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Cow genome map

           
Conread name:
           
Pig1-107L24
        

               
Conread position:
               
1-165
               

               
Cow position:
               
chr3:80910757-80910588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 6
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr3:11640897-11640668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-336
               

               
Cow position:
               
chr3:2506316-2506662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 6
               

               
Conread position:
               
1-337
               

               
Cow position:
               
chr3:20841719-20842042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 57
               

               
Conread position:
               
2-161
               

               
Cow position:
               
chr3:25060492-25060324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
2-201
               

               
Cow position:
               
chr3:79272416-79272616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
66, 75
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chr3:79271549-79271757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
31, 24
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chr3:53904611-53904379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
2-293
               

               
Cow position:
               
chr3:59040730-59040422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
50, 80
               

               
Conread position:
               
2-310
               

               
Cow position:
               
chr3:9663009-9663331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 306
               

               
Conread position:
               
2-336
               

               
Cow position:
               
chr3:14725476-14725116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 93
               

               
Conread position:
               
2-485
               

               
Cow position:
               
chr3:75570286-75570783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
50, 40
               

               
Conread position:
               
2-532
               

               
Cow position:
               
chr3:55010011-55010550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 63
               

               
Conread position:
               
2-540
               

               
Cow position:
               
chr3:16656325-16656872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 103
               

               
Conread position:
               
2-544
               

               
Cow position:
               
chr3:29596555-29595962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
600
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
2-563
               

               
Cow position:
               
chr3:45183661-45184268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 247
               

               
Conread position:
               
3-132
               

               
Cow position:
               
chr3:30682870-30682999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
3-140
               

               
Cow position:
               
chr3:22078237-22078094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
3-144
               

               
Cow position:
               
chr3:49787715-49787572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
3-146
               

               
Cow position:
               
chr3:3453741-3453591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
3-147
               

               
Cow position:
               
chr3:55105987-55106138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-150
               

               
Cow position:
               
chr3:11607976-11607830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
135, 74
               

               
Conread position:
               
3-154
               

               
Cow position:
               
chr3:67942374-67942532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-160
               

               
Cow position:
               
chr3:46259871-46259708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 83
               

               
Conread position:
               
3-161
               

               
Cow position:
               
chr3:76300933-76300767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr3:70333070-70333226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chr3:79398304-79398136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr3:15859223-15859386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
84, 93
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr3:19044609-19044773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 113
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr3:31361582-31361418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr3:62186317-62186144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chr3:80958350-80958518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 137
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chr3:29234519-29234691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 7
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chr3:37641485-37641316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
3-168
               

               
Cow position:
               
chr3:60371143-60370972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 29
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr3:49363266-49363097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr3:51150289-51150116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 7
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr3:59885690-59885528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr3:76168470-76168644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-171
               

               
Cow position:
               
chr3:61680476-61680304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr3:2016591-2016420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr3:54557825-54557659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
135, 52
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr3:55730307-55730485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-176
               

               
Cow position:
               
chr3:32376971-32376796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
49, 33
               

               
Conread position:
               
3-176
               

               
Cow position:
               
chr3:47198967-47199145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
62, 13
               

               
Conread position:
               
3-176
               

               
Cow position:
               
chr3:65308294-65308472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
49, 118
               

               
Conread position:
               
3-176
               

               
Cow position:
               
chr3:70756480-70756660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chr3:27246808-27246978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
135, 49
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chr3:45314511-45314325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chr3:59681748-59681923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
123, 116
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chr3:75966623-75966800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 142
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr3:986174-985994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
49, 97
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr3:9718090-9718271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 168
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr3:41366541-41366730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr3:43388966-43389148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr3:58101834-58101659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
70, 113
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr3:61023861-61024043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr3:63860451-63860631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr3:70402797-70402624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
136, 62
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr3:79339417-79339599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chr3:84807167-84807348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
3-179
               

               
Cow position:
               
chr3:62370216-62370034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr3:18699949-18700134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr3:59947827-59947642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chr3:62789791-62789977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 175
               

               
Conread position:
               
3-182
               

               
Cow position:
               
chr3:3401700-3401523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
46, 17
               

               
Conread position:
               
3-183
               

               
Cow position:
               
chr3:68624378-68624189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-184
               

               
Cow position:
               
chr3:28323369-28323191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
136, 60
               

               
Conread position:
               
3-184
               

               
Cow position:
               
chr3:76056129-76056311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
3-184
               

               
Cow position:
               
chr3:80023156-80023335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
50, 30
               

               
Conread position:
               
3-186
               

               
Cow position:
               
chr3:7381673-7381857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 141
               

               
Conread position:
               
3-188
               

               
Cow position:
               
chr3:14211827-14212010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
135, 159
               

               
Conread position:
               
3-189
               

               
Cow position:
               
chr3:20021427-20021238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 171
               

               
Conread position:
               
3-190
               

               
Cow position:
               
chr3:5703335-5703146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 113
               

               
Conread position:
               
3-190
               

               
Cow position:
               
chr3:44960104-44959910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-190
               

               
Cow position:
               
chr3:46559557-46559747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
52, 80
               

               
Conread position:
               
3-191
               

               
Cow position:
               
chr3:81616291-81616484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 174
               

               
Conread position:
               
3-193
               

               
Cow position:
               
chr3:18831577-18831386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
131, 59
               

               
Conread position:
               
3-193
               

               
Cow position:
               
chr3:28902603-28902794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
3-194
               

               
Cow position:
               
chr3:78071633-78071828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
3-195
               

               
Cow position:
               
chr3:23132009-23132206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chr3:84137655-84137853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr3:4120212-4120406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
136, 55
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr3:13240914-13241117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
60, 96
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chr3:54905765-54905576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr3:15973729-15973522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr3:2484161-2483959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr3:3698803-3698614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
135, 56
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr3:11281928-11281721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr3:39988093-39988280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr3:59828229-59828438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr3:81234547-81234344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-204
               

               
Cow position:
               
chr3:52457068-52456872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
36, 93
               

               
Conread position:
               
3-208
               

               
Cow position:
               
chr3:83889408-83889197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
45, 158
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr3:10668720-10668931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chr3:72027798-72027582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 137
               

               
Conread position:
               
3-214
               

               
Cow position:
               
chr3:3275754-3275539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
136, 99
               

