122-425
               

               
Cow position:
               
chr21:8452010-8451719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
18, 54
               

               
Conread position:
               
129-319
               

               
Cow position:
               
chr21:37014288-37014484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
11, 171
               

               
Conread position:
               
129-544
               

               
Cow position:
               
chr21:20925389-20925828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 7
               

               
Conread position:
               
130-544
               

               
Cow position:
               
chr21:24222420-24222864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 174
               

               
Conread position:
               
139-332
               

               
Cow position:
               
chr21:8527377-8527571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
69, 105
               

               
Conread position:
               
139-540
               

               
Cow position:
               
chr21:28882245-28881830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 10
               

               
Conread position:
               
142-337
               

               
Cow position:
               
chr21:45439132-45439348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
142-547
               

               
Cow position:
               
chr21:32536081-32535650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 156
               

               
Conread position:
               
143-422
               

               
Cow position:
               
chr21:3380975-3381282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
64, 166
               

               
Conread position:
               
144-531
               

               
Cow position:
               
chr21:4189943-4189522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
149-337
               

               
Cow position:
               
chr21:6102164-6102355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
59, 120
               

               
Conread position:
               
149-544
               

               
Cow position:
               
chr21:3813386-3813790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 90
               

               
Conread position:
               
150-335
               

               
Cow position:
               
chr21:5985222-5985415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
154-535
               

               
Cow position:
               
chr21:47802167-47802576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 81
               

               
Conread position:
               
156-335
               

               
Cow position:
               
chr21:39450071-39450262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
156-544
               

               
Cow position:
               
chr21:5454901-5455309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 244
               

               
Conread position:
               
156-558
               

               
Cow position:
               
chr21:17414459-17414857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
50, 123
               

               
Conread position:
               
159-366
               

               
Cow position:
               
chr21:29224773-29224990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 192
               

               
Conread position:
               
160-544
               

               
Cow position:
               
chr21:13898274-13897870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 145
               

               
Conread position:
               
162-544
               

               
Cow position:
               
chr21:1464314-1463910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 265
               

               
Conread position:
               
164-336
               

               
Cow position:
               
chr21:24765364-24765194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
71, 17
               

               
Conread position:
               
166-336
               

               
Cow position:
               
chr21:27743829-27743647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
41, 164
               

               
Conread position:
               
166-544
               

               
Cow position:
               
chr21:28617671-28617279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
41, 273
               

               
Conread position:
               
175-345
               

               
Cow position:
               
chr21:9979899-9980071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
38, 96
               

               
Conread position:
               
180-332
               

               
Cow position:
               
chr21:2785710-2785870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 122
               

               
Conread position:
               
200-555
               

               
Cow position:
               
chr21:911927-912295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
36, 96
               

               
Conread position:
               
203-538
               

               
Cow position:
               
chr21:18495006-18494661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
206-425
               

               
Cow position:
               
chr21:37361442-37361678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
30, 84
               

               
Conread position:
               
208-421
               

               
Cow position:
               
chr21:31676529-31676298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
208-544
               

               
Cow position:
               
chr21:48484415-48484763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 193
               

               
Conread position:
               
211-544
               

               
Cow position:
               
chr21:42190146-42190481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 185
               

               
Conread position:
               
212-552
               

               
Cow position:
               
chr21:8985574-8985218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 84
               

               
Conread position:
               
215-337
               

               
Cow position:
               
chr21:9998692-9998818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
223-544
               

               
Cow position:
               
chr21:33419706-33420039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 87
               

               
Conread position:
               
243-544
               

               
Cow position:
               
chr21:20575471-20575778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
103, 25
               

               
Conread position:
               
294-525
               

               
Cow position:
               
chr21:29954493-29954731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
54, 102
               
Show alignments to all cow chromosomes.