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Cow genome map

           
Conread name:
           
Pig1-107L24
        

               
Conread position:
               
1-161
               

               
Cow position:
               
chr27:17908490-17908324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
51, 121
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr27:19576551-19576379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chr27:24755763-24755939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
2-253
               

               
Cow position:
               
chr27:14303512-14303769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
65, 149
               

               
Conread position:
               
2-342
               

               
Cow position:
               
chr27:26481425-26481092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 132
               

               
Conread position:
               
2-424
               

               
Cow position:
               
chr27:12596554-12596980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 64
               

               
Conread position:
               
2-478
               

               
Cow position:
               
chr27:6541408-6541893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 5
               

               
Conread position:
               
3-139
               

               
Cow position:
               
chr27:21101519-21101378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
49, 79
               

               
Conread position:
               
3-150
               

               
Cow position:
               
chr27:18873826-18873972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
136, 7
               

               
Conread position:
               
3-157
               

               
Cow position:
               
chr27:23232685-23232847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chr27:23177539-23177380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
3-161
               

               
Cow position:
               
chr27:22497801-22497957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
110, 67
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr27:9504326-9504491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr27:21951207-21951039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chr27:30444901-30444738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
136, 33
               

               
Conread position:
               
3-168
               

               
Cow position:
               
chr27:11208784-11208612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-169
               

               
Cow position:
               
chr27:26314352-26314180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 92
               

               
Conread position:
               
3-169
               

               
Cow position:
               
chr27:26909815-26909648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
3-169
               

               
Cow position:
               
chr27:31157583-31157755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
59, 92
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr27:31248833-31248669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr27:29249359-29249539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chr27:20484506-20484681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chr27:22792612-22792783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
136, 60
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chr27:27450110-27449934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr27:4414043-4413866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr27:5539919-5539743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
35, 22
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr27:13801578-13801761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 162
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr27:28015962-28015783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
3-179
               

               
Cow position:
               
chr27:232324-232507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr27:11349058-11349231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
3-184
               

               
Cow position:
               
chr27:26400944-26400763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
136, 50
               

               
Conread position:
               
3-186
               

               
Cow position:
               
chr27:16246580-16246767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
136, 54
               

               
Conread position:
               
3-190
               

               
Cow position:
               
chr27:20548583-20548775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
3-193
               

               
Cow position:
               
chr27:27648542-27648350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chr27:6319696-6319892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
66, 49
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr27:24731265-24731064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
49, 113
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr27:29388445-29388648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr27:10404344-10404139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
50, 159
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr27:29319178-29319388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 89
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr27:16512394-16512187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
66, 40
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr27:18435357-18435149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
107, 114
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chr27:27740520-27740306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 120
               

               
Conread position:
               
3-212
               

               
Cow position:
               
chr27:26565568-26565776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 111
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr27:18882430-18882641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
136, 16
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr27:26437347-26437129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
3-233
               

               
Cow position:
               
chr27:11982875-11982635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 122
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chr27:19932839-19933082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chr27:13255020-13254785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
65, 24
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chr27:31386857-31386607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
64, 206
               

               
Conread position:
               
3-261
               

               
Cow position:
               
chr27:23560256-23559987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
3-261
               

               
Cow position:
               
chr27:26852809-26852547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
45, 137
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr27:2644325-2644044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-265
               

               
Cow position:
               
chr27:15865383-15865660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr27:27405296-27405007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-282
               

               
Cow position:
               
chr27:23452236-23452525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
49, 157
               

               
Conread position:
               
3-305
               

               
Cow position:
               
chr27:22489045-22489365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
49, 294
               

               
Conread position:
               
3-307
               

               
Cow position:
               
chr27:6924855-6925179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
61, 317
               

               
Conread position:
               
3-310
               

               
Cow position:
               
chr27:18646376-18646053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
136, 65
               

               
Conread position:
               
3-311
               

               
Cow position:
               
chr27:26188600-26188915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
49, 158
               

               
Conread position:
               
3-314
               

               
Cow position:
               
chr27:22560053-22559725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
39, 142
               

               
Conread position:
               
3-317
               

               
Cow position:
               
chr27:23735742-23736061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
60, 39
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr27:4858846-4858540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
138, 50
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr27:21990916-21991261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
49, 93
               