               
Conread position:
               
3-214
               

               
Cow position:
               
chr3:23203070-23203286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 113
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chr3:51609025-51609242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
66, 184
               

               
Conread position:
               
3-217
               

               
Cow position:
               
chr3:23753643-23753440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
136, 67
               

               
Conread position:
               
3-217
               

               
Cow position:
               
chr3:39996734-39996950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
136, 18
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr3:3584499-3584287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
155, 84
               

               
Conread position:
               
3-218
               

               
Cow position:
               
chr3:46792542-46792324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
61, 45
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr3:14547158-14546941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
66, 100
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chr3:29334251-29334475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 212
               

               
Conread position:
               
3-226
               

               
Cow position:
               
chr3:35075031-35074809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
136, 47
               

               
Conread position:
               
3-227
               

               
Cow position:
               
chr3:21866879-21867113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
3-228
               

               
Cow position:
               
chr3:15160676-15160450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
136, 190
               

               
Conread position:
               
3-231
               

               
Cow position:
               
chr3:82366288-82366055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
49, 145
               

               
Conread position:
               
3-233
               

               
Cow position:
               
chr3:5040144-5040378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
45, 155
               

               
Conread position:
               
3-234
               

               
Cow position:
               
chr3:40145626-40145385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-240
               

               
Cow position:
               
chr3:12090836-12090592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
49, 124
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr3:4071610-4071856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 113
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chr3:18059863-18059599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chr3:75238619-75238355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-254
               

               
Cow position:
               
chr3:2638092-2637830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
48, 235
               

               
Conread position:
               
3-260
               

               
Cow position:
               
chr3:59702333-59702066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
49, 145
               

               
Conread position:
               
3-260
               

               
Cow position:
               
chr3:64196984-64196718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
76, 248
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr3:3656674-3656400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
3-269
               

               
Cow position:
               
chr3:58527536-58527277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
3-272
               

               
Cow position:
               
chr3:48468335-48468059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
59, 205
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr3:72342407-72342115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-281
               

               
Cow position:
               
chr3:85118528-85118248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
53, 241
               

               
Conread position:
               
3-286
               

               
Cow position:
               
chr3:13380119-13380424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chr3:17058388-17058678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 198
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chr3:76024662-76024381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 15
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chr3:1517354-1517656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chr3:3889418-3889709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 47
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chr3:24468225-24468521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chr3:60389911-60389625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
137, 23
               

               
Conread position:
               
3-292
               

               
Cow position:
               
chr3:47417412-47417709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
66, 159
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chr3:15443567-15443874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 169
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chr3:34871727-34871424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
45, 119
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chr3:58317784-58318099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
3-296
               

               
Cow position:
               
chr3:55177592-55177898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
136, 61
               

               
Conread position:
               
3-298
               

               
Cow position:
               
chr3:50615104-50615416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
3-299
               

               
Cow position:
               
chr3:2648349-2648663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
49, 79
               

               
Conread position:
               
3-306
               

               
Cow position:
               
chr3:70333810-70334121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
137, 89
               

               
Conread position:
               
3-307
               

               
Cow position:
               
chr3:48900171-48900496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
49, 157
               

               
Conread position:
               
3-308
               

               
Cow position:
               
chr3:76267815-76268139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
3-313
               

               
Cow position:
               
chr3:68616176-68616487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
3-314
               

               
Cow position:
               
chr3:76713153-76713489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
48, 174
               

               
Conread position:
               
3-319
               

               
Cow position:
               
chr3:48810479-48810805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
38, 301
               

               
Conread position:
               
3-323
               

               
Cow position:
               
chr3:23920267-23920602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
49, 308
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr3:58764927-58765252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
137, 53
               

               
Conread position:
               
3-330
               

               
Cow position:
               
chr3:76922514-76922842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
3-331
               

               
Cow position:
               
chr3:19793056-19792712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
3-332
               

               
Cow position:
               
chr3:83491239-83490902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 62
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chr3:45211463-45211114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 241
               

               
Conread position:
               
3-335
               

               
Cow position:
               
chr3:3556707-3556367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 209
               

               
Conread position:
               
3-335
               

               
Cow position:
               
chr3:73395274-73394936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 172
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:11063520-11063197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:12705388-12705731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
138, 91
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:17456108-17456450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
66, 300
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:17936688-17937020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:23471304-23471649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 64
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:23734930-23735284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 313
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:25477951-25477631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
135, 84
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:43233662-43233322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
136, 298
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:44932671-44932327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 120
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:50768838-50768497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
61, 299
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:54373698-54374046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
49, 294
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:67744482-67744808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
137, 15
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:68156886-68156556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
45, 29
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:68707863-68708189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
138, 62
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:68880972-68881297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
140, 63
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:74533493-74533167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
138, 85
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chr3:78443408-78443744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
49, 174
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr3:4319878-4319528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 282
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr3:5374468-5374151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
201, 12
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr3:8393499-8393164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 62
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr3:36375379-36375730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 20
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr3:38828910-38828580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 27
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr3:57764372-57764041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
31, 48
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr3:58540358-58540715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 139
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr3:65969333-65968972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr3:82019683-82020026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
140, 278
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chr3:83215428-83215067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-339
               

               
Cow position:
               
chr3:59391966-59392294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
49, 131
               

               
Conread position:
               
3-340
               

               
Cow position:
               
chr3:36418328-36418655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
3-342
               

               
Cow position:
               
chr3:33252733-33253072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 203
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chr3:67520017-67520370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
135, 60
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr3:52651921-52652268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
49, 198
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr3:53875603-53875954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
46, 299
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr3:64280779-64281127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 63
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr3:68648336-68647970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chr3:70676390-70676030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
49, 95
               

               
Conread position:
               
3-390
               

               
Cow position:
               
chr3:18687060-18686660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 67
               

               
Conread position:
               
3-391
               

               
Cow position:
               
chr3:56476833-56476425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 41
               

               
Conread position:
               
3-393
               

               
Cow position:
               
chr3:16333963-16333547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 279
               

               
Conread position:
               
3-395
               

               
Cow position:
               
chr3:51233945-51234357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 62
               

               
Conread position:
               
3-398
               

               
Cow position:
               
chr3:51578165-51578585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 103
               

               
Conread position:
               
