Cow genome map
| Conread name: | Pig1-114E04 |
| Conread position: | 1-146 |
| Cow position: | chr1:64189349-64189485 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-172 |
| Cow position: | chr1:20422356-20422189 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 154, 69 |
| Conread position: | 1-264 |
| Cow position: | chr1:67994983-67995246 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 17 |
| Conread position: | 1-271 |
| Cow position: | chr1:6881374-6881099 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 40, 71 |
| Conread position: | 1-285 |
| Cow position: | chr1:61661458-61661174 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 41, 105 |
| Conread position: | 2-256 |
| Cow position: | chr1:3657509-3657243 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 44, 62 |
| Conread position: | 4-264 |
| Cow position: | chr1:56073606-56073343 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 56 |
| Conread position: | 8-120 |
| Cow position: | chr1:70236433-70236324 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 64 |
| Conread position: | 8-120 |
| Cow position: | chr1:74947266-74947159 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 35, 62 |
| Conread position: | 8-122 |
| Cow position: | chr1:32244544-32244434 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 60 |
| Conread position: | 8-129 |
| Cow position: | chr1:50634545-50634428 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 8-140 |
| Cow position: | chr1:5061883-5062010 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 63 |
| Conread position: | 8-197 |
| Cow position: | chr1:29916263-29916452 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 20, 64 |
| Conread position: | 8-233 |
| Cow position: | chr1:92642586-92642347 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 64 |
| Conread position: | 8-249 |
| Cow position: | chr1:6795073-6794809 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 33, 89 |
| Conread position: | 8-254 |
| Cow position: | chr1:4175412-4175165 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 123, 18 |
| Conread position: | 8-254 |
| Cow position: | chr1:49131261-49131010 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 39, 73 |
| Conread position: | 8-256 |
| Cow position: | chr1:13195564-13195310 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 8-256 |
| Cow position: | chr1:56643730-56643481 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 134, 35 |
| Conread position: | 8-256 |
| Cow position: | chr1:97603748-97603516 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 175, 18 |
| Conread position: | 8-266 |
| Cow position: | chr1:9869992-9869728 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 8-266 |
| Cow position: | chr1:97619980-97619722 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 8-268 |
| Cow position: | chr1:67407335-67407068 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 36, 150 |
| Conread position: | 8-271 |
| Cow position: | chr1:78750831-78750561 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 8-275 |
| Cow position: | chr1:73363812-73363544 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 64 |
| Conread position: | 9-120 |
| Cow position: | chr1:51836427-51836534 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 9-257 |
| Cow position: | chr1:25183989-25184235 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 47, 67 |
| Conread position: | 10-238 |
| Cow position: | chr1:29657686-29657924 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 114, 57 |
| Conread position: | 11-236 |
| Cow position: | chr1:80856189-80856427 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 37, 95 |
| Conread position: | 12-276 |
| Cow position: | chr1:4441243-4440979 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 102, 58 |
| Conread position: | 14-129 |
| Cow position: | chr1:76850866-76850753 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 58 |
| Conread position: | 14-266 |
| Cow position: | chr1:71302992-71303244 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 29, 60 |
| Conread position: | 18-256 |
| Cow position: | chr1:101771772-101772023 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 76, 55 |
| Conread position: | 19-275 |
| Cow position: | chr1:10467737-10467480 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 167, 51 |
| Conread position: | 20-256 |
| Cow position: | chr1:44746734-44746983 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 26, 51 |
| Conread position: | 29-263 |
| Cow position: | chr1:85651890-85651651 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 17, 42 |
| Conread position: | 31-256 |
| Cow position: | chr1:75998577-75998345 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 97, 34 |
| Conread position: | 53-256 |
| Cow position: | chr1:47117362-47117160 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 76, 19 |
| Conread position: | 77-266 |
| Cow position: | chr1:4239441-4239640 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 98-273 |
| Cow position: | chr1:82455318-82455494 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 51, 26 |
| Conread position: | 100-271 |
| Cow position: | chr1:22488769-22488952 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 36, 130 |
| Conread position: | 133-272 |
| Cow position: | chr1:22738077-22737939 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 70 |
| Conread position: | 143-263 |
| Cow position: | chr1:3556105-3555985 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 109, 101 |
| Conread position: | 146-254 |
| Cow position: | chr1:5278402-5278293 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 146-265 |
| Cow position: | chr1:48255785-48255904 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-265 |
| Cow position: | chr1:72542101-72541988 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 151-275 |
| Cow position: | chr1:71826237-71826112 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 152-273 |
| Cow position: | chr1:29184322-29184201 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.