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Cow genome map

           
Conread name:
           
Pig1-107L24
        

               
Conread position:
               
1-335
               

               
Cow position:
               
chrX:48237030-48236682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
59, 120
               

               
Conread position:
               
1-383
               

               
Cow position:
               
chrX:1499868-1499470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 68
               

               
Conread position:
               
2-178
               

               
Cow position:
               
chrX:2551290-2551122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
135, 56
               

               
Conread position:
               
2-201
               

               
Cow position:
               
chrX:4327969-4328175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
13, 92
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chrX:24170512-24170723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
49, 124
               

               
Conread position:
               
2-203
               

               
Cow position:
               
chrX:32574529-32574323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
2-219
               

               
Cow position:
               
chrX:32318513-32318294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
137, 21
               

               
Conread position:
               
2-337
               

               
Cow position:
               
chrX:29601616-29601965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 307
               

               
Conread position:
               
2-461
               

               
Cow position:
               
chrX:30922385-30921908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
50, 206
               

               
Conread position:
               
2-544
               

               
Cow position:
               
chrX:126969-126431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 63
               

               
Conread position:
               
2-544
               

               
Cow position:
               
chrX:34222927-34222389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 122
               

               
Conread position:
               
3-130
               

               
Cow position:
               
chrX:35509468-35509599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
3-147
               

               
Cow position:
               
chrX:11589155-11589305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-147
               

               
Cow position:
               
chrX:22552767-22552917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
3-150
               

               
Cow position:
               
chrX:26881867-26882021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-154
               

               
Cow position:
               
chrX:41199434-41199279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
3-155
               

               
Cow position:
               
chrX:15100190-15100037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
81, 27
               

               
Conread position:
               
3-158
               

               
Cow position:
               
chrX:41011102-41010949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
136, 18
               

               
Conread position:
               
3-160
               

               
Cow position:
               
chrX:10237701-10237864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 83
               

               
Conread position:
               
3-161
               

               
Cow position:
               
chrX:37867466-37867301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-161
               

               
Cow position:
               
chrX:41166617-41166777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chrX:37867645-37867477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-164
               

               
Cow position:
               
chrX:1101762-1101602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
136, 61
               

               
Conread position:
               
3-165
               

               
Cow position:
               
chrX:42875421-42875256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chrX:1960213-1960383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
3-167
               

               
Cow position:
               
chrX:42760465-42760294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-169
               

               
Cow position:
               
chrX:11813286-11813116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
3-169
               

               
Cow position:
               
chrX:27415376-27415540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
135, 35
               

               
Conread position:
               
3-169
               

               
Cow position:
               
chrX:45759881-45759711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chrX:16556011-16556178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
90, 77
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chrX:27270581-27270414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chrX:32867082-32866914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chrX:37751899-37752067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
66, 50
               

               
Conread position:
               
3-174
               

               
Cow position:
               
chrX:35409964-35409788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 113
               

               
Conread position:
               
3-175
               

               
Cow position:
               
chrX:876635-876808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 39
               

               
Conread position:
               
3-176
               

               
Cow position:
               
chrX:17498535-17498355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chrX:14925485-14925308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 143
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chrX:31986360-31986542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chrX:34398571-34398752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-177
               

               
Cow position:
               
chrX:48822130-48822310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
49, 73
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chrX:51690-51865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chrX:34270773-34270594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 171
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chrX:37749780-37749952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
147, 13
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chrX:44995712-44995529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chrX:46910020-46909846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
137, 18
               

               
Conread position:
               
3-178
               

               
Cow position:
               
chrX:47378918-47379090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
136, 58
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chrX:16763718-16763897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
136, 166
               

               
Conread position:
               
3-181
               

               
Cow position:
               
chrX:46672383-46672558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 20
               

               
Conread position:
               
3-189
               

               
Cow position:
               
chrX:28068063-28067870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-189
               

               
Cow position:
               
chrX:41454741-41454934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-190
               

               
Cow position:
               
chrX:20345663-20345472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
42, 174
               

               
Conread position:
               
3-193
               

               
Cow position:
               
chrX:31480178-31479987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
56, 137
               

               
Conread position:
               
3-196
               

               
Cow position:
               
chrX:8759835-8759637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
56, 124
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chrX:19356676-19356480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
49, 132
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chrX:35392093-35392283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
135, 18
               

               
Conread position:
               
3-199
               

               
Cow position:
               
chrX:27668750-27668948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
48, 27
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chrX:16984847-16984651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
136, 91
               

               
Conread position:
               
3-200
               

               
Cow position:
               
chrX:28837096-28836903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chrX:4559946-4559747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
49, 150
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chrX:35285386-35285181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:32910309-32910111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
61, 110
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chrX:42282789-42282584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 122
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chrX:17524171-17524378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chrX:19018616-19018825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chrX:30672172-30672390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chrX:35278523-35278335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
137, 43
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chrX:38302026-38301815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chrX:41809963-41810161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
134, 60
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chrX:11653979-11653764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chrX:11762799-11763001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
136, 60
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chrX:27074839-27075052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
3-210
               