               
Conread position:
               
3-325
               

               
Cow position:
               
chr27:23594092-23594423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
27, 300
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr27:26226515-26226178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 94
               

               
Conread position:
               
3-333
               

               
Cow position:
               
chr27:19660701-19661055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chr27:19500463-19500118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
49, 305
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chr27:20101140-20101484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 43
               

               
Conread position:
               
3-335
               

               
Cow position:
               
chr27:23554556-23554206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 131
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr27:426743-427087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
68, 150
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr27:7412167-7412497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
59, 199
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr27:15669001-15668652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr27:16786604-16786941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
49, 80
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr27:22547615-22547290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
232, 67
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr27:10307530-10307184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr27:10979633-10979979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
49, 282
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr27:16705026-16705366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 246
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr27:18558131-18558479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 149
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr27:22035598-22035258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
136, 68
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr27:22439910-22440255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
42, 96
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr27:26428355-26428013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 89
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr27:26490132-26489786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 297
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr27:28922122-28921781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 183
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr27:28932029-28931672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 162
               

               
Conread position:
               
3-338
               

               
Cow position:
               
chr27:27442387-27442050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
136, 67
               

               
Conread position:
               
3-339
               

               
Cow position:
               
chr27:30872284-30871938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 172
               

               
Conread position:
               
3-344
               

               
Cow position:
               
chr27:1637153-1636819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 57
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr27:10992147-10992481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
137, 33
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr27:11480865-11480502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr27:15409252-15408916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr27:23890706-23891065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 333
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr27:27438735-27438377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr27:13875506-13875858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
56, 109
               

               
Conread position:
               
3-347
               

               
Cow position:
               
chr27:7615296-7614959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
199, 48
               

               
Conread position:
               
3-398
               

               
Cow position:
               
chr27:20354373-20354777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 112
               

               
Conread position:
               
3-398
               

               
Cow position:
               
chr27:20553003-20552572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
47, 21
               

               
Conread position:
               
3-398
               

               
Cow position:
               
chr27:30914780-30915199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 158
               

               
Conread position:
               
3-422
               

               
Cow position:
               
chr27:2592310-2592762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 315
               

               
Conread position:
               
3-425
               

               
Cow position:
               
chr27:28002030-28001599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 54
               

               
Conread position:
               
3-443
               

               
Cow position:
               
chr27:30890074-30890528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
136, 62
               

               
Conread position:
               
3-446
               

               
Cow position:
               
chr27:28518066-28518530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 249
               

               
Conread position:
               
3-452
               

               
Cow position:
               
chr27:12515967-12516448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 42
               

               
Conread position:
               
3-458
               

               
Cow position:
               
chr27:26509383-26508904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 119
               

               
Conread position:
               
3-502
               

               
Cow position:
               
chr27:20283417-20283924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 52
               

               
Conread position:
               
3-531
               

               
Cow position:
               
chr27:27020322-27019773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 27
               

               
Conread position:
               
3-536
               

               
Cow position:
               
chr27:7959058-7958500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 95
               

               
Conread position:
               
3-538
               

               
Cow position:
               
chr27:8630100-8629537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 39
               

               
Conread position:
               
3-539
               

               
Cow position:
               
chr27:21978370-21977799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 94
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr27:15315296-15315833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 17
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr27:15867166-15867730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 423
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr27:17397678-17397111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 304
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr27:19387794-19388360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 18
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr27:24446365-24445813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 62
               

               
Conread position:
               
3-555
               

               
Cow position:
               
chr27:11435554-11434977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 109
               

               
Conread position:
               
3-555
               

               
Cow position:
               
chr27:23128238-23128806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 114
               

               
Conread position:
               
3-561
               

               
Cow position:
               
chr27:25809743-25809163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 141
               

               
Conread position:
               
3-563
               

               
Cow position:
               
chr27:1353353-1353957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 415
               

               
Conread position:
               
3-563
               

               
Cow position:
               
chr27:20637285-20636714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 88
               

               
Conread position:
               
4-146
               

               
Cow position:
               
chr27:16505132-16504991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
4-163
               

               
Cow position:
               
chr27:22254564-22254732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 158
               

               
Conread position:
               
