Cow genome map

Conread name: Pig1-117N15

Conread position: 16-310
Cow position: chr25:8918246-8918537 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 207
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 197, 8

Conread position: 26-299
Cow position: chr25:16001497-16001769 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 194
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 29, 67

Conread position: 32-284
Cow position: chr25:15377347-15377097 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 18, 24

Conread position: 35-270
Cow position: chr25:17365241-17365479 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 49, 155

Conread position: 40-311
Cow position: chr25:12824005-12824274 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 186
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 53

Conread position: 40-417
Cow position: chr25:7641439-7641824 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 274
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 26, 15

Conread position: 40-423
Cow position: chr25:14791769-14791374 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 16

Conread position: 41-193
Cow position: chr25:16691676-16691522 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 100, 28

Conread position: 41-212
Cow position: chr25:9519332-9519164 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 44, 28

Conread position: 41-212
Cow position: chr25:36643943-36644109 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 158, 38

Conread position: 41-261
Cow position: chr25:33245934-33245720 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 155, 81

Conread position: 41-278
Cow position: chr25:29312323-29312572 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 47, 27

Conread position: 41-284
Cow position: chr25:8560880-8560633 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 29, 154

Conread position: 41-309
Cow position: chr25:28187934-28188206 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 190
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 100, 31

Conread position: 41-312
Cow position: chr25:24405722-24406001 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 51

Conread position: 41-312
Cow position: chr25:27534907-27535163 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 181
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 41-315
Cow position: chr25:33691570-33691290 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 39, 237

Conread position: 41-315
Cow position: chr25:34970476-34970215 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 200
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 100, 28

Conread position: 41-383
Cow position: chr25:20624920-20625267 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 82

Conread position: 41-416
Cow position: chr25:12239136-12239510 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 30

Conread position: 41-473
Cow position: chr25:8576705-8576270 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 100

Conread position: 41-477
Cow position: chr25:18161299-18160883 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 18

Conread position: 41-477
Cow position: chr25:23410679-23410231 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 254

Conread position: 42-194
Cow position: chr25:33111958-33112110 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 99, 26

Conread position: 42-216
Cow position: chr25:33411273-33411094 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 50

Conread position: 42-229
Cow position: chr25:26457667-26457865 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 154
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 42, 0

Conread position: 42-285
Cow position: chr25:11131594-11131344 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 170
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 22, 0

Conread position: 42-402
Cow position: chr25:40956974-40957347 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 202

Conread position: 42-476
Cow position: chr25:9349273-9349690 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 7

Conread position: 42-477
Cow position: chr25:22909846-22910298 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 322
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 167, 43

Conread position: 43-151
Cow position: chr25:107074-107184 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 93, 48

Conread position: 43-476
Cow position: chr25:14570384-14569936 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 162

Conread position: 43-477
Cow position: chr25:20076506-20076065 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 115

Conread position: 43-477
Cow position: chr25:24136427-24136883 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 95

Conread position: 45-379
Cow position: chr25:2126468-2126135 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 245
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 169, 35

Conread position: 45-380
Cow position: chr25:9957031-9957369 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 233
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 106, 27

Conread position: 49-474
Cow position: chr25:10748498-10748931 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 8

Conread position: 51-279
Cow position: chr25:8512086-8512325 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 185
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 40, 221

Conread position: 52-478
Cow position: chr25:29215387-29215838 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 58

Conread position: 55-301
Cow position: chr25:38135747-38135497 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 173
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 27, 236

Conread position: 55-432
Cow position: chr25:788261-787883 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 30

Conread position: 56-283
Cow position: chr25:22575520-22575756 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 9, 96

Conread position: 56-300
Cow position: chr25:15254344-15254583 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 20

Conread position: 58-312
Cow position: chr25:5836968-5837227 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 178
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 43

Conread position: 59-477
Cow position: chr25:37687184-37687585 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 31

Conread position: 61-477
Cow position: chr25:2136347-2135938 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 283
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 90, 219

Conread position: 64-477
Cow position: chr25:20496526-20496108 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 71

Conread position: 65-206
Cow position: chr25:36501248-36501392 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 76, 26

Conread position: 65-312
Cow position: chr25:17566573-17566326 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 73, 28