               
Cow position:
               
chrX:29478934-29478723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
3-211
               

               
Cow position:
               
chrX:34420948-34420732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
3-213
               

               
Cow position:
               
chrX:42449801-42450018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-214
               

               
Cow position:
               
chrX:23335763-23335978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
3-214
               

               
Cow position:
               
chrX:40337123-40336906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-216
               

               
Cow position:
               
chrX:43150643-43150420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
49, 92
               

               
Conread position:
               
3-217
               

               
Cow position:
               
chrX:13122156-13121930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
3-217
               

               
Cow position:
               
chrX:42894134-42893915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chrX:8642257-8642039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 125
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chrX:26843054-26843278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
48, 211
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chrX:35276198-35275976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
49, 184
               

               
Conread position:
               
3-219
               

               
Cow position:
               
chrX:36367722-36367951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chrX:42836393-42836164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
3-234
               

               
Cow position:
               
chrX:41941835-41941595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
49, 42
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chrX:28940456-28940210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
3-237
               

               
Cow position:
               
chrX:46793538-46793780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-238
               

               
Cow position:
               
chrX:17956901-17956660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
49, 136
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chrX:4645702-4645957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
3-247
               

               
Cow position:
               
chrX:1360294-1360040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
136, 72
               

               
Conread position:
               
3-247
               

               
Cow position:
               
chrX:36391976-36392234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
68, 122
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chrX:3806890-3806641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
66, 204
               

               
Conread position:
               
3-253
               

               
Cow position:
               
chrX:44339109-44339376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
49, 13
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chrX:48558958-48558686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
56, 35
               

               
Conread position:
               
3-267
               

               
Cow position:
               
chrX:27460080-27459788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
3-273
               

               
Cow position:
               
chrX:38208342-38208617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
136, 40
               

               
Conread position:
               
3-273
               

               
Cow position:
               
chrX:39352984-39352710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
188, 50
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chrX:36866385-36866092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
54, 100
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chrX:41238150-41238430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
136, 63
               

               
Conread position:
               
3-280
               

               
Cow position:
               
chrX:20957451-20957170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
62, 201
               

               
Conread position:
               
3-286
               

               
Cow position:
               
chrX:6559244-6559532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chrX:20881749-20882025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
205, 62
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chrX:40680827-40680523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:27261402-27261097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 13
               

               
Conread position:
               
3-290
               

               
Cow position:
               
chrX:29050454-29050156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
75, 29
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chrX:16323803-16324093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 155
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chrX:20168767-20168466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
3-291
               

               
Cow position:
               
chrX:44040389-44040108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
3-292
               

               
Cow position:
               
chrX:42855675-42855362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
3-293
               

               
Cow position:
               
chrX:33654631-33654935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 219
               

               
Conread position:
               
3-294
               

               
Cow position:
               
chrX:31515383-31515074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-297
               

               
Cow position:
               
chrX:12095559-12095870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 308
               

               
Conread position:
               
3-298
               

               
Cow position:
               
chrX:13924073-13923774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
56, 277
               

               
Conread position:
               
3-298
               

               
Cow position:
               
chrX:24457335-24457639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 213
               

               
Conread position:
               
3-314
               

               
Cow position:
               
chrX:24331989-24331665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
3-314
               

               
Cow position:
               
chrX:35885520-35885843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
3-315
               

               
Cow position:
               
chrX:10516466-10516141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 267
               

               
Conread position:
               
3-327
               

               
Cow position:
               
chrX:41846282-41846613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
3-331
               

               
Cow position:
               
chrX:45875602-45875261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
3-334
               

               
Cow position:
               
chrX:30840753-30840423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
135, 249
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chrX:1615846-1616179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
135, 44
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chrX:4278907-4279246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
30, 18
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chrX:4399330-4398994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
64, 120
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chrX:12979623-12979962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
33, 260
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chrX:29544674-29545013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 22
               

               
Conread position:
               
3-336
               

               
Cow position:
               
chrX:41027372-41027022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 303
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chrX:9425550-9425874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
68, 33
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chrX:10831269-10831629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 123
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chrX:12309173-12309521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 298
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chrX:24365610-24365962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
49, 119
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chrX:25035169-25035520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chrX:25207649-25207979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
76, 117
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chrX:36283552-36283213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chrX:38549658-38549316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 170
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chrX:43050282-43049923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
48, 116
               

               
Conread position:
               
3-337
               

               
Cow position:
               
chrX:46532278-46532642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-338
               

               
Cow position:
               
chrX:41871269-41870936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
138, 40
               

               
Conread position:
               
3-339
               

               
Cow position:
               
chrX:11633894-11633540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-339
               

               
Cow position:
               
chrX:27228341-27227985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-342
               

               
Cow position:
               
chrX:4403530-4403174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
49, 309
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chrX:3580157-3579800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 307
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chrX:6407756-6407404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 182
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chrX:36356316-36355971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 114
               

               
Conread position:
               
3-345
               

               
Cow position:
               
chrX:40567817-40567459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
64, 89
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chrX:29723963-29723597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
49, 93
               

