Cow genome map

Conread name: Pig1-117N15

Conread position: 31-259
Cow position: chr12:44743483-44743242 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 177
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 37, 50

Conread position: 34-267
Cow position: chr12:1488028-1487782 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 170
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 59

Conread position: 35-315
Cow position: chr12:44517757-44518039 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 194
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 108, 50

Conread position: 35-476
Cow position: chr12:5146800-5146367 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 53

Conread position: 36-310
Cow position: chr12:28582524-28582787 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 184
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 20

Conread position: 36-310
Cow position: chr12:31198747-31198473 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 197
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 52, 144

Conread position: 36-398
Cow position: chr12:40910309-40910683 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 263
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 105, 73

Conread position: 37-279
Cow position: chr12:17702246-17702500 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 172
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 12

Conread position: 38-309
Cow position: chr12:30688322-30688044 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 204
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 7, 48

Conread position: 40-405
Cow position: chr12:31959862-31959493 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 258
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 160, 49

Conread position: 40-479
Cow position: chr12:47799846-47800283 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 111

Conread position: 41-212
Cow position: chr12:27495981-27495813 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 100, 43

Conread position: 41-263
Cow position: chr12:38484413-38484649 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 32, 0

Conread position: 41-266
Cow position: chr12:30064915-30064690 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 102, 43

Conread position: 41-267
Cow position: chr12:27938895-27938659 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 169
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 143

Conread position: 41-303
Cow position: chr12:32400177-32399908 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 191
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 39, 207

Conread position: 41-310
Cow position: chr12:5797581-5797839 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 195
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 172, 48

Conread position: 41-315
Cow position: chr12:3757066-3757337 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 37

Conread position: 41-315
Cow position: chr12:18769095-18769376 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 252

Conread position: 41-346
Cow position: chr12:16851031-16851345 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 233

Conread position: 41-383
Cow position: chr12:47804132-47803781 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 249
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 47, 135

Conread position: 41-430
Cow position: chr12:2711473-2711062 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 52

Conread position: 41-430
Cow position: chr12:24559333-24558914 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 92

Conread position: 41-439
Cow position: chr12:25312393-25312809 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 72

Conread position: 41-469
Cow position: chr12:27055582-27055147 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 21

Conread position: 41-477
Cow position: chr12:16543606-16544049 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 310
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 154, 43

Conread position: 42-227
Cow position: chr12:1030954-1030774 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 8, 14

Conread position: 42-424
Cow position: chr12:20326746-20326357 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 43

Conread position: 43-251
Cow position: chr12:41642405-41642196 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 26, 17

Conread position: 43-289
Cow position: chr12:34089817-34089555 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 194
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 98, 217

Conread position: 43-302
Cow position: chr12:5538992-5539253 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 191
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 8, 101

Conread position: 43-306
Cow position: chr12:5899498-5899236 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 188
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 170, 26

Conread position: 43-407
Cow position: chr12:30596440-30596064 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 45

Conread position: 43-440
Cow position: chr12:8868902-8869325 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 293
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 44, 50

Conread position: 43-464
Cow position: chr12:20312197-20312605 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 98

Conread position: 44-288
Cow position: chr12:48406091-48405854 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 186
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 169, 76

Conread position: 46-376
Cow position: chr12:27038783-27039130 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 214

Conread position: 46-383
Cow position: chr12:39753835-39753491 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 39

Conread position: 51-223
Cow position: chr12:41093859-41094030 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 34, 20

Conread position: 51-454
Cow position: chr12:1223375-1223774 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 269

Conread position: 51-462
Cow position: chr12:21829052-21828631 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 29

Conread position: 52-312
Cow position: chr12:12938955-12939227 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 211
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 12, 247

Conread position: 55-212
Cow position: chr12:3906435-3906276 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 81, 38

Conread position: 55-306
Cow position: chr12:34103170-34103426 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 193
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 33, 67

Conread position: 56-476
Cow position: chr12:31429608-31430028 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 95

Conread position: 57-242
Cow position: chr12:6117864-6117670 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 157
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 26, 0

Conread position: 57-315
Cow position: chr12:25619412-25619677 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 237

Conread position: 60-363
Cow position: chr12:41979341-41979653 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 234
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 79, 25

Conread position: 63-423
Cow position: chr12:5631927-5632292 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 254
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 150, 94

