Cow genome map
| Conread name: | Pig1-114E04 |
| Conread position: | 1-122 |
| Cow position: | chr3:22171008-22171123 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 10 |
| Conread position: | 1-136 |
| Cow position: | chr3:34316142-34316008 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 9, 75 |
| Conread position: | 1-145 |
| Cow position: | chr3:50347786-50347924 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 45, 70 |
| Conread position: | 1-252 |
| Cow position: | chr3:58865641-58865384 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 15, 73 |
| Conread position: | 1-254 |
| Cow position: | chr3:51255607-51255871 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 39, 70 |
| Conread position: | 1-257 |
| Cow position: | chr3:20092695-20092431 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 9, 34 |
| Conread position: | 1-261 |
| Cow position: | chr3:63237927-63237664 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 42, 113 |
| Conread position: | 1-263 |
| Cow position: | chr3:11949535-11949275 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 9, 71 |
| Conread position: | 1-264 |
| Cow position: | chr3:82473877-82474142 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 72 |
| Conread position: | 1-272 |
| Cow position: | chr3:23496738-23496469 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 135, 45 |
| Conread position: | 2-256 |
| Cow position: | chr3:8923866-8924134 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 8, 46 |
| Conread position: | 2-263 |
| Cow position: | chr3:58350405-58350672 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 74 |
| Conread position: | 2-271 |
| Cow position: | chr3:16809966-16809704 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 72 |
| Conread position: | 2-272 |
| Cow position: | chr3:49428131-49427876 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 205 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 43, 67 |
| Conread position: | 3-263 |
| Cow position: | chr3:46332315-46332061 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 42, 78 |
| Conread position: | 4-122 |
| Cow position: | chr3:58174727-58174842 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 41, 67 |
| Conread position: | 4-131 |
| Cow position: | chr3:43657884-43657763 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 4-255 |
| Cow position: | chr3:4329165-4329412 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 4-256 |
| Cow position: | chr3:23476825-23477084 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 7 |
| Conread position: | 8-134 |
| Cow position: | chr3:62884033-62884153 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 8-134 |
| Cow position: | chr3:66116285-66116162 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 8-172 |
| Cow position: | chr3:53588560-53588393 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 38, 63 |
| Conread position: | 8-189 |
| Cow position: | chr3:36174243-36174072 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 8-254 |
| Cow position: | chr3:55992040-55991777 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 8-256 |
| Cow position: | chr3:22271608-22271361 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 8-256 |
| Cow position: | chr3:23111674-23111419 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 8-256 |
| Cow position: | chr3:25090889-25091123 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 38, 44 |
| Conread position: | 8-256 |
| Cow position: | chr3:51146835-51146578 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 73 |
| Conread position: | 8-256 |
| Cow position: | chr3:63038962-63039194 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 126, 29 |
| Conread position: | 8-259 |
| Cow position: | chr3:17742339-17742586 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 39, 65 |
| Conread position: | 8-263 |
| Cow position: | chr3:66738604-66738859 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 8-263 |
| Cow position: | chr3:73777108-73777371 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 30, 67 |
| Conread position: | 8-264 |
| Cow position: | chr3:32597101-32596843 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 35, 65 |
| Conread position: | 8-264 |
| Cow position: | chr3:53538355-53538613 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 33, 48 |
| Conread position: | 8-264 |
| Cow position: | chr3:83396023-83396283 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 64 |
| Conread position: | 8-273 |
| Cow position: | chr3:71135619-71135897 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 8-275 |
| Cow position: | chr3:17284668-17284940 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 89 |
| Conread position: | 8-279 |
| Cow position: | chr3:33633061-33632792 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 17 |
| Conread position: | 8-284 |
| Cow position: | chr3:4223144-4223421 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 64 |
| Conread position: | 9-122 |
| Cow position: | chr3:48433777-48433886 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 62 |
| Conread position: | 9-276 |
| Cow position: | chr3:61116543-61116295 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 10-256 |
| Cow position: | chr3:5420033-5419770 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 80, 63 |
| Conread position: | 10-270 |
| Cow position: | chr3:8790762-8790493 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 31, 61 |
| Conread position: | 12-256 |
| Cow position: | chr3:22954021-22953790 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 171, 34 |
| Conread position: | 13-265 |
| Cow position: | chr3:70129976-70129726 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 108, 33 |
| Conread position: | 25-277 |
| Cow position: | chr3:74561567-74561309 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 21, 48 |
| Conread position: | 26-276 |
| Cow position: | chr3:35018999-35018753 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 26-277 |
| Cow position: | chr3:22781127-22780884 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 238, 20 |
| Conread position: | 28-265 |
| Cow position: | chr3:3063592-3063827 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 35-274 |
| Cow position: | chr3:74035667-74035431 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 40-247 |
| Cow position: | chr3:69446875-69446660 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 88, 18 |
| Conread position: | 56-273 |
| Cow position: | chr3:20405680-20405895 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 86, 15 |
| Conread position: | 77-246 |
| Cow position: | chr3:58852066-58852241 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 77-269 |
| Cow position: | chr3:66145808-66146008 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 78-276 |
| Cow position: | chr3:66147197-66147381 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 173, 20 |
| Conread position: | 98-290 |
| Cow position: | chr3:58226954-58226757 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 136-273 |
| Cow position: | chr3:38306593-38306731 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 115 |
| Conread position: | 137-265 |
| Cow position: | chr3:45690901-45690775 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 137-271 |
| Cow position: | chr3:29095366-29095229 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 9, 109 |
| Conread position: | 145-267 |
| Cow position: | chr3:42293996-42293877 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 115, 12 |
| Conread position: | 146-256 |
| Cow position: | chr3:58632545-58632655 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 147-277 |
| Cow position: | chr3:84976951-84976821 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 108, 54 |
| Conread position: | 148-273 |
| Cow position: | chr3:58181045-58180919 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 119, 24 |
| Conread position: | 153-263 |
| Cow position: | chr3:53633326-53633437 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 155-276 |
| Cow position: | chr3:50462484-50462602 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 164-278 |
| Cow position: | chr3:20054763-20054878 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 19, 0 |
Show alignments to all cow chromosomes.