               
Conread position:
               
3-346
               

               
Cow position:
               
chrX:35382830-35383160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 128
               

               
Conread position:
               
3-381
               

               
Cow position:
               
chrX:33001110-33000706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 60
               

               
Conread position:
               
3-390
               

               
Cow position:
               
chrX:46588032-46587611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 42
               

               
Conread position:
               
3-395
               

               
Cow position:
               
chrX:29542016-29542430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
3-396
               

               
Cow position:
               
chrX:27175212-27174782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 310
               

               
Conread position:
               
3-398
               

               
Cow position:
               
chrX:6488777-6488372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 69
               

               
Conread position:
               
3-414
               

               
Cow position:
               
chrX:42380900-42381330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 15
               

               
Conread position:
               
3-416
               

               
Cow position:
               
chrX:9201755-9201315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
30, 60
               

               
Conread position:
               
3-416
               

               
Cow position:
               
chrX:17231949-17231502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
3-418
               

               
Cow position:
               
chrX:30962663-30963106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 304
               

               
Conread position:
               
3-421
               

               
Cow position:
               
chrX:4768940-4768513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
61, 148
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chrX:34543998-34543547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 254
               

               
Conread position:
               
3-424
               

               
Cow position:
               
chrX:37119787-37119359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
137, 55
               

               
Conread position:
               
3-434
               

               
Cow position:
               
chrX:23497485-23497913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 87
               

               
Conread position:
               
3-438
               

               
Cow position:
               
chrX:25815687-25816150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 98
               

               
Conread position:
               
3-447
               

               
Cow position:
               
chrX:46072618-46073076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 62
               

               
Conread position:
               
3-449
               

               
Cow position:
               
chrX:27508812-27509286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 102
               

               
Conread position:
               
3-462
               

               
Cow position:
               
chrX:8925892-8925428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 62
               

               
Conread position:
               
3-464
               

               
Cow position:
               
chrX:8731306-8730799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 153
               

               
Conread position:
               
3-466
               

               
Cow position:
               
chrX:16762980-16762490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 73
               

               
Conread position:
               
3-473
               

               
Cow position:
               
chrX:42927618-42928071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 27
               

               
Conread position:
               
3-476
               

               
Cow position:
               
chrX:4268858-4269359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 77
               

               
Conread position:
               
3-480
               

               
Cow position:
               
chrX:30133112-30133620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
3-483
               

               
Cow position:
               
chrX:1175778-1176273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 111
               

               
Conread position:
               
3-523
               

               
Cow position:
               
chrX:43115361-43114833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 157
               

               
Conread position:
               
3-529
               

               
Cow position:
               
chrX:15546093-15545553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
3-534
               

               
Cow position:
               
chrX:42492309-42492880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 97
               

               
Conread position:
               
3-537
               

               
Cow position:
               
chrX:15231447-15231979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 304
               

               
Conread position:
               
3-537
               

               
Cow position:
               
chrX:31442627-31443173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 55
               

               
Conread position:
               
3-538
               

               
Cow position:
               
chrX:152117-151544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 103
               

               
Conread position:
               
3-539
               

               
Cow position:
               
chrX:15006947-15007506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 50
               

               
Conread position:
               
3-542
               

               
Cow position:
               
chrX:34554936-34554377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 428
               

               
Conread position:
               
3-543
               

               
Cow position:
               
chrX:13177272-13177816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
3-543
               

               
Cow position:
               
chrX:20339683-20340250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chrX:4632642-4633211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 222
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chrX:4825636-4826153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 40
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chrX:5118286-5118843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chrX:8869192-8869745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 303
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chrX:12250027-12249441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 45
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chrX:14973545-14974088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 62
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chrX:27705799-27705233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 194
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chrX:28632270-28632837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chrX:28846680-28847236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 209
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chrX:31489733-31489152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 330
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chrX:34238935-34238361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 272
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chrX:34441241-34441807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 176
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chrX:34565497-34564940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 94
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chrX:35269068-35268532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 18
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chrX:38218925-38218358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 293
               

               
Conread position:
               
3-544
               

               
Cow position:
               
chrX:44055015-44054444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 227
               

               
Conread position:
               
3-554
               

               
Cow position:
               
chrX:12290930-12290367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 244
               

               
Conread position:
               
3-555
               

               
Cow position:
               
chrX:34377151-34376583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 265
               

               
Conread position:
               
3-555
               

               
Cow position:
               
chrX:38964309-38963740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 47
               

               
Conread position:
               
3-555
               

               
Cow position:
               
chrX:40826538-40827118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
3-555
               

               
Cow position:
               
chrX:42246969-42247546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 294
               

               
Conread position:
               
3-561
               

               
Cow position:
               
chrX:11656290-11655701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 205
               

               
Conread position:
               
3-562
               

               
Cow position:
               
chrX:31436681-31436103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 296
               

               
Conread position:
               
3-563
               

               
Cow position:
               
chrX:15146987-15147560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 18
               

               
Conread position:
               
3-563
               

               
Cow position:
               
chrX:27446895-27446312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 205
               

               
Conread position:
               