4-193
               

               
Cow position:
               
chr27:6162629-6162443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
135, 61
               

               
Conread position:
               
4-193
               

               
Cow position:
               
chr27:11133862-11134051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
48, 177
               

               
Conread position:
               
4-202
               

               
Cow position:
               
chr27:26173272-26173473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
59, 132
               

               
Conread position:
               
4-254
               

               
Cow position:
               
chr27:11561549-11561811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
48, 10
               

               
Conread position:
               
4-268
               

               
Cow position:
               
chr27:23859937-23860221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
48, 104
               

               
Conread position:
               
4-312
               

               
Cow position:
               
chr27:20078639-20078961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 142
               

               
Conread position:
               
4-327
               

               
Cow position:
               
chr27:29380635-29380967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
135, 39
               

               
Conread position:
               
4-333
               

               
Cow position:
               
chr27:11159789-11160111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
136, 60
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chr27:2957191-2957519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 66
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr27:16103585-16103931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
59, 114
               

               
Conread position:
               
4-398
               

               
Cow position:
               
chr27:27003485-27003084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
48, 31
               

               
Conread position:
               
4-414
               

               
Cow position:
               
chr27:26238798-26239237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
34, 24
               

               
Conread position:
               
4-424
               

               
Cow position:
               
chr27:30764807-30765255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 112
               

               
Conread position:
               
4-425
               

               
Cow position:
               
chr27:13639213-13638768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
44, 209
               

               
Conread position:
               
5-165
               

               
Cow position:
               
chr27:23060341-23060174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
5-172
               

               
Cow position:
               
chr27:20048412-20048580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
5-229
               

               
Cow position:
               
chr27:30455768-30455998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr27:13318202-13317913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
5-291
               

               
Cow position:
               
chr27:16965350-16965648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
48, 174
               

               
Conread position:
               
5-312
               

               
Cow position:
               
chr27:28896653-28896969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
47, 158
               

               
Conread position:
               
5-345
               

               
Cow position:
               
chr27:22735819-22735474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
47, 182
               

               
Conread position:
               
5-417
               

               
Cow position:
               
chr27:26163179-26163594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
47, 181
               

               
Conread position:
               
5-482
               

               
Cow position:
               
chr27:7935383-7934883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 480
               

               
Conread position:
               
5-518
               

               
Cow position:
               
chr27:8062576-8062045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 400
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr27:6499834-6500179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
6-368
               

               
Cow position:
               
chr27:20749226-20748858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
77, 59
               

               
Conread position:
               
6-528
               

               
Cow position:
               
chr27:30868975-30868413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 294
               

               
Conread position:
               
6-555
               

               
Cow position:
               
chr27:15870935-15871516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 89
               

               
Conread position:
               
8-178
               

               
Cow position:
               
chr27:26236106-26236278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
44, 108
               

               
Conread position:
               
8-190
               

               
Cow position:
               
chr27:19557170-19557349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
131, 68
               

               
Conread position:
               
8-195
               

               
Cow position:
               
chr27:29613714-29613519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
8-217
               

               
Cow position:
               
chr27:6241415-6241201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
8-223
               

               
Cow position:
               
chr27:26883482-26883257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 152
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chr27:20514598-20514889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
44, 148
               

               
Conread position:
               
9-203
               

               
Cow position:
               
chr27:15332509-15332318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
120, 55
               

               
Conread position:
               
9-203
               

               
Cow position:
               
chr27:24709333-24709530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
43, 175
               

               
Conread position:
               
9-216
               

               
Cow position:
               
chr27:28478363-28478572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
130, 52
               

               
Conread position:
               
11-544
               

               
Cow position:
               
chr27:15925123-15925679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 427
               

               
Conread position:
               
12-248
               

               
Cow position:
               
chr27:6290253-6290502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
13-177
               

               
Cow position:
               
chr27:31498563-31498730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 83
               

               
Conread position:
               
13-337
               

               
Cow position:
               
chr27:13251807-13252125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
99, 53
               

               
Conread position:
               
13-421
               

               
Cow position:
               
chr27:26218504-26218915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 22
               

               
Conread position:
               
14-337
               

               
Cow position:
               
chr27:19896547-19896872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
126, 62
               

               
Conread position:
               