3-411
               

               
Cow position:
               
chr3:23408205-23408619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
136, 18
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr3:13329634-13330062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
128, 62
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr3:22221485-22221066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
49, 151
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chr3:29813385-29812954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
48, 65
               

               
Conread position:
               
3-425
               

               
Cow position:
               
chr3:3985475-3985039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 62
               

               
Conread position:
               
3-425
               

               
Cow position:
               
chr3:81087477-81087897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 144
               

               
Conread position:
               
3-434
               

               
Cow position:
               
chr3:30463017-30463466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 36
               

               
Conread position:
               
3-437
               

               
Cow position:
               
chr3:53910265-53909811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 13
               

               
Conread position:
               
3-440
               

               
Cow position:
               
chr3:27274686-27274233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
47, 138
               

               
Conread position:
               
3-445
               

               
Cow position:
               
chr3:6299617-6299172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
3-463
               

               
Cow position:
               
chr3:55970674-55970178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
3-464
               

               
Cow position:
               
chr3:76138618-76138160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
3-469
               

               
Cow position:
               
chr3:65058858-65058367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 172
               

               
Conread position:
               
3-479
               

               
Cow position:
               
chr3:17221974-17222496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 313
               

               
Conread position:
               
3-482
               

               
Cow position:
               
chr3:77582265-77581773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 151
               

               
Conread position:
               
3-493
               

               
Cow position:
               
chr3:210481-209964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 308
               

               
Conread position:
               
3-494
               

               
Cow position:
               
chr3:60597696-60597194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 62
               

               
Conread position:
               
3-497
               

               
Cow position:
               
chr3:22675948-22676442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 158
               

               
Conread position:
               
3-497
               

               
Cow position:
               
chr3:55189591-55190108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 292
               

               
Conread position:
               
3-497
               

               
Cow position:
               
chr3:79884321-79884849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 186
               

               
Conread position:
               
3-511
               

               
Cow position:
               
chr3:59605001-59604495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 151
               

               
Conread position:
               
3-512
               

               
Cow position:
               
chr3:7763817-7763291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 137
               

               
Conread position:
               
3-516
               

               
Cow position:
               
chr3:11987487-11986949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 303
               

               
Conread position:
               
3-516
               

               
Cow position:
               
chr3:68145696-68146206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 22
               

               
Conread position:
               
3-529
               

               
Cow position:
               
chr3:2025362-2024773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
3-532
               

               
Cow position:
               
chr3:68303477-68302930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 165
               

               
Conread position:
               
3-536
               

               
Cow position:
               
chr3:15051793-15052331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 142
               

               
Conread position:
               
3-538
               

               
Cow position:
               
chr3:61224590-61225144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 60
               

               
Conread position:
               
3-538
               

               
Cow position:
               
chr3:76172523-76173066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 50
               

               
Conread position:
               
3-539
               

               
Cow position:
               
chr3:2675191-2674624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 307
               

               
Conread position:
               
3-543
               

               
Cow position:
               
chr3:14553031-14552469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 290
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr3:4050340-4049792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 50
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr3:14465556-14466114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 13
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr3:20802481-20803037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 74
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr3:20996843-20997382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 72
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr3:48241766-48241212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 15
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chr3:59474279-59473706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 435
               

               
Conread position:
               
3-546
               

               
Cow position:
               
chr3:53046499-53047054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 155
               

               
Conread position:
               
3-549
               

               
Cow position:
               
chr3:65237182-65236603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-555
               

               
Cow position:
               
chr3:7566262-7566835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 62
               

               
Conread position:
               
3-555
               

               
Cow position:
               
chr3:9641714-9641127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
3-555
               

               
Cow position:
               
chr3:11254006-11254567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 209
               

               
Conread position:
               
3-555
               

               
Cow position:
               
chr3:18393243-18393803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 62
               

               
Conread position:
               
3-555
               

               
Cow position:
               
chr3:26904258-26903696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 53
               

               
Conread position:
               
3-555
               

               
Cow position:
               
chr3:54435127-54434552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
588
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 77
               

               
Conread position:
               
3-560
               

               
Cow position:
               
chr3:30180242-30179658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 305
               

               
Conread position:
               
3-563
               

               
Cow position:
               
chr3:48253038-48252466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 62
               

               
Conread position:
               
3-563
               

               
Cow position:
               
chr3:48363228-48362655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 147
               

               
Conread position:
               
3-563
               

               
Cow position:
               
chr3:82055969-82056539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 55
               

               
Conread position:
               
4-145
               

               
Cow position:
               
chr3:57790767-57790626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
135, 72
               

               
Conread position:
               
4-166
               

               
Cow position:
               
chr3:83199671-83199503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
48, 77
               

               
Conread position:
               
4-170
               

               
Cow position:
               
chr3:64800389-64800562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
4-173
               

               
Cow position:
               
chr3:20065989-20066169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
4-177
               

               
Cow position:
               
chr3:27286673-27286499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
4-177
               

               
Cow position:
               
chr3:53604586-53604765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
4-179
               

               
Cow position:
               
chr3:62312956-62312775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr3:73525077-73525275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
4-198
               

               
Cow position:
               
chr3:41863780-41863584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
4-198
               

               
Cow position:
               
chr3:84174462-84174260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
4-200
               

               
Cow position:
               
chr3:35624385-35624586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
48, 94
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chr3:1011650-1011441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
4-212
               

               
Cow position:
               
chr3:40212877-40213088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
63, 176
               

               
Conread position:
               
4-253
               

               
Cow position:
               
chr3:80733692-80733945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 180
               

               
Conread position:
               
4-277
               

               
Cow position:
               
chr3:14194031-14194307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
132, 49
               

               
Conread position:
               
4-278
               

               
Cow position:
               
chr3:42796360-42796638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
61, 78
               

               
Conread position:
               
4-288
               

               
Cow position:
               
chr3:42434170-42434472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
20, 152
               

               
Conread position:
               
4-309
               

               
Cow position:
               
chr3:15153846-15153534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 261
               

               
Conread position:
               
4-337
               

               
Cow position:
               
chr3:8061278-8060941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
65, 21
               

               
Conread position:
               
4-337
               

               
Cow position:
               
chr3:55712589-55712243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 40
               

               
Conread position:
               
4-337
               

               
Cow position:
               
chr3:57754317-57754666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
4-338
               