Conread position: 65-408
Cow position: chr25:6683076-6683427 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 241
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 156, 14

Conread position: 66-312
Cow position: chr25:24452189-24452429 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 172
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 147, 69

Conread position: 66-420
Cow position: chr25:36081863-36081518 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 251
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 75, 27

Conread position: 67-303
Cow position: chr25:22297033-22297269 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 83, 31

Conread position: 68-427
Cow position: chr25:12204455-12204082 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 24

Conread position: 73-473
Cow position: chr25:23829149-23829538 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 270
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 148, 64

Conread position: 74-303
Cow position: chr25:24669460-24669682 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 162
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 67, 19

Conread position: 75-312
Cow position: chr25:40321318-40321553 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 130, 58

Conread position: 75-423
Cow position: chr25:7216808-7216440 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 255
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 65, 28

Conread position: 76-212
Cow position: chr25:26679206-26679068 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 76-315
Cow position: chr25:36535460-36535696 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 168
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 67, 17

Conread position: 76-342
Cow position: chr25:8347487-8347212 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 198
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 62, 125

Conread position: 76-349
Cow position: chr25:15714849-15714577 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 202
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 137, 23

Conread position: 76-416
Cow position: chr25:32191647-32191294 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 244
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 30, 15

Conread position: 76-423
Cow position: chr25:26654887-26654526 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 263
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 65, 16

Conread position: 76-430
Cow position: chr25:3992761-3992400 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 252
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 138, 60

Conread position: 76-430
Cow position: chr25:30279232-30279598 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 255
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 133, 62

Conread position: 76-431
Cow position: chr25:40388484-40388843 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 254
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 20, 64

Conread position: 76-477
Cow position: chr25:10012067-10012482 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 220

Conread position: 78-212
Cow position: chr25:33141931-33142066 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 10, 89

Conread position: 80-477
Cow position: chr25:13333399-13332993 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 355

Conread position: 81-353
Cow position: chr25:25961935-25961654 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 38

Conread position: 81-477
Cow position: chr25:6891553-6891959 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 134

Conread position: 81-477
Cow position: chr25:36779470-36779069 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 278
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 55, 68

Conread position: 83-473
Cow position: chr25:13569200-13569596 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 275
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 58, 9

Conread position: 85-315
Cow position: chr25:16400293-16400514 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 79, 52

Conread position: 85-477
Cow position: chr25:24227370-24227773 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 46

Conread position: 86-477
Cow position: chr25:38358067-38357695 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 274
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 119, 51

Conread position: 90-282
Cow position: chr25:14467115-14467319 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 165
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 48, 182

Conread position: 90-477
Cow position: chr25:27504213-27504600 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 208

Conread position: 91-290
Cow position: chr25:15286578-15286782 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 50, 84

Conread position: 92-299
Cow position: chr25:4002763-4002548 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 49, 203

Conread position: 92-393
Cow position: chr25:38982065-38981755 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 209
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 51, 112

Conread position: 93-270
Cow position: chr25:16007755-16007567 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 48, 0

Conread position: 93-280
Cow position: chr25:20785623-20785816 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 87

Conread position: 95-212
Cow position: chr25:32606362-32606482 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 99-416
Cow position: chr25:20020044-20020343 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 223
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 284, 16

Conread position: 99-430
Cow position: chr25:22315154-22314811 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 238
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 101, 38

Conread position: 99-430
Cow position: chr25:35347863-35347515 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 248
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 42, 196

Conread position: 103-477
Cow position: chr25:4521885-4522244 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 271
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 35, 71

Conread position: 105-432
Cow position: chr25:21192985-21193333 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 246
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 33, 208

Conread position: 105-449
Cow position: chr25:26757386-26757025 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 251
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 95, 33

Conread position: 107-477
Cow position: chr25:1735366-1735743 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 58

Conread position: 111-477
Cow position: chr25:25866856-25866501 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 245
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 185, 27

Conread position: 125-307
Cow position: chr25:33260667-33260484 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 35

Conread position: 125-477
Cow position: chr25:18448769-18448402 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 50

Conread position: 222-482
Cow position: chr25:32606689-32606952 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 203
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 50, 31

Conread position: 315-473
Cow position: chr25:35296050-35296205 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 68, 31

Show alignments to all cow chromosomes.