14-544
               

               
Cow position:
               
chr27:17472602-17473165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 23
               

               
Conread position:
               
15-165
               

               
Cow position:
               
chr27:18912736-18912584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
16-178
               

               
Cow position:
               
chr27:1184389-1184225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
16-538
               

               
Cow position:
               
chr27:17646371-17645861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 49
               

               
Conread position:
               
17-278
               

               
Cow position:
               
chr27:29593844-29593571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
50, 138
               

               
Conread position:
               
17-544
               

               
Cow position:
               
chr27:20828920-20828363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 8
               

               
Conread position:
               
18-337
               

               
Cow position:
               
chr27:8168638-8168310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 31
               

               
Conread position:
               
19-237
               

               
Cow position:
               
chr27:16231151-16230919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
33, 212
               

               
Conread position:
               
19-332
               

               
Cow position:
               
chr27:20045680-20046000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 127
               

               
Conread position:
               
19-544
               

               
Cow position:
               
chr27:1768833-1768291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 150
               

               
Conread position:
               
21-280
               

               
Cow position:
               
chr27:4155794-4156066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
26-195
               

               
Cow position:
               
chr27:13940758-13940588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 17
               

               
Conread position:
               
38-253
               

               
Cow position:
               
chr27:10653496-10653721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
38-278
               

               
Cow position:
               
chr27:28260726-28260477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
27, 121
               

               
Conread position:
               
41-158
               

               
Cow position:
               
chr27:23495894-23495777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
42-332
               

               
Cow position:
               
chr27:23545515-23545206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
98, 198
               

               
Conread position:
               
42-451
               

               
Cow position:
               
chr27:1291031-1290618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
98, 23
               

               
Conread position:
               
48-544
               

               
Cow position:
               
chr27:24227977-24227450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 5
               

               
Conread position:
               
49-203
               

               
Cow position:
               
chr27:1789316-1789162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
90, 129
               

               
Conread position:
               
49-203
               

               
Cow position:
               
chr27:23147988-23148143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
49-203
               

               
Cow position:
               
chr27:29991625-29991470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
49-210
               

               
Cow position:
               
chr27:20336924-20337080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
90, 109
               

               
Conread position:
               
49-219
               

               
Cow position:
               
chr27:23863412-23863583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
89, 107
               

               
Conread position:
               
49-252
               

               
Cow position:
               
chr27:18923010-18922796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
76, 67
               

               
Conread position:
               
49-269
               

               
Cow position:
               
chr27:29693300-29693520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
90, 153
               

               
Conread position:
               
49-314
               

               
Cow position:
               
chr27:29236386-29236677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
90, 271
               

               
Conread position:
               
49-339
               

               
Cow position:
               
chr27:28271328-28271025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
49-452
               

               
Cow position:
               
chr27:24331543-24331980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
91, 122
               

               
Conread position:
               
49-467
               

               
Cow position:
               
chr27:6550286-6550717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 106
               

               
Conread position:
               
49-509
               

               
Cow position:
               
chr27:20758207-20757750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
158, 58
               

               
Conread position:
               
49-542
               

               
Cow position:
               
chr27:4386239-4385727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 464
               

               
Conread position:
               
50-170
               

               
Cow position:
               
chr27:18752681-18752800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 64
               

               
Conread position:
               
50-177
               

               
Cow position:
               
chr27:17918894-17918766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
50-199
               

               
Cow position:
               
chr27:30489587-30489437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
50-217
               

               
Cow position:
               
chr27:30908495-30908661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 73
               

               
Conread position:
               
50-238
               

               
Cow position:
               
chr27:20584630-20584439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
158, 40
               

               
Conread position:
               
50-251
               

               
Cow position:
               
chr27:15343454-15343247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
35, 93
               

               
Conread position:
               
50-257
               

               
Cow position:
               
chr27:17918490-17918274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
50-278
               

               
Cow position:
               
chr27:31018002-31017772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
90, 130
               

               
Conread position:
               
50-291
               

               
Cow position:
               
chr27:16088625-16088884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 47
               

               
Conread position:
               
50-337
               

               
Cow position:
               
chr27:27270718-27270423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 25
               

               
Conread position:
               
50-337
               

               
Cow position:
               
chr27:30988621-30988913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
158, 252
               