               
Cow position:
               
chr3:19793432-19793777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 120
               

               
Conread position:
               
4-345
               

               
Cow position:
               
chr3:70334534-70334897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 340
               

               
Conread position:
               
4-445
               

               
Cow position:
               
chr3:2518383-2518848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 203
               

               
Conread position:
               
4-464
               

               
Cow position:
               
chr3:54903725-54903244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
48, 174
               

               
Conread position:
               
4-538
               

               
Cow position:
               
chr3:59000605-59001144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 60
               

               
Conread position:
               
4-543
               

               
Cow position:
               
chr3:68587176-68586632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 85
               

               
Conread position:
               
4-544
               

               
Cow position:
               
chr3:15953924-15954486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 491
               

               
Conread position:
               
4-544
               

               
Cow position:
               
chr3:17694844-17695413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 160
               

               
Conread position:
               
4-546
               

               
Cow position:
               
chr3:19711178-19711728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 125
               

               
Conread position:
               
4-555
               

               
Cow position:
               
chr3:31419853-31419275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
586
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 189
               

               
Conread position:
               
4-555
               

               
Cow position:
               
chr3:45882057-45881484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 255
               

               
Conread position:
               
5-195
               

               
Cow position:
               
chr3:29828257-29828454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
5-203
               

               
Cow position:
               
chr3:74644717-74644512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
58, 170
               

               
Conread position:
               
5-238
               

               
Cow position:
               
chr3:84250392-84250630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
167, 60
               

               
Conread position:
               
5-322
               

               
Cow position:
               
chr3:32787619-32787289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
31, 266
               

               
Conread position:
               
5-345
               

               
Cow position:
               
chr3:71238307-71237962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 126
               

               
Conread position:
               
5-490
               

               
Cow position:
               
chr3:53150490-53149970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 37
               

               
Conread position:
               
5-544
               

               
Cow position:
               
chr3:1830416-1830975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
570
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 144
               

               
Conread position:
               
5-562
               

               
Cow position:
               
chr3:71231555-71230978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 285
               

               
Conread position:
               
6-178
               

               
Cow position:
               
chr3:59271987-59271813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
63, 126
               

               
Conread position:
               
6-232
               

               
Cow position:
               
chr3:27976366-27976606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
38, 48
               

               
Conread position:
               
6-335
               

               
Cow position:
               
chr3:60265099-60265426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 136
               

               
Conread position:
               
6-336
               

               
Cow position:
               
chr3:39969707-39970053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
53, 304
               

               
Conread position:
               
6-492
               

               
Cow position:
               
chr3:53270989-53270462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 304
               

               
Conread position:
               
6-544
               

               
Cow position:
               
chr3:72777389-72776830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
7-217
               

               
Cow position:
               
chr3:74787581-74787371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
44, 136
               

               
Conread position:
               
7-278
               

               
Cow position:
               
chr3:35055821-35056108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
7-312
               

               
Cow position:
               
chr3:60264566-60264876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
132, 58
               

               
Conread position:
               
7-324
               

               
Cow position:
               
chr3:55819904-55819574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 103
               

               
Conread position:
               
7-336
               

               
Cow position:
               
chr3:72474077-72473726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
26, 17
               

               
Conread position:
               
7-409
               

               
Cow position:
               
chr3:30008750-30009185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
6, 250
               

               
Conread position:
               
7-469
               

               
Cow position:
               
chr3:59597328-59596870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 58
               

               
Conread position:
               
7-555
               

               
Cow position:
               
chr3:67929103-67929692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
8-181
               

               
Cow position:
               
chr3:77171472-77171292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
25, 18
               

               
Conread position:
               
8-264
               

               
Cow position:
               
chr3:55094076-55094350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 7
               

               
Conread position:
               
8-310
               

               
Cow position:
               
chr3:59035198-59034874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
8-339
               

               
Cow position:
               
chr3:39661299-39661642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
5, 149
               

               
Conread position:
               
8-346
               

               
Cow position:
               
chr3:48851812-48852158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
5, 228
               

               
Conread position:
               
8-418
               

               
Cow position:
               
chr3:23877154-23876714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 105
               

               
Conread position:
               
11-538
               

               
Cow position:
               
chr3:65413123-65413691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 285
               

               
Conread position:
               
12-182
               

               
Cow position:
               
chr3:20911258-20911433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
12-216
               

               
Cow position:
               
chr3:16107222-16107414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
12-334
               

               
Cow position:
               
chr3:52608331-52608004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
40, 239
               

               
Conread position:
               
12-342
               

               
Cow position:
               
chr3:13890630-13890276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
12-414
               

               
Cow position:
               
chr3:49482561-49482984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 198
               

               
Conread position:
               
13-198
               

               
Cow position:
               
chr3:58452194-58452008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
50, 95
               

               
Conread position:
               
13-238
               

               
Cow position:
               
chr3:23804654-23804431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
56, 130
               

               
Conread position:
               
13-238
               

               
Cow position:
               
chr3:39247880-39248107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
114, 30
               

               
Conread position:
               
13-314
               

               
Cow position:
               
chr3:48072734-48073037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
20, 11
               

               
Conread position:
               
13-416
               

               
Cow position:
               
chr3:14801896-14801469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
50, 241
               

               
Conread position:
               
13-543
               

               
Cow position:
               
chr3:7337635-7338186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 12
               

               
Conread position:
               
14-178
               

               
Cow position:
               
chr3:58432299-58432465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
14-342
               

               
Cow position:
               
chr3:30940958-30940625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
55, 128
               

               
Conread position:
               
14-412
               

               
Cow position:
               
chr3:32585293-32584880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
124, 51
               

               
Conread position:
               
14-415
               

               
Cow position:
               
chr3:77365139-77365575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 292
               

               
Conread position:
               
15-280
               

               
Cow position:
               
chr3:73299215-73298955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
126, 43
               

               
Conread position:
               
15-413
               

               
Cow position:
               
chr3:44102114-44101702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 78
               

               
Conread position:
               
16-259
               

               
Cow position:
               
chr3:65019711-65019976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
16-336
               

               
Cow position:
               
chr3:26970959-26970642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
16-336
               

               
Cow position:
               
chr3:53739051-53739371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
125, 9
               

               
Conread position:
               
