Cow genome map

Conread name: Pig1-117N15

Conread position: 32-213
Cow position: chr23:6031901-6031724 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 49, 87

Conread position: 34-306
Cow position: chr23:37224043-37224317 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 104

Conread position: 34-476
Cow position: chr23:40862369-40861932 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 262

Conread position: 40-244
Cow position: chr23:16793603-16793406 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 160
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 44, 50

Conread position: 40-335
Cow position: chr23:20171596-20171293 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 219
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 15, 21

Conread position: 41-267
Cow position: chr23:32662596-32662360 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 182
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 45, 122

Conread position: 41-283
Cow position: chr23:30307924-30307677 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 42, 28

Conread position: 41-283
Cow position: chr23:40891378-40891130 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 177
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 40, 146

Conread position: 41-303
Cow position: chr23:20781838-20781576 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 193
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 47, 123

Conread position: 41-309
Cow position: chr23:16237234-16237513 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 215
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 44, 27

Conread position: 41-311
Cow position: chr23:29345748-29346015 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 193
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 96, 47

Conread position: 41-312
Cow position: chr23:17092481-17092745 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 206
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 44, 27

Conread position: 41-312
Cow position: chr23:29272131-29271860 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 199
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 170, 47

Conread position: 41-316
Cow position: chr23:7550637-7550910 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 197
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 46, 61

Conread position: 41-370
Cow position: chr23:20753032-20752692 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 251

Conread position: 41-408
Cow position: chr23:31607134-31607535 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 58

Conread position: 41-414
Cow position: chr23:38455163-38455553 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 254

Conread position: 41-430
Cow position: chr23:39806888-39806477 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 17

Conread position: 41-430
Cow position: chr23:41285935-41285553 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 15

Conread position: 41-453
Cow position: chr23:40525967-40526376 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 62

Conread position: 41-463
Cow position: chr23:19636244-19636680 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 19

Conread position: 41-471
Cow position: chr23:3715777-3715363 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 302
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 95, 34

Conread position: 41-473
Cow position: chr23:777950-778382 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 306
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 38, 27

Conread position: 41-477
Cow position: chr23:1670918-1670494 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 287
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 265, 39

Conread position: 41-477
Cow position: chr23:9711575-9712030 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 44

Conread position: 41-477
Cow position: chr23:36128893-36129322 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 32

Conread position: 41-478
Cow position: chr23:16609790-16610240 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 252

Conread position: 42-306
Cow position: chr23:30210329-30210600 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 199
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 40, 13

Conread position: 42-309
Cow position: chr23:41589900-41590163 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 90

Conread position: 43-199
Cow position: chr23:2956194-2956038 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 125, 36

Conread position: 43-308
Cow position: chr23:26067127-26066867 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 198
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 53, 90

Conread position: 43-324
Cow position: chr23:15872680-15872970 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 203
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 44, 248

Conread position: 43-356
Cow position: chr23:22660568-22660873 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 64

Conread position: 43-417
Cow position: chr23:25408846-25408465 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 260
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 41, 8

Conread position: 43-477
Cow position: chr23:14126584-14126131 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 87

Conread position: 44-225
Cow position: chr23:28894941-28895132 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 42, 146

Conread position: 45-273
Cow position: chr23:1068304-1068534 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 162
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 96, 42

Conread position: 45-302
Cow position: chr23:27544841-27544583 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 181
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 11, 54

Conread position: 45-477
Cow position: chr23:36309434-36308994 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 310
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 96, 222

Conread position: 49-477
Cow position: chr23:3745620-3745184 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 14

Conread position: 51-217
Cow position: chr23:21659952-21659782 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 137
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 31, 0

Conread position: 51-256
Cow position: chr23:35177326-35177113 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 37, 116

Conread position: 52-314
Cow position: chr23:12369377-12369639 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 187
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 89, 51

Conread position: 53-471
Cow position: chr23:7751188-7750770 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 288
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 34, 86

Conread position: 55-476
Cow position: chr23:10014542-10014124 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 38

Conread position: 57-192
Cow position: chr23:496374-496513 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 60-312
Cow position: chr23:22588266-22588527 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 236

Conread position: 66-296
Cow position: chr23:25407456-25407695 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 72, 99

Conread position: 66-312
Cow position: chr23:20056873-20057124 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 25, 226