               
Conread position:
               
50-346
               

               
Cow position:
               
chr27:15642998-15643299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 74
               

               
Conread position:
               
50-452
               

               
Cow position:
               
chr27:2930765-2930345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 165
               

               
Conread position:
               
50-535
               

               
Cow position:
               
chr27:8942865-8942358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 6
               

               
Conread position:
               
51-224
               

               
Cow position:
               
chr27:27673191-27673017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
88, 107
               

               
Conread position:
               
52-169
               

               
Cow position:
               
chr27:30665251-30665133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
52-178
               

               
Cow position:
               
chr27:27747640-27747513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
52-203
               

               
Cow position:
               
chr27:14957900-14957752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
87, 30
               

               
Conread position:
               
52-251
               

               
Cow position:
               
chr27:24303772-24303970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
87, 136
               

               
Conread position:
               
52-261
               

               
Cow position:
               
chr27:5553295-5553510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
87, 106
               

               
Conread position:
               
52-278
               

               
Cow position:
               
chr27:7974003-7974236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
52-333
               

               
Cow position:
               
chr27:30261067-30260780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
87, 251
               

               
Conread position:
               
52-433
               

               
Cow position:
               
chr27:25783453-25783834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
156, 13
               

               
Conread position:
               
52-434
               

               
Cow position:
               
chr27:26643515-26643906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
147, 70
               

               
Conread position:
               
52-453
               

               
Cow position:
               
chr27:31147862-31147421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
19, 227
               

               
Conread position:
               
52-513
               

               
Cow position:
               
chr27:29831876-29831376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 369
               

               
Conread position:
               
52-521
               

               
Cow position:
               
chr27:30177726-30177250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 103
               

               
Conread position:
               
52-544
               

               
Cow position:
               
chr27:15866047-15866564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 24
               

               
Conread position:
               
52-551
               

               
Cow position:
               
chr27:22603011-22603513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 97
               

               
Conread position:
               
53-203
               

               
Cow position:
               
chr27:6302641-6302491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
90, 76
               

               
Conread position:
               
53-203
               

               
Cow position:
               
chr27:23895251-23895397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
85, 105
               

               
Conread position:
               
53-262
               

               
Cow position:
               
chr27:22423343-22423554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
87, 22
               

               
Conread position:
               
53-397
               

               
Cow position:
               
chr27:25276970-25277332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 22
               

               
Conread position:
               
53-492
               

               
Cow position:
               
chr27:26920086-26919622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 223
               

               
Conread position:
               
53-531
               

               
Cow position:
               
chr27:15271746-15272236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 160
               

               
Conread position:
               
54-280
               

               
Cow position:
               
chr27:20812732-20812969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
54-555
               

               
Cow position:
               
chr27:24550582-24550072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
55, 73
               

               
Conread position:
               
55-319
               

               
Cow position:
               
chr27:24371071-24371336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
83, 64
               

               
Conread position:
               
55-412
               

               
Cow position:
               
chr27:30359235-30359606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 193
               

               
Conread position:
               
58-281
               

               
Cow position:
               
chr27:28035016-28034797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
81, 58
               

               
Conread position:
               
58-336
               

               
Cow position:
               
chr27:27641179-27640877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 33
               

               
Conread position:
               
58-391
               

               
Cow position:
               
chr27:20037286-20036938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
10, 56
               

               
Conread position:
               
58-414
               

               
Cow position:
               
chr27:22454945-22454565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 243
               

               
Conread position:
               
58-489
               

               
Cow position:
               
chr27:19589304-19589763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
78, 119
               

               
Conread position:
               
58-544
               

               
Cow position:
               
chr27:27064608-27064101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 229
               

               
Conread position:
               
59-344
               

               
Cow position:
               
chr27:19546678-19546381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
149, 16
               

               
Conread position:
               
61-255
               

               
Cow position:
               
chr27:21453260-21453058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
29, 19
               

               
Conread position:
               
61-298
               

               
Cow position:
               
chr27:26347777-26347538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
79, 33
               

               
Conread position:
               
62-341
               

               
Cow position:
               
chr27:19648108-19647816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
14, 113
               

               
Conread position:
               
63-337
               

               
Cow position:
               
chr27:28018179-28018452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
63-496
               