16-336
               

               
Cow position:
               
chr3:54946270-54945943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
16-539
               

               
Cow position:
               
chr3:75050475-75051034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 256
               

               
Conread position:
               
17-210
               

               
Cow position:
               
chr3:56948948-56949140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
122, 48
               

               
Conread position:
               
17-214
               

               
Cow position:
               
chr3:54067942-54067741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
34, 160
               

               
Conread position:
               
17-326
               

               
Cow position:
               
chr3:20674731-20675048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 57
               

               
Conread position:
               
17-336
               

               
Cow position:
               
chr3:15388367-15388030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
35, 295
               

               
Conread position:
               
17-463
               

               
Cow position:
               
chr3:31309206-31309691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 281
               

               
Conread position:
               
18-544
               

               
Cow position:
               
chr3:37041565-37041029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 345
               

               
Conread position:
               
21-176
               

               
Cow position:
               
chr3:4271510-4271354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
21-319
               

               
Cow position:
               
chr3:71478735-71478423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
148, 119
               

               
Conread position:
               
21-418
               

               
Cow position:
               
chr3:68582863-68583286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
119, 11
               

               
Conread position:
               
26-256
               

               
Cow position:
               
chr3:69650753-69650985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
31, 199
               

               
Conread position:
               
26-332
               

               
Cow position:
               
chr3:26982194-26981883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 176
               

               
Conread position:
               
26-337
               

               
Cow position:
               
chr3:14599065-14598764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
96, 39
               

               
Conread position:
               
26-347
               

               
Cow position:
               
chr3:15751578-15751918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 57
               

               
Conread position:
               
26-425
               

               
Cow position:
               
chr3:14601567-14602004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
26, 289
               

               
Conread position:
               
26-464
               

               
Cow position:
               
chr3:61323470-61323024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 182
               

               
Conread position:
               
26-543
               

               
Cow position:
               
chr3:47284947-47284431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
26-544
               

               
Cow position:
               
chr3:80565100-80564551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
559
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 169
               

               
Conread position:
               
26-546
               

               
Cow position:
               
chr3:77271142-77271690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 260
               

               
Conread position:
               
29-251
               

               
Cow position:
               
chr3:26230239-26229996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
32-416
               

               
Cow position:
               
chr3:26681685-26682075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
20, 115
               

               
Conread position:
               
37-198
               

               
Cow position:
               
chr3:36160067-36160234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
37-278
               

               
Cow position:
               
chr3:48477915-48478158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
102, 5
               

               
Conread position:
               
37-555
               

               
Cow position:
               
chr3:2630888-2630374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
15, 74
               

               
Conread position:
               
39-398
               

               
Cow position:
               
chr3:16254719-16255065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
30, 104
               

               
Conread position:
               
41-155
               

               
Cow position:
               
chr3:63069248-63069363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
41-296
               

               
Cow position:
               
chr3:38783725-38783468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
16, 166
               

               
Conread position:
               
41-344
               

               
Cow position:
               
chr3:67930068-67930375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
36, 5
               

               
Conread position:
               
41-544
               

               
Cow position:
               
chr3:73709164-73708650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 50
               

               
Conread position:
               
42-219
               

               
Cow position:
               
chr3:27727714-27727892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 29
               

               
Conread position:
               
42-246
               

               
Cow position:
               
chr3:83988649-83988435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
98, 78
               

               
Conread position:
               
42-544
               

               
Cow position:
               
chr3:82461296-82460762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 264
               

               
Conread position:
               
43-299
               

               
Cow position:
               
chr3:74846594-74846861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
94, 27
               

               
Conread position:
               
43-337
               

               
Cow position:
               
chr3:79591775-79592071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
96, 159
               

               
Conread position:
               
43-544
               

               
Cow position:
               
chr3:49328062-49327537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 264
               

               
Conread position:
               
44-382
               

               
Cow position:
               
chr3:8733243-8733589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
5, 102
               

               
Conread position:
               
46-312
               

               
Cow position:
               
chr3:3913329-3913612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
46-336
               

               
Cow position:
               
chr3:23168953-23169251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
97, 114
               

               
Conread position:
               
47-199
               

               
Cow position:
               
chr3:5305910-5305757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
48-311
               

               
Cow position:
               
chr3:58973407-58973143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
48-345
               

               
Cow position:
               
chr3:8394055-8393745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
20, 256
               

               
Conread position:
               
49-182
               

               
Cow position:
               
chr3:58010721-58010851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
90, 81
               

               
Conread position:
               
49-185
               

               
Cow position:
               
chr3:20175158-20175021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
49-216
               

               
Cow position:
               
chr3:21642097-21641932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
89, 101
               

               
Conread position:
               
49-279
               

               
Cow position:
               
chr3:18144008-18144252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
49-287
               

               
Cow position:
               
chr3:32457303-32457062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
91, 50
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chr3:51604505-51604789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
90, 121
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chr3:66883833-66884127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
20, 93
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chr3:75687328-75687625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
91, 40
               

               
Conread position:
               
49-408
               

               
Cow position:
               
chr3:75045765-75046144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 115
               

               
Conread position:
               
49-410
               

               
Cow position:
               
chr3:57760608-57760244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 246
               

               
Conread position:
               
49-421
               

               
Cow position:
               
chr3:73442986-73443374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
156, 68
               

               
Conread position:
               
49-424
               

               
Cow position:
               
chr3:63179965-63179578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 41
               

               
Conread position:
               
49-477
               

               
Cow position:
               
chr3:83474853-83474406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
90, 17
               

               
Conread position:
               
49-538
               

               
Cow position:
               
chr3:49218193-49218711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 258
               

               
Conread position:
               
49-539
               

               
Cow position:
               
chr3:2680623-2680135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 92
               

               
Conread position:
               
50-170
               

               
Cow position:
               
chr3:61133747-61133626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
50-178
               

               
Cow position:
               
chr3:1533995-1534125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
50-180
               

               
Cow position:
               
chr3:36190001-36189870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
84, 122
               

               
Conread position:
               
50-196
               

               
Cow position:
               
chr3:8814001-8814150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 146
               

               
Conread position:
               
50-203
               

               
Cow position:
               
chr3:28258202-28258050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
89, 30
               

               
Conread position:
               
50-203
               

               
Cow position:
               
chr3:55984207-55984054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
89, 82
               