Conread position: 64-287
Cow position: chr12:35354741-35354509 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 180
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 35, 81

Conread position: 64-301
Cow position: chr12:18417524-18417277 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 192
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 74, 204

Conread position: 64-312
Cow position: chr12:19715086-19715324 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 73, 0

Conread position: 64-431
Cow position: chr12:17472273-17472641 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 30

Conread position: 66-423
Cow position: chr12:44595860-44596232 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 249
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 72, 26

Conread position: 69-423
Cow position: chr12:35807630-35807266 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 108

Conread position: 75-310
Cow position: chr12:18518610-18518376 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 29, 149

Conread position: 75-381
Cow position: chr12:17001204-17000890 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 214
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 76, 24

Conread position: 76-230
Cow position: chr12:11696623-11696461 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 8, 0

Conread position: 76-256
Cow position: chr12:29770632-29770817 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 65, 22

Conread position: 76-312
Cow position: chr12:5905996-5905760 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 65, 85

Conread position: 76-316
Cow position: chr12:44622299-44622058 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 9, 150

Conread position: 76-430
Cow position: chr12:6720265-6719898 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 241
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 75, 201

Conread position: 77-312
Cow position: chr12:29694105-29694334 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 66, 118

Conread position: 78-418
Cow position: chr12:46333288-46332965 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 232
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 307, 15

Conread position: 79-395
Cow position: chr12:28010961-28011289 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 71, 24

Conread position: 79-431
Cow position: chr12:6226712-6227052 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 243
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 64, 14

Conread position: 80-468
Cow position: chr12:45541671-45541273 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 97

Conread position: 82-312
Cow position: chr12:30805789-30805558 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 59, 10

Conread position: 82-404
Cow position: chr12:30753658-30753327 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 243
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 69, 11

Conread position: 90-432
Cow position: chr12:38010132-38010480 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 241
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 60, 9

Conread position: 90-433
Cow position: chr12:7205686-7206032 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 242
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 51, 63

Conread position: 90-477
Cow position: chr12:794487-794058 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 212

Conread position: 90-477
Cow position: chr12:3212256-3211853 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 267

Conread position: 91-242
Cow position: chr12:35985065-35984901 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 41, 0

Conread position: 91-312
Cow position: chr12:40270165-40270383 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 168
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 47, 61

Conread position: 91-383
Cow position: chr12:25561297-25560997 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 212
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 121, 0

Conread position: 91-383
Cow position: chr12:32987627-32987323 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 216
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 50, 207

Conread position: 91-400
Cow position: chr12:30438170-30437856 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 231
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 9, 48

Conread position: 91-423
Cow position: chr12:24440745-24440394 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 243
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 50, 8

Conread position: 91-437
Cow position: chr12:45555493-45555848 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 245
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 122, 64

Conread position: 92-233
Cow position: chr12:21861859-21862005 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 47, 106

Conread position: 93-420
Cow position: chr12:26868869-26869210 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 248
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 57, 186

Conread position: 94-286
Cow position: chr12:15530982-15530789 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 135
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 57, 129

Conread position: 95-315
Cow position: chr12:15622523-15622756 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 175
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 43, 194

Conread position: 98-391
Cow position: chr12:13964864-13965155 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 201
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 113, 50

Conread position: 99-477
Cow position: chr12:19869388-19869003 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 78

Conread position: 103-477
Cow position: chr12:11836146-11835778 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 111

Conread position: 111-312
Cow position: chr12:15232196-15231992 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 11, 179

Conread position: 116-309
Cow position: chr12:11498161-11498358 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 20, 122

Conread position: 129-477
Cow position: chr12:748127-747773 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 252
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 33, 9

Conread position: 132-477
Cow position: chr12:4593990-4593632 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 242
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 147

Conread position: 134-300
Cow position: chr12:7131715-7131878 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 79, 51

Conread position: 315-477
Cow position: chr12:11498400-11498556 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 316-477
Cow position: chr12:27365307-27365146 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 60, 46

Conread position: 318-477
Cow position: chr12:28650612-28650452 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 67, 111

Conread position: 319-477
Cow position: chr12:18769418-18769576 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 66, 39

Conread position: 320-477
Cow position: chr12:17663901-17663742 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 65, 109

Conread position: 334-477
Cow position: chr12:43944877-43945020 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 51, 95

Show alignments to all cow chromosomes.