               
Cow position:
               
chr27:26413418-26412963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 241
               

               
Conread position:
               
65-313
               

               
Cow position:
               
chr27:8263500-8263239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
66-187
               

               
Cow position:
               
chr27:27255827-27255949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
66-337
               

               
Cow position:
               
chr27:20901400-20901681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 20
               

               
Conread position:
               
67-337
               

               
Cow position:
               
chr27:23882527-23882258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
72, 79
               

               
Conread position:
               
67-538
               

               
Cow position:
               
chr27:536305-536790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
70-341
               

               
Cow position:
               
chr27:674187-673922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
73, 124
               

               
Conread position:
               
72-349
               

               
Cow position:
               
chr27:28245648-28245932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
68, 239
               

               
Conread position:
               
72-546
               

               
Cow position:
               
chr27:12278399-12277935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
68, 18
               

               
Conread position:
               
75-544
               

               
Cow position:
               
chr27:8353327-8353807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
126, 70
               

               
Conread position:
               
81-543
               

               
Cow position:
               
chr27:9169786-9169336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
83-323
               

               
Cow position:
               
chr27:715357-715608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
57, 101
               

               
Conread position:
               
83-418
               

               
Cow position:
               
chr27:30354488-30354128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
57, 205
               

               
Conread position:
               
90-337
               

               
Cow position:
               
chr27:1058812-1058564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
90-345
               

               
Cow position:
               
chr27:18593136-18593394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
51, 60
               

               
Conread position:
               
96-289
               

               
Cow position:
               
chr27:21975922-21976123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
104-337
               

               
Cow position:
               
chr27:12429285-12429522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
111-544
               

               
Cow position:
               
chr27:25379872-25380340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 197
               

               
Conread position:
               
112-278
               

               
Cow position:
               
chr27:20056083-20055908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
112-332
               

               
Cow position:
               
chr27:30672673-30672449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
28, 179
               

               
Conread position:
               
114-323
               

               
Cow position:
               
chr27:20247917-20247694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
29, 60
               

               
Conread position:
               
117-537
               

               
Cow position:
               
chr27:815252-815701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 190
               

               
Conread position:
               
117-544
               

               
Cow position:
               
chr27:24999850-24999393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 330
               

               
Conread position:
               
126-337
               

               
Cow position:
               
chr27:21351122-21350900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
71, 180
               

               
Conread position:
               
149-544
               

               
Cow position:
               
chr27:11412651-11413058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
153-344
               

               
Cow position:
               
chr27:6350913-6350702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
154-544
               

               
Cow position:
               
chr27:27040530-27040940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
54, 293
               

               
Conread position:
               
155-337
               

               
Cow position:
               
chr27:7538148-7537957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
155-345
               

               
Cow position:
               
chr27:21569911-21569716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
52, 71
               

               
Conread position:
               
155-346
               

               
Cow position:
               
chr27:6522973-6523169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
62, 51
               

               
Conread position:
               
156-345
               

               
Cow position:
               
chr27:29283478-29283281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
52, 147
               

               
Conread position:
               
157-484
               

               
Cow position:
               
chr27:30362177-30362526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 127
               

               
Conread position:
               
160-326
               

               
Cow position:
               
chr27:20570053-20570230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
160-337
               

               
Cow position:
               
chr27:14902719-14902533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
48, 144
               

               
Conread position:
               
162-440
               

               
Cow position:
               
chr27:27259550-27259843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
164-337
               

               
Cow position:
               
chr27:6058441-6058618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
165-543
               

               
Cow position:
               
chr27:8292062-8291669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 165
               

               
Conread position:
               
166-337
               

               
Cow position:
               
chr27:22268441-22268620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 136
               

               
Conread position:
               
166-544
               

               
Cow position:
               
chr27:16237849-16238239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 97
               

               
Conread position:
               
169-337
               

               
Cow position:
               
chr27:4011622-4011798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
175-313
               

               
Cow position:
               
chr27:4482907-4482762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 71
               

               
Conread position:
               
209-458
               

               
Cow position:
               
chr27:16263330-16263590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
83, 43
               

               
Conread position:
               
243-543
               

               
Cow position:
               
chr27:30676934-30677241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
36, 13
               
Show alignments to all cow chromosomes.