               
Conread position:
               
50-203
               

               
Cow position:
               
chr3:56704210-56704366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
50-216
               

               
Cow position:
               
chr3:61467080-61467248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
50-218
               

               
Cow position:
               
chr3:64373047-64373217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
50-278
               

               
Cow position:
               
chr3:84175715-84175955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
89, 26
               

               
Conread position:
               
50-289
               

               
Cow position:
               
chr3:10104147-10103910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
185, 16
               

               
Conread position:
               
50-293
               

               
Cow position:
               
chr3:21081277-21081518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
149, 69
               

               
Conread position:
               
50-320
               

               
Cow position:
               
chr3:53508720-53508451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
89, 163
               

               
Conread position:
               
50-336
               

               
Cow position:
               
chr3:53318510-53318218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 53
               

               
Conread position:
               
50-336
               

               
Cow position:
               
chr3:74134813-74134520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
91, 200
               

               
Conread position:
               
50-337
               

               
Cow position:
               
chr3:5044704-5044992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
89, 156
               

               
Conread position:
               
50-337
               

               
Cow position:
               
chr3:25690902-25690603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
90, 184
               

               
Conread position:
               
50-337
               

               
Cow position:
               
chr3:53113284-53112987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 254
               

               
Conread position:
               
50-345
               

               
Cow position:
               
chr3:48296807-48296515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
189, 91
               

               
Conread position:
               
50-398
               

               
Cow position:
               
chr3:70899999-70899636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
50-414
               

               
Cow position:
               
chr3:75158464-75158085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 67
               

               
Conread position:
               
50-416
               

               
Cow position:
               
chr3:66900624-66901024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
50-439
               

               
Cow position:
               
chr3:70402005-70401598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 230
               

               
Conread position:
               
50-464
               

               
Cow position:
               
chr3:17934828-17935257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 202
               

               
Conread position:
               
50-473
               

               
Cow position:
               
chr3:81470987-81471436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 201
               

               
Conread position:
               
50-484
               

               
Cow position:
               
chr3:71497029-71497496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
50-507
               

               
Cow position:
               
chr3:59621539-59621977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 234
               

               
Conread position:
               
50-526
               

               
Cow position:
               
chr3:12711806-12712318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 256
               

               
Conread position:
               
50-536
               

               
Cow position:
               
chr3:6690109-6689593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 412
               

               
Conread position:
               
50-538
               

               
Cow position:
               
chr3:81371758-81371252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 181
               

               
Conread position:
               
50-544
               

               
Cow position:
               
chr3:16752150-16752657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 154
               

               
Conread position:
               
50-544
               

               
Cow position:
               
chr3:59630404-59630910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 102
               

               
Conread position:
               
51-170
               

               
Cow position:
               
chr3:35285151-35285031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
51-336
               

               
Cow position:
               
chr3:78945731-78946018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
61, 123
               

               
Conread position:
               
51-337
               

               
Cow position:
               
chr3:27940035-27940314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
88, 99
               

               
Conread position:
               
51-345
               

               
Cow position:
               
chr3:31055905-31056192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
88, 155
               

               
Conread position:
               
51-414
               

               
Cow position:
               
chr3:55124176-55124558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
89, 28
               

               
Conread position:
               
51-544
               

               
Cow position:
               
chr3:6853429-6853913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 83
               

               
Conread position:
               
51-544
               

               
Cow position:
               
chr3:52017879-52017350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 391
               

               
Conread position:
               
52-292
               

               
Cow position:
               
chr3:43727178-43726934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
38, 57
               

               
Conread position:
               
52-298
               

               
Cow position:
               
chr3:5366875-5366623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
156, 238
               

               
Conread position:
               
52-310
               

               
Cow position:
               
chr3:79645323-79645603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
52-330
               

               
Cow position:
               
chr3:69144800-69144527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
87, 149
               

               
Conread position:
               
52-336
               

               
Cow position:
               
chr3:13507575-13507283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 37
               

               
Conread position:
               
52-337
               

               
Cow position:
               
chr3:53592582-53592883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
52-339
               

               
Cow position:
               
chr3:30055345-30055638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
51, 159
               

               
Conread position:
               
52-346
               

               
Cow position:
               
chr3:45279573-45279270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
87, 299
               

               
Conread position:
               
52-348
               

               
Cow position:
               
chr3:18067239-18066938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 88
               

               
Conread position:
               
52-425
               

               
Cow position:
               
chr3:56059918-56059516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
89, 255
               

               
Conread position:
               
52-430
               

               
Cow position:
               
chr3:52863076-52863477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 252
               

               
Conread position:
               
52-452
               

               
Cow position:
               
chr3:28898115-28898546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 251
               

               
Conread position:
               
52-510
               

               
Cow position:
               
chr3:31206983-31206497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 444
               

               
Conread position:
               
52-544
               

               
Cow position:
               
chr3:14263499-14262985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 43
               

               
Conread position:
               
53-210
               

               
Cow position:
               
chr3:21997682-21997840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
53-287
               

               
Cow position:
               
chr3:72503790-72504038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
53-314
               

               
Cow position:
               
chr3:59883964-59884236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
53-479
               

               
Cow position:
               
chr3:59451710-59451250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 234
               

               
Conread position:
               
53-539
               

               
Cow position:
               
chr3:46901304-46900781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 71
               

               
Conread position:
               
53-544
               

               
Cow position:
               
chr3:80581759-80581267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 15
               

               
Conread position:
               
54-163
               

               
Cow position:
               
chr3:4086759-4086869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
54-216
               

               
Cow position:
               
chr3:68130185-68130340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
54-273
               

               
Cow position:
               
chr3:33693922-33693693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
86, 11
               

               
Conread position:
               
54-312
               

               
Cow position:
               
chr3:52487725-52487473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
42, 115
               

               
Conread position:
               
54-337
               

               
Cow position:
               
chr3:21546995-21547284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
23, 64
               

               
Conread position:
               
54-337
               

               
Cow position:
               
chr3:71423450-71423737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
85, 96
               

               
Conread position:
               
54-452
               

               
Cow position:
               
chr3:67704651-67704218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 252
               

               
Conread position:
               
55-279
               

               
Cow position:
               
chr3:8901733-8901512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
73, 88
               

               
Conread position:
               