3-564
               

               
Cow position:
               
chrX:41878725-41879310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 139
               

               
Conread position:
               
4-167
               

               
Cow position:
               
chrX:46068552-46068717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
4-168
               

               
Cow position:
               
chrX:40116679-40116523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
4-178
               

               
Cow position:
               
chrX:2314407-2314588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
4-184
               

               
Cow position:
               
chrX:25048891-25049076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chrX:17293167-17292969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
4-203
               

               
Cow position:
               
chrX:1122336-1122537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
48, 10
               

               
Conread position:
               
4-234
               

               
Cow position:
               
chrX:42432303-42432537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
134, 130
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chrX:10859102-10859386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 89
               

               
Conread position:
               
4-291
               

               
Cow position:
               
chrX:4296613-4296911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
44, 224
               

               
Conread position:
               
4-323
               

               
Cow position:
               
chrX:17949281-17949612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
48, 172
               

               
Conread position:
               
4-334
               

               
Cow position:
               
chrX:44397222-44396886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
57, 127
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chrX:14883746-14884093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
29, 20
               

               
Conread position:
               
4-336
               

               
Cow position:
               
chrX:40035228-40035575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
48, 177
               

               
Conread position:
               
4-337
               

               
Cow position:
               
chrX:27515070-27514736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
32, 208
               

               
Conread position:
               
4-339
               

               
Cow position:
               
chrX:27145810-27145485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
135, 200
               

               
Conread position:
               
4-416
               

               
Cow position:
               
chrX:36976163-36975717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 182
               

               
Conread position:
               
4-544
               

               
Cow position:
               
chrX:13868915-13868336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 183
               

               
Conread position:
               
5-297
               

               
Cow position:
               
chrX:40108303-40108608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 94
               

               
Conread position:
               
5-323
               

               
Cow position:
               
chrX:40320617-40320283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
47, 241
               

               
Conread position:
               
5-324
               

               
Cow position:
               
chrX:18111589-18111267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
47, 207
               

               
Conread position:
               
5-391
               

               
Cow position:
               
chrX:32420421-32420011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 83
               

               
Conread position:
               
5-414
               

               
Cow position:
               
chrX:35543094-35542661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
57, 158
               

               
Conread position:
               
5-544
               

               
Cow position:
               
chrX:6414247-6413686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 27
               

               
Conread position:
               
5-544
               

               
Cow position:
               
chrX:31250600-31250032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 410
               

               
Conread position:
               
5-555
               

               
Cow position:
               
chrX:15485423-15485996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 208
               

               
Conread position:
               
6-165
               

               
Cow position:
               
chrX:597269-597430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
46, 110
               

               
Conread position:
               
6-165
               

               
Cow position:
               
chrX:28850927-28850771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
6-182
               

               
Cow position:
               
chrX:11454383-11454215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
44, 48
               

               
Conread position:
               
6-312
               

               
Cow position:
               
chrX:46022984-46022677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
44, 156
               

               
Conread position:
               
6-337
               

               
Cow position:
               
chrX:47873127-47873474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 89
               

               
Conread position:
               
6-338
               

               
Cow position:
               
chrX:36393132-36393484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
46, 134
               

               
Conread position:
               
6-472
               

               
Cow position:
               
chrX:31294360-31294828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 208
               

               
Conread position:
               
6-555
               

               
Cow position:
               
chrX:31948725-31949301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 508
               

               
Conread position:
               
6-555
               

               
Cow position:
               
chrX:41790218-41790808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 432
               

               
Conread position:
               
7-342
               

               
Cow position:
               
chrX:41068928-41068585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
133, 294
               

               
Conread position:
               
7-532
               

               
Cow position:
               
chrX:4996797-4996267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 208
               

               
Conread position:
               
7-563
               

               
Cow position:
               
chrX:3130773-3130185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 48
               

               
Conread position:
               
8-199
               

               
Cow position:
               
chrX:19761957-19761764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
8-267
               

               
Cow position:
               
chrX:27511628-27511364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
8-284
               

               
Cow position:
               
chrX:8493274-8492996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
28, 200
               

               
Conread position:
               
8-336
               

               
Cow position:
               
chrX:35822539-35822207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
194, 7
               

               
Conread position:
               
8-531
               

               
Cow position:
               
chrX:46770754-46771319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 89
               

               
Conread position:
               
12-202
               

               
Cow position:
               
chrX:19717717-19717529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
127, 68
               

               
Conread position:
               
13-169
               

               
Cow position:
               
chrX:20583865-20583706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
13-209
               

               
Cow position:
               
chrX:35658999-35658800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 133
               

               
Conread position:
               
13-337
               

               
Cow position:
               
chrX:41674302-41673972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 286
               

               
Conread position:
               
14-297
               

               
Cow position:
               
chrX:47246558-47246843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
11, 247
               

               
Conread position:
               
15-220
               

               
Cow position:
               
chrX:38587642-38587854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
15-336
               

               
Cow position:
               
chrX:21672762-21672420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 11
               

               
Conread position:
               
15-345
               

               
Cow position:
               
chrX:7337043-7336684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
60, 240
               