Conread position: 68-383
Cow position: chr23:37065833-37065507 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 232
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 73, 228

Conread position: 68-443
Cow position: chr23:23470927-23470550 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 70

Conread position: 73-221
Cow position: chr23:40651478-40651627 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 95, 72

Conread position: 75-438
Cow position: chr23:18492150-18491778 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 270
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 92, 57

Conread position: 75-454
Cow position: chr23:14862461-14862836 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 257
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 65, 17

Conread position: 76-245
Cow position: chr23:30773695-30773872 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 143
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 65, 0

Conread position: 76-290
Cow position: chr23:7063535-7063745 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 108, 62

Conread position: 76-309
Cow position: chr23:16881182-16881414 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 75, 22

Conread position: 76-430
Cow position: chr23:7845273-7844903 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 261
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 65, 15

Conread position: 76-477
Cow position: chr23:534211-533803 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 209

Conread position: 76-477
Cow position: chr23:11473525-11473928 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 93

Conread position: 76-477
Cow position: chr23:14191534-14191128 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 285
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 62, 15

Conread position: 76-516
Cow position: chr23:34348307-34347870 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 303
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 62, 14

Conread position: 77-310
Cow position: chr23:21452749-21452988 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 27, 216

Conread position: 77-312
Cow position: chr23:1991446-1991684 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 20, 102

Conread position: 77-315
Cow position: chr23:1605657-1605419 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 164
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 61, 10

Conread position: 77-476
Cow position: chr23:406191-406578 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 278
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 239, 74

Conread position: 78-423
Cow position: chr23:344194-344553 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 216

Conread position: 79-310
Cow position: chr23:26632786-26632545 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 171
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 16, 220

Conread position: 79-421
Cow position: chr23:13599324-13598978 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 243
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 72, 202

Conread position: 79-477
Cow position: chr23:37190606-37191005 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 53

Conread position: 83-383
Cow position: chr23:5162402-5162093 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 60, 9

Conread position: 87-404
Cow position: chr23:11404283-11404619 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 241
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 10, 314

Conread position: 92-404
Cow position: chr23:9734381-9734061 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 225
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 49, 193

Conread position: 93-310
Cow position: chr23:25531483-25531699 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 124, 44

Conread position: 93-477
Cow position: chr23:9641454-9641846 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 14

Conread position: 93-477
Cow position: chr23:25864728-25865108 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 72

Conread position: 98-303
Cow position: chr23:38248854-38248652 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 124, 40

Conread position: 99-298
Cow position: chr23:5706953-5706756 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 114, 55

Conread position: 99-310
Cow position: chr23:1877914-1878126 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 114, 189

Conread position: 99-422
Cow position: chr23:16700079-16700396 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 225
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 51, 192

Conread position: 99-477
Cow position: chr23:15710113-15710502 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 277
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 37, 155

Conread position: 102-430
Cow position: chr23:2470542-2470211 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 225
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 97, 190

Conread position: 107-312
Cow position: chr23:14662053-14662253 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 85

Conread position: 134-477
Cow position: chr23:14565794-14566153 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 251
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 40, 13

Conread position: 141-477
Cow position: chr23:35926507-35926175 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 238
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 33, 6

Conread position: 142-477
Cow position: chr23:20585801-20586143 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 145

Conread position: 167-484
Cow position: chr23:39740848-39741165 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 220
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 52, 102

Conread position: 184-477
Cow position: chr23:496738-497028 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 225
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 132, 25

Conread position: 273-473
Cow position: chr23:21394819-21395019 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 12, 31

Conread position: 298-477
Cow position: chr23:9806356-9806533 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 16, 113

Conread position: 310-477
Cow position: chr23:40890755-40890587 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 67, 113

Conread position: 318-477
Cow position: chr23:16237625-16237787 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 67, 111

Conread position: 318-477
Cow position: chr23:36462581-36462746 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 65, 138

Conread position: 320-477
Cow position: chr23:11813912-11814070 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 65, 111

Conread position: 321-477
Cow position: chr23:32662182-32662340 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 64, 118

Conread position: 322-473
Cow position: chr23:21659688-21659535 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 63, 107

Conread position: 324-477
Cow position: chr23:7221520-7221672 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 61, 30

Show alignments to all cow chromosomes.