55-306
               

               
Cow position:
               
chr3:24935468-24935215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
55-538
               

               
Cow position:
               
chr3:80053440-80053937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 25
               

               
Conread position:
               
57-336
               

               
Cow position:
               
chr3:3738583-3738303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 86
               

               
Conread position:
               
57-544
               

               
Cow position:
               
chr3:79292929-79292418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 23
               

               
Conread position:
               
58-288
               

               
Cow position:
               
chr3:3649123-3649355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
85, 123
               

               
Conread position:
               
58-386
               

               
Cow position:
               
chr3:20677741-20678073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
159, 87
               

               
Conread position:
               
58-396
               

               
Cow position:
               
chr3:57624565-57624201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 223
               

               
Conread position:
               
58-544
               

               
Cow position:
               
chr3:14626049-14626561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 172
               

               
Conread position:
               
58-544
               

               
Cow position:
               
chr3:61279009-61278505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 44
               

               
Conread position:
               
59-203
               

               
Cow position:
               
chr3:67959822-67959961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
59-216
               

               
Cow position:
               
chr3:57877666-57877508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
59-319
               

               
Cow position:
               
chr3:54100626-54100891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
59-346
               

               
Cow position:
               
chr3:38691308-38691601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 7
               

               
Conread position:
               
61-165
               

               
Cow position:
               
chr3:4167178-4167282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
78, 9
               

               
Conread position:
               
61-238
               

               
Cow position:
               
chr3:53703866-53704052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
77, 29
               

               
Conread position:
               
62-345
               

               
Cow position:
               
chr3:18725546-18725829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 234
               

               
Conread position:
               
62-544
               

               
Cow position:
               
chr3:50614739-50614234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 245
               

               
Conread position:
               
63-201
               

               
Cow position:
               
chr3:58940221-58940083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
76, 109
               

               
Conread position:
               
63-337
               

               
Cow position:
               
chr3:26960492-26960777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
77, 243
               

               
Conread position:
               
63-439
               

               
Cow position:
               
chr3:2216464-2216055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
78, 360
               

               
Conread position:
               
64-178
               

               
Cow position:
               
chr3:40199200-40199315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
65-346
               

               
Cow position:
               
chr3:13577109-13577381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
75, 5
               

               
Conread position:
               
65-418
               

               
Cow position:
               
chr3:59208888-59208530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
171, 34
               

               
Conread position:
               
65-540
               

               
Cow position:
               
chr3:55271951-55272438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 239
               

               
Conread position:
               
65-562
               

               
Cow position:
               
chr3:42423234-42423762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 73
               

               
Conread position:
               
66-190
               

               
Cow position:
               
chr3:11705344-11705219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
66-290
               

               
Cow position:
               
chr3:46541734-46541969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
66-497
               

               
Cow position:
               
chr3:28908110-28908566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 270
               

               
Conread position:
               
66-528
               

               
Cow position:
               
chr3:5365770-5365291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
66-531
               

               
Cow position:
               
chr3:58767356-58766895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 184
               

               
Conread position:
               
66-544
               

               
Cow position:
               
chr3:34271007-34270524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 100
               

               
Conread position:
               
67-332
               

               
Cow position:
               
chr3:35153709-35153440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
77, 204
               

               
Conread position:
               
67-337
               

               
Cow position:
               
chr3:62826527-62826805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
76, 67
               

               
Conread position:
               
67-337
               

               
Cow position:
               
chr3:63269314-63269039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
76, 23
               

               
Conread position:
               
68-325
               

               
Cow position:
               
chr3:31850286-31850544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
73, 82
               

               
Conread position:
               
68-425
               

               
Cow position:
               
chr3:15228732-15229110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
69-314
               

               
Cow position:
               
chr3:30222281-30222022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
69-563
               

               
Cow position:
               
chr3:55085079-55085619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 485
               

               
Conread position:
               
70-418
               

               
Cow position:
               
chr3:52419027-52418681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
22, 73
               

               
Conread position:
               
70-418
               

               
Cow position:
               
chr3:73764111-73764477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 78
               

               
Conread position:
               
70-434
               

               
Cow position:
               
chr3:45648219-45647835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
138, 69
               

               
Conread position:
               
70-461
               

               
Cow position:
               
chr3:7678742-7678349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
166, 50
               

               
Conread position:
               
70-492
               

               
Cow position:
               
chr3:58285820-58286253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
26, 16
               

               
Conread position:
               
70-538
               

               
Cow position:
               
chr3:59588599-59588115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 71
               

               
Conread position:
               
70-545
               

               
Cow position:
               
chr3:24352949-24352474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 125
               

               
Conread position:
               
71-219
               

               
Cow position:
               
chr3:11292160-11292310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
71-345
               

               
Cow position:
               
chr3:2198970-2198688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
69, 42
               

               
Conread position:
               
71-345
               

               
Cow position:
               
chr3:54771093-54770810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
71-543
               

               
Cow position:
               
chr3:31046864-31047351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 230
               

               
Conread position:
               
72-412
               

               
Cow position:
               
chr3:42367426-42367767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 44
               

               
Conread position:
               
72-424
               

               
Cow position:
               
chr3:17895935-17895564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 42
               

               
Conread position:
               
73-339
               

               
Cow position:
               
chr3:34669647-34669916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 103
               

               
Conread position:
               
73-544
               

               
Cow position:
               
chr3:38347276-38346793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 67
               

               
Conread position:
               
75-235
               

               
Cow position:
               
chr3:11606404-11606236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
75-336
               

               
Cow position:
               
chr3:61539885-61539615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
122, 64
               

               
Conread position:
               
77-337
               

               
Cow position:
               
chr3:3638260-3638000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
62, 72
               

               
Conread position:
               
78-424
               

               
Cow position:
               
chr3:39171404-39171774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
23, 93
               
UCSC Genome Browser

               
Conread position:
               
78-444
               

               
Cow position:
               
chr3:27545738-27546144 (view  custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
60, 117
               
UCSC Genome Browser

               
               
               
Conread position:
79-555

               
               
               
Cow position:
chr3:80468598-80469072 (view  custom track)

               
               
               
Alignm length:
488

               
               
               
Alignm identity:
350

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
61, 41
UCSC Genome Browser

               
               
               
Conread position:
80-544

               
               