               
Conread position:
               
16-202
               

               
Cow position:
               
chrX:11859337-11859530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
49, 117
               

               
Conread position:
               
16-219
               

               
Cow position:
               
chrX:20677948-20678148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
123, 145
               

               
Conread position:
               
17-138
               

               
Cow position:
               
chrX:39094132-39094250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
17-154
               

               
Cow position:
               
chrX:26720489-26720629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
17-168
               

               
Cow position:
               
chrX:48118538-48118692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
17-215
               

               
Cow position:
               
chrX:42331474-42331270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
122, 48
               

               
Conread position:
               
17-336
               

               
Cow position:
               
chrX:34792122-34792442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
124, 48
               

               
Conread position:
               
17-359
               

               
Cow position:
               
chrX:169343-169701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 151
               

               
Conread position:
               
17-546
               

               
Cow position:
               
chrX:44192244-44192803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 354
               

               
Conread position:
               
17-555
               

               
Cow position:
               
chrX:13647586-13648155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 292
               

               
Conread position:
               
19-204
               

               
Cow position:
               
chrX:1719304-1719120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
120, 34
               

               
Conread position:
               
19-210
               

               
Cow position:
               
chrX:26205258-26205449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
121, 51
               

               
Conread position:
               
19-238
               

               
Cow position:
               
chrX:23188593-23188812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
192, 121
               

               
Conread position:
               
19-336
               

               
Cow position:
               
chrX:27302073-27301734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
33, 122
               

               
Conread position:
               
19-477
               

               
Cow position:
               
chrX:46032530-46033011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 192
               

               
Conread position:
               
20-178
               

               
Cow position:
               
chrX:4092120-4091955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
21-201
               

               
Cow position:
               
chrX:39180039-39180225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
31, 99
               

               
Conread position:
               
21-531
               

               
Cow position:
               
chrX:20887451-20887991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 160
               

               
Conread position:
               
22-211
               

               
Cow position:
               
chrX:6599595-6599784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
118, 19
               

               
Conread position:
               
22-336
               

               
Cow position:
               
chrX:34753981-34754323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
22, 300
               

               
Conread position:
               
23-157
               

               
Cow position:
               
chrX:40543336-40543469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
117, 66
               

               
Conread position:
               
29-337
               

               
Cow position:
               
chrX:32330353-32330025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
25, 131
               

               
Conread position:
               
29-345
               

               
Cow position:
               
chrX:47186144-47186465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
37, 64
               

               
Conread position:
               
35-334
               

               
Cow position:
               
chrX:21642305-21642611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
18, 171
               

               
Conread position:
               
37-437
               

               
Cow position:
               
chrX:17888252-17888659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 28
               

               
Conread position:
               
37-540
               

               
Cow position:
               
chrX:32170714-32171238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 114
               

               
Conread position:
               
37-544
               

               
Cow position:
               
chrX:11614863-11614361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 26
               

               
Conread position:
               
39-337
               

               
Cow position:
               
chrX:44656786-44657097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
100, 288
               

               
Conread position:
               
42-337
               

               
Cow position:
               
chrX:16416668-16416374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
43-544
               

               
Cow position:
               
chrX:7695914-7695403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 7
               

               
Conread position:
               
44-337
               

               
Cow position:
               
chrX:23562021-23561740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
94, 15
               

               
Conread position:
               
46-465
               

               
Cow position:
               
chrX:37836742-37836308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 92
               

               
Conread position:
               
46-563
               

               
Cow position:
               
chrX:28134500-28133970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 20
               

               
Conread position:
               
47-190
               

               
Cow position:
               
chrX:27667584-27667444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
47-338
               

               
Cow position:
               
chrX:7710377-7710680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
47-544
               

               
Cow position:
               
chrX:34402167-34401638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 18
               

               
Conread position:
               
48-210
               

               
Cow position:
               
chrX:38722285-38722120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
48-287
               

               
Cow position:
               
chrX:23939886-23940116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 81
               

               
Conread position:
               
48-398
               

               
Cow position:
               
chrX:6265437-6265800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 98
               

               
Conread position:
               
49-178
               

               
Cow position:
               
chrX:11582382-11582252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
91, 126
               

               
Conread position:
               
49-203
               

               
Cow position:
               
chrX:42506072-42506221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
49-262
               

               
Cow position:
               
chrX:25037148-25036924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
49-268
               

               
Cow position:
               
chrX:15820755-15820530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
49-313
               

               
Cow position:
               
chrX:23562792-23562523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 5
               

               
Conread position:
               
49-315
               

               
Cow position:
               
chrX:38654280-38654544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
159, 82
               

               
Conread position:
               
49-327
               

               
Cow position:
               
chrX:47342276-47342001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
90, 108
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chrX:5872478-5872181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chrX:7718993-7718722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
160, 41
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chrX:8797410-8797115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
91, 106
               

               
Conread position:
               
49-337
               

               
Cow position:
               
chrX:21593448-21593151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8.96831e-44
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
49-345
               

               
Cow position:
               
chrX:27771807-27772105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
159, 88
               

