Cow genome map
| Conread name: | Pig1-114E04 |
| Conread position: | 1-121 |
| Cow position: | chr11:8828802-8828689 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-221 |
| Cow position: | chr11:4610008-4609776 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 45, 73 |
| Conread position: | 1-256 |
| Cow position: | chr11:75255262-75255504 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 17 |
| Conread position: | 1-264 |
| Cow position: | chr11:47169180-47168909 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 78 |
| Conread position: | 3-257 |
| Cow position: | chr11:9253195-9252927 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 3-281 |
| Cow position: | chr11:46001856-46001571 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 43, 254 |
| Conread position: | 4-261 |
| Cow position: | chr11:17964122-17963863 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 8-122 |
| Cow position: | chr11:50951386-50951496 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 8-135 |
| Cow position: | chr11:53452516-53452394 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 32, 63 |
| Conread position: | 8-154 |
| Cow position: | chr11:876932-877073 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 8-174 |
| Cow position: | chr11:64845481-64845651 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 8-207 |
| Cow position: | chr11:76395616-76395823 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 24 |
| Conread position: | 8-232 |
| Cow position: | chr11:64589452-64589230 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 116, 5 |
| Conread position: | 8-237 |
| Cow position: | chr11:63157077-63156836 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 53 |
| Conread position: | 8-238 |
| Cow position: | chr11:32800168-32800402 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 117, 60 |
| Conread position: | 8-253 |
| Cow position: | chr11:14941750-14941513 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 116, 30 |
| Conread position: | 8-254 |
| Cow position: | chr11:19269242-19268994 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 33, 65 |
| Conread position: | 8-256 |
| Cow position: | chr11:16000759-16001026 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 8-256 |
| Cow position: | chr11:20491403-20491668 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 38, 63 |
| Conread position: | 8-256 |
| Cow position: | chr11:24967289-24967542 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 113, 38 |
| Conread position: | 8-262 |
| Cow position: | chr11:80012007-80011743 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 38, 66 |
| Conread position: | 8-263 |
| Cow position: | chr11:38009978-38009715 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 120, 62 |
| Conread position: | 8-264 |
| Cow position: | chr11:47903685-47903951 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 8-269 |
| Cow position: | chr11:11460323-11460585 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 8-270 |
| Cow position: | chr11:42519573-42519847 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 37, 43 |
| Conread position: | 8-271 |
| Cow position: | chr11:2908603-2908881 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 8-271 |
| Cow position: | chr11:73473938-73473684 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 9-256 |
| Cow position: | chr11:67236244-67236500 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 123, 37 |
| Conread position: | 9-264 |
| Cow position: | chr11:65694001-65693750 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 32, 21 |
| Conread position: | 10-256 |
| Cow position: | chr11:13039307-13039080 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 168, 46 |
| Conread position: | 10-271 |
| Cow position: | chr11:75242480-75242753 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 31, 64 |
| Conread position: | 14-256 |
| Cow position: | chr11:2394224-2393989 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 32, 58 |
| Conread position: | 23-266 |
| Cow position: | chr11:4115211-4114960 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 24, 49 |
| Conread position: | 29-283 |
| Cow position: | chr11:13690444-13690209 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 35-253 |
| Cow position: | chr11:51745214-51745444 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 6, 38 |
| Conread position: | 35-259 |
| Cow position: | chr11:23047882-23047661 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 106, 11 |
| Conread position: | 40-269 |
| Cow position: | chr11:51389653-51389437 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 83-263 |
| Cow position: | chr11:57831642-57831456 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 137-266 |
| Cow position: | chr11:2367020-2366893 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 138-265 |
| Cow position: | chr11:27424558-27424431 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 138-273 |
| Cow position: | chr11:31354683-31354820 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 125, 111 |
| Conread position: | 144-279 |
| Cow position: | chr11:46485307-46485444 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 119, 45 |
| Conread position: | 145-264 |
| Cow position: | chr11:69824225-69824106 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-275 |
| Cow position: | chr11:39274328-39274200 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 145-276 |
| Cow position: | chr11:36653103-36652972 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 49 |
| Conread position: | 151-269 |
| Cow position: | chr11:46024710-46024593 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 151-273 |
| Cow position: | chr11:55610338-55610459 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 0 |
Show alignments to all cow chromosomes.