               
Cow position:
chr3:35852392-35852880 (view  custom track)

               
               
               
Alignm length:
496

               
               
               
Alignm identity:
345

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
32, 38

               
               
               Conread position:82-219
               
               
               Cow position:chr3:81277391-81277529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:82-327
               
               
               Cow position:chr3:62046741-62046486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):58, 116

               
               
               Conread position:82-329
               
               
               Cow position:chr3:26920987-26920730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 102

               
               
               Conread position:82-336
               
               
               Cow position:chr3:74502248-74502507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):58, 132

               
               
               Conread position:82-497
               
               
               Cow position:chr3:58968826-58969251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 217

               
               
               Conread position:82-550
               
               
               Cow position:chr3:61840352-61839875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:350
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 68

               
               
               Conread position:83-314
               
               
               Cow position:chr3:76015368-76015127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):57, 212

               
               
               Conread position:83-424
               
               
               Cow position:chr3:5097283-5096913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:84-333
               
               
               Cow position:chr3:72676166-72675910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 217

               
               
               Conread position:85-336
               
               
               Cow position:chr3:10896897-10896647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):7, 122

               
               
               Conread position:86-337
               
               
               Cow position:chr3:27696906-27697165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):57, 27

               
               
               Conread position:90-314
               
               
               Cow position:chr3:4036016-4036240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 112

               
               
               Conread position:91-494
               
               
               Cow position:chr3:20437588-20438021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):49, 191

               
               
               Conread position:92-345
               
               
               Cow position:chr3:78896714-78896455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 201

               
               
               Conread position:96-337
               
               
               Cow position:chr3:73759454-73759702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):115, 206

               
               
               Conread position:105-382
               
               
               Cow position:chr3:74878535-74878821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:217
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):35, 222

               
               
               Conread position:112-330
               
               
               Cow position:chr3:81359060-81359292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:113-544
               
               
               Cow position:chr3:80818763-80818324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:308
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):27, 93

               
               
               Conread position:115-424
               
               
               Cow position:chr3:17957511-17957177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:244
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:117-337
               
               
               Cow position:chr3:46350713-46350477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 11

               
               
               Conread position:117-337
               
               
               Cow position:chr3:83921226-83921016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):76, 24

               
               
               Conread position:117-544
               
               
               Cow position:chr3:36656761-36657183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 89

               
               
               Conread position:120-443
               
               
               Cow position:chr3:65800624-65800286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:247
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):85, 25

               
               
               Conread position:120-518
               
               
               Cow position:chr3:31771722-31771312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 6

               
               
               Conread position:120-531
               
               
               Cow position:chr3:19708069-19708494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 21

               
               
               Conread position:120-544
               
               
               Cow position:chr3:66375358-66374919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 302

               
               
               Conread position:120-555
               
               
               Cow position:chr3:66609805-66610259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 40

               
               
               Conread position:122-334
               
               
               Cow position:chr3:63332855-63332631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):21, 99

               
               
               Conread position:124-310
               
               
               Cow position:chr3:2850863-2851054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):84, 17

               
               
               Conread position:125-290
               
               
               Cow position:chr3:50328589-50328750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):129, 16

               
               
               Conread position:126-291
               
               
               Cow position:chr3:80953680-80953504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 8

               
               
               Conread position:128-550
               
               
               Cow position:chr3:83201493-83201906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 174

               
               
               Conread position:129-555
               
               
               Cow position:chr3:42178183-42177735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 12

               
               
               Conread position:134-337
               
               
               Cow position:chr3:55947609-55947393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):6, 70

               
               
               Conread position:138-337
               
               
               Cow position:chr3:74500263-74500042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:138-547
               
               
               Cow position:chr3:39328420-39327999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 169

               
               
               Conread position:142-346
               
               
               Cow position:chr3:16157692-16157489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):77, 89

               
               
               Conread position:149-339
               
               
               Cow position:chr3:55106430-55106627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:151-544
               
               
               Cow position:chr3:59515111-59514712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:154-430
               
               
               Cow position:chr3:84000617-84000319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):54, 150

               
               
               Conread position:155-555
               
               
               Cow position:chr3:79207983-79208409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 229

               
               
               Conread position:157-346
               
               
               Cow position:chr3:15859665-15859861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 128

               
               
               Conread position:160-292
               
               
               Cow position:chr3:15790553-15790417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:160-324
               
               
               Cow position:chr3:15232029-15231857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 152

               
               
               Conread position:161-289
               
               
               Cow position:chr3:11198786-11198916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):46, 5

               
               
               Conread position:165-337
               
               
               Cow position:chr3:25060073-25059891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):40, 132

               
               
               Conread position:166-337
               
               
               Cow position:chr3:63860897-63861083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:166-349
               
               
               Cow position:chr3:61024309-61024502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):44, 146

               
               
               Conread position:167-398
               
               
               Cow position:chr3:51506963-51506736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):69, 116

               
               
               Conread position:172-555
               
               
               Cow position:chr3:45313036-45312631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 14

               
               
               Conread position:174-337
               
               
               Cow position:chr3:67161928-67161754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:176-444
               
               
               Cow position:chr3:18700246-18700508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:180-336
               
               
               Cow position:chr3:8604040-8604199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 117

               
               
               Conread position:181-337
               
               
               Cow position:chr3:25691728-25691567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 120

               
               
               Conread position:183-544
               
               
               Cow position:chr3:14717769-14717404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 50

               
               
               Conread position:184-345
               
               
               Cow position:chr3:65381124-65380959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:205-392
               
               
               Cow position:chr3:4087216-4087424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:210-521
               
               
               Cow position:chr3:57789572-57789258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 75

               
               
               Conread position:211-422
               
               
               Cow position:chr3:56704602-56704825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 78

               
               
               Conread position:211-555
               
               
               Cow position:chr3:2483388-2483037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 235

               
               
               Conread position:212-503
               
               
               Cow position:chr3:48211429-48211140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 57

               
               
               Conread position:214-484
               
               
               Cow position:chr3:61361345-61361067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 233

               
               
               Conread position:265-545
               
               
               Cow position:chr3:75050175-75050457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:342-544
               
               
               Cow position:chr3:9116698-9116500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:416-555
               
               
               Cow position:chr3:78894885-78895024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0
Show alignments to all cow chromosomes.