               
Conread position:
               
49-425
               

               
Cow position:
               
chrX:9416525-9416934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
91, 16
               

               
Conread position:
               
49-494
               

               
Cow position:
               
chrX:7351458-7350992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 92
               

               
Conread position:
               
49-518
               

               
Cow position:
               
chrX:33640136-33639633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 454
               

               
Conread position:
               
49-543
               

               
Cow position:
               
chrX:28865844-28866348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 102
               

               
Conread position:
               
49-544
               

               
Cow position:
               
chrX:31373697-31373218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 156
               

               
Conread position:
               
50-178
               

               
Cow position:
               
chrX:4612722-4612851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 40
               

               
Conread position:
               
50-187
               

               
Cow position:
               
chrX:40355191-40355057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
90, 102
               

               
Conread position:
               
50-202
               

               
Cow position:
               
chrX:31829301-31829454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
50-203
               

               
Cow position:
               
chrX:29733433-29733586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
90, 26
               

               
Conread position:
               
50-204
               

               
Cow position:
               
chrX:21443571-21443721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
139, 79
               

               
Conread position:
               
50-219
               

               
Cow position:
               
chrX:18046554-18046389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
90, 15
               

               
Conread position:
               
50-219
               

               
Cow position:
               
chrX:20743765-20743593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
50-241
               

               
Cow position:
               
chrX:23498520-23498716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
154, 90
               

               
Conread position:
               
50-285
               

               
Cow position:
               
chrX:11317808-11318053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
50-296
               

               
Cow position:
               
chrX:16348411-16348665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
19, 42
               

               
Conread position:
               
50-304
               

               
Cow position:
               
chrX:29549394-29549651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
42, 15
               

               
Conread position:
               
50-313
               

               
Cow position:
               
chrX:42235365-42235640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
90, 25
               

               
Conread position:
               
50-324
               

               
Cow position:
               
chrX:27945894-27946182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
50-331
               

               
Cow position:
               
chrX:6259988-6260289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 109
               

               
Conread position:
               
50-334
               

               
Cow position:
               
chrX:13382485-13382196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
57, 100
               

               
Conread position:
               
50-336
               

               
Cow position:
               
chrX:616098-616397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
19, 257
               

               
Conread position:
               
50-336
               

               
Cow position:
               
chrX:9365516-9365809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
90, 183
               

               
Conread position:
               
50-336
               

               
Cow position:
               
chrX:18204303-18204598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 174
               

               
Conread position:
               
50-337
               

               
Cow position:
               
chrX:23785808-23785521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
19, 76
               

               
Conread position:
               
50-345
               

               
Cow position:
               
chrX:29680100-29680404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 253
               

               
Conread position:
               
50-345
               

               
Cow position:
               
chrX:32821188-32820884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 114
               

               
Conread position:
               
50-346
               

               
Cow position:
               
chrX:34503082-34502777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 253
               

               
Conread position:
               
50-349
               

               
Cow position:
               
chrX:45099288-45098973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
50-350
               

               
Cow position:
               
chrX:11084903-11085206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 75
               

               
Conread position:
               
50-424
               

               
Cow position:
               
chrX:23513866-23514258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
93, 16
               

               
Conread position:
               
50-424
               

               
Cow position:
               
chrX:27393866-27394254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 246
               

               
Conread position:
               
50-539
               

               
Cow position:
               
chrX:38226950-38227445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 52
               

               
Conread position:
               
50-543
               

               
Cow position:
               
chrX:22813222-22812703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 41
               

               
Conread position:
               
50-544
               

               
Cow position:
               
chrX:4043707-4044218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 89
               

               
Conread position:
               
50-544
               

               
Cow position:
               
chrX:43730064-43730552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 123
               

               
Conread position:
               
50-550
               

               
Cow position:
               
chrX:14599692-14599170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 39
               

               
Conread position:
               
50-551
               

               
Cow position:
               
chrX:18694772-18695288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 30
               

               
Conread position:
               
50-563
               

               
Cow position:
               
chrX:5017261-5017785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 65
               

               
Conread position:
               
50-563
               

               
Cow position:
               
chrX:27516678-27516154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 39
               

               
Conread position:
               
51-203
               

               
Cow position:
               
chrX:31626820-31626967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
51-204
               

               
Cow position:
               
chrX:25459569-25459729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
51-318
               

               
Cow position:
               
chrX:27119851-27119582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
99, 60
               

               
Conread position:
               
51-336
               

               
Cow position:
               
chrX:34412005-34411709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
88, 179
               

               
Conread position:
               
51-337
               

               
Cow position:
               
chrX:36061317-36061019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
90, 38
               

               
Conread position:
               
51-421
               

               
Cow position:
               
chrX:6690101-6690485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
51-555
               

               
Cow position:
               
chrX:42171139-42171670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 11
               

               
Conread position:
               
52-195
               

               
Cow position:
               
chrX:36313848-36313992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
52-253
               

               
Cow position:
               
chrX:11593837-11594055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
52-261
               

               
Cow position:
               
chrX:32977928-32978137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
89, 38
               

               
Conread position:
               
52-278
               

               
Cow position:
               
chrX:16575270-16575044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 154
               

               
Conread position:
               
52-278
               

               
Cow position:
               
chrX:39220237-39220001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
52-293
               

               
Cow position:
               
chrX:37129427-37129175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
52-298
               

               
Cow position:
               
chrX:21328071-21327806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
52-311
               

               
Cow position:
               
chrX:46546717-46546987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
52-336
               

               
Cow position:
               
chrX:6278340-6278637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
52-336
               

               
Cow position:
               
chrX:31252565-31252283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
87, 64
               

               
Conread position:
               
52-337
               

               
Cow position:
               
chrX:23563633-23563929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
52-345
               

               
Cow position:
               
chrX:23092027-23091737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
83, 15
               

               
Conread position:
               
52-425
               

               
Cow position:
               
chrX:34662689-34663080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
88, 49
               

               
Conread position:
               
53-238
               

               
Cow position:
               
chrX:29553441-29553250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
89, 14
               

               
Conread position:
               
53-336
               

               
Cow position:
               
chrX:47046357-47046650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
162, 87
               

               
Conread position:
               
53-337
               

               
Cow position:
               
chrX:22453942-22454228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
87, 36
               

               
Conread position:
               
53-337
               

               
Cow position:
               
chrX:46433647-46433350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
87, 23
               

               
Conread position:
               
53-504
               

               
Cow position:
               
chrX:36311727-36311279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 125
               

               
Conread position:
               
53-540
               

               
Cow position:
               
chrX:11717626-11718134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 249
               

               
Conread position:
               
54-438
               

               
Cow position:
               
chrX:28878018-28878416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 254
               

               
Conread position:
               
54-537
               

               
Cow position:
               
chrX:24424245-24424745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 175
               

               
Conread position:
               
54-555
               

               
Cow position:
               
chrX:878222-878741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 35
               

               
Conread position:
               
54-555
               

               
Cow position:
               
chrX:45113776-45113265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 16
               

               
Conread position:
               
56-248
               

               
Cow position:
               
chrX:24343417-24343609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
48, 141
               

               
Conread position:
               
56-344
               

               
Cow position:
               
chrX:22387096-22387386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 94
               

               
Conread position:
               
58-219
               

               
Cow position:
               
chrX:25412057-25411898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
82, 35
               

               
Conread position:
               
58-337
               

               
Cow position:
               
chrX:42873537-42873256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
54, 86
               

               
Conread position:
               
59-260
               

               
Cow position:
               
chrX:22914891-22915095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
81, 53
               

               
Conread position:
               
59-319
               

               
Cow position:
               
chrX:5679421-5679684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
149, 82
               

               
Conread position:
               
60-544
               

               
Cow position:
               
chrX:29289728-29289216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 241
               

               
Conread position:
               
66-190
               

               
Cow position:
               
chrX:10076115-10075992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
73, 105
               

               
Conread position:
               
66-291
               

               
Cow position:
               
chrX:5900606-5900377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
73, 84
               

               
Conread position:
               
66-337
               

               
Cow position:
               
chrX:43779708-43779984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
77, 38
               

               
Conread position:
               
66-522
               

               
Cow position:
               
chrX:43527652-43527164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
68-224
               

               
Cow position:
               
chrX:17966483-17966322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
70-251
               

               
Cow position:
               
chrX:29115844-29115661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
135, 23
               

               
Conread position:
               
70-336
               

               
Cow position:
               
chrX:17662458-17662728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
146, 71
               

               
Conread position:
               
70-356
               

               
Cow position:
               
chrX:39415230-39415524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
70, 229
               

               
Conread position:
               
70-398
               

               
Cow position:
               
chrX:1503467-1503125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
70, 137
               

               
Conread position:
               
70-516
               

               
Cow position:
               
chrX:7646396-7645925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 233
               

               
Conread position:
               
71-202
               

               
Cow position:
               
chrX:24054816-24054678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
71-307
               

               
Cow position:
               
chrX:36514753-36514999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
72, 219
               

               
Conread position:
               
71-544
               

               
Cow position:
               
chrX:11073052-11073565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 210
               

               
Conread position:
               
71-553
               

               
Cow position:
               
chrX:41123198-41122703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 101
               

               
Conread position:
               
72-345
               

               
Cow position:
               
chrX:16532334-16532062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
67, 94
               

               
Conread position:
               
72-410
               

               
Cow position:
               
chrX:29121185-29120834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 232
               

               
Conread position:
               
73-518
               

               
Cow position:
               
chrX:10411847-10412320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 231
               

               
Conread position:
               
74-555
               

               
Cow position:
               
chrX:11082486-11082985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 175
               

               
Conread position:
               
78-461
               

               
Cow position:
               
chrX:35413743-35413353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 73
               

               
Conread position:
               
79-424
               

               
Cow position:
               
chrX:11454918-11455292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
132, 45
               

               
Conread position:
               
80-543
               

               
Cow position:
               
chrX:7278041-7277569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 203
               

               
Conread position:
               
81-203
               

               
Cow position:
               
chrX:37665820-37665697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
82-398
               

               
Cow position:
               
chrX:7162183-7161858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
123, 8
               

               
Conread position:
               
82-425
               

               
Cow position:
               
chrX:1514291-1514645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 67
               

               
Conread position:
               
82-528
               

               
Cow position:
               
chrX:47481924-47481456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 68
               

               
Conread position:
               
82-544
               

               
Cow position:
               
chrX:37232535-37232051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 116
               

               
Conread position:
               
82-555
               

               
Cow position:
               
chrX:39558221-39558738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
59, 42
               

               
Conread position:
               
82-555
               

               
Cow position:
               
chrX:42469813-42470308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 203
               

               
Conread position:
               
83-416
               

               
Cow position:
               
chrX:15815209-15814865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 16
               

               
Conread position:
               
88-424
               

               
Cow position:
               
chrX:11856552-11856189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 217
               

               
Conread position:
               
89-345
               

               
Cow position:
               
chrX:43049452-43049204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
33, 69
               

               
Conread position:
               
91-337
               

               
Cow position:
               
chrX:21566526-21566266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
49, 107
               

               
Conread position:
               
93-337
               

               
Cow position:
               
chrX:26625554-26625809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
47, 159
               

               
Conread position:
               
93-471
               

               
Cow position:
               
chrX:48194918-48195328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
95-549
               

               
Cow position:
               
chrX:38936815-38936334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 73
               

               
Conread position:
               
104-337
               

               
Cow position:
               
chrX:20710178-20709939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
110-544
               

               
Cow position:
               
chrX:26440685-26441141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 47
               

               
Conread position:
               
112-337
               

               
Cow position:
               
chrX:2467982-2467747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
28, 136
               

               
Conread position:
               
112-337
               

               
Cow position:
               
chrX:27685347-27685111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
19, 184
               

               
Conread position:
               
112-505
               

               
Cow position:
               
chrX:44873463-44873862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
28, 43
               

               
Conread position:
               
114-422
               

               
Cow position:
               
chrX:27680494-27680165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
27, 165
               

               
Conread position:
               
116-290
               

               
Cow position:
               
chrX:1572045-1572228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
117-538
               

               
Cow position:
               
chrX:37843810-37843366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
120-417
               

               
Cow position:
               
chrX:12405291-12405602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
20, 274
               

               
Conread position:
               
125-539
               

               
Cow position:
               
chrX:42507563-42507999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 132
               

               
Conread position:
               
131-336
               

               
Cow position:
               
chrX:11589509-11589723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
9, 172
               

               
Conread position:
               
138-518
               

               
Cow position:
               
chrX:6234378-6234768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 168
               

               
Conread position:
               
149-306
               

               
Cow position:
               
chrX:12018352-12018185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
149-336
               

               
Cow position:
               
chrX:36961701-36961504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
149-345
               

               
Cow position:
               
chrX:41166902-41167109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
69, 157
               

               
Conread position:
               
152-555
               

               
Cow position:
               
chrX:42994670-42994243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 122
               

               
Conread position:
               
153-336
               

               
Cow position:
               
chrX:9855354-9855169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
55, 93
               

               
Conread position:
               
154-497
               

               
Cow position:
               
chrX:28845888-28845531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 151
               

               
Conread position:
               
155-306
               

               
Cow position:
               
chrX:29487954-29488107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
53, 141
               

               
Conread position:
               
157-337
               

               
Cow position:
               
chrX:42875035-42874845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
157-544
               

               
Cow position:
               
chrX:42461692-42462108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
159-459
               

               
Cow position:
               
chrX:34270452-34270141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
49, 145
               

               
Conread position:
               
159-550
               

               
Cow position:
               
chrX:15139497-15139915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
48, 141
               

               
Conread position:
               
164-544
               

               
Cow position:
               
chrX:17498130-17497736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 138
               

               
Conread position:
               
166-464
               

               
Cow position:
               
chrX:40648029-40647698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
45, 257
               

               
Conread position:
               
166-506
               

               
Cow position:
               
chrX:14925043-14924678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
173-346
               

               
Cow position:
               
chrX:11581969-11581798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
175-337
               

               
Cow position:
               
chrX:14003612-14003777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
42, 122
               

               
Conread position:
               
181-345
               

               
Cow position:
               
chrX:30832824-30832990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
27, 116
               

               
Conread position:
               
181-346
               

               
Cow position:
               
chrX:26286009-26285834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
28, 101
               

               
Conread position:
               
201-544
               

               
Cow position:
               
chrX:25967037-25966696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
38, 57
               

               
Conread position:
               
203-426
               

               
Cow position:
               
chrX:35284620-35284375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
33, 93
               

               
Conread position:
               
208-555
               

               
Cow position:
               
chrX:41743908-41743542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
10, 91
               

               
Conread position:
               
234-555
               

               
Cow position:
               
chrX:35409624-35409297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 9
               

               
Conread position:
               
249-528
               

               
Cow position:
               
chrX:41594352-41594616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
165, 10
               
Show alignments to all cow chromosomes.