Cow genome map

Conread name: Pig1-117N15

Conread position: 1-212
Cow position: chr27:14874542-14874753 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 30, 87

Conread position: 31-477
Cow position: chr27:26299775-26300222 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 20

Conread position: 35-315
Cow position: chr27:29039004-29038722 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 208
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 103, 121

Conread position: 40-233
Cow position: chr27:29679385-29679183 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 40-245
Cow position: chr27:19601320-19601528 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 8, 40

Conread position: 40-313
Cow position: chr27:11416390-11416659 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 44

Conread position: 40-477
Cow position: chr27:1353525-1353978 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 304
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 31, 200

Conread position: 41-215
Cow position: chr27:26226347-26226173 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 25, 31

Conread position: 41-253
Cow position: chr27:11356599-11356385 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 146
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 47, 97

Conread position: 41-268
Cow position: chr27:6159923-6160156 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 97, 151

Conread position: 41-284
Cow position: chr27:14937487-14937238 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 41-312
Cow position: chr27:3269411-3269661 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 39, 0

Conread position: 41-312
Cow position: chr27:25471082-25471359 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 198
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 101, 81

Conread position: 41-315
Cow position: chr27:10979806-10980082 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 186
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 25, 61

Conread position: 41-432
Cow position: chr27:25379933-25380341 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 282
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 9, 15

Conread position: 41-472
Cow position: chr27:27049968-27049542 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 117

Conread position: 41-473
Cow position: chr27:6454151-6454597 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 136

Conread position: 41-477
Cow position: chr27:26653251-26653691 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 313
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 129, 46

Conread position: 42-343
Cow position: chr27:26492758-26492448 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 18

Conread position: 42-473
Cow position: chr27:490838-491279 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 64

Conread position: 42-473
Cow position: chr27:8430495-8430044 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 27

Conread position: 43-170
Cow position: chr27:19083771-19083645 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 93, 111

Conread position: 43-263
Cow position: chr27:19637584-19637812 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 43, 99

Conread position: 43-283
Cow position: chr27:13005788-13006024 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 177
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 93, 43

Conread position: 43-315
Cow position: chr27:8048795-8048521 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 209
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 98, 43

Conread position: 44-477
Cow position: chr27:22418824-22418386 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 61

Conread position: 45-284
Cow position: chr27:6037068-6037313 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 181
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 48, 17

Conread position: 45-286
Cow position: chr27:18593214-18593462 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 171
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 47

Conread position: 50-477
Cow position: chr27:22330721-22330272 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 397

Conread position: 51-234
Cow position: chr27:16493533-16493712 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 134, 37

Conread position: 51-243
Cow position: chr27:12244173-12243986 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 161, 21

Conread position: 51-302
Cow position: chr27:27053247-27053502 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 181
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 90, 106

Conread position: 55-421
Cow position: chr27:13875685-13876060 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 269
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 30, 38

Conread position: 56-420
Cow position: chr27:31219207-31219569 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 245
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 27, 13

Conread position: 58-390
Cow position: chr27:16580577-16580914 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 238

Conread position: 60-471
Cow position: chr27:11723946-11723521 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 291
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 103, 90

Conread position: 61-212
Cow position: chr27:10086723-10086570 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 32, 118

Conread position: 61-253
Cow position: chr27:23600227-23600424 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 154
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 24, 55

Conread position: 61-313
Cow position: chr27:464917-465169 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 181
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 20, 164

Conread position: 64-206
Cow position: chr27:9692087-9691944 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 64-284
Cow position: chr27:20591946-20592174 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 29, 15

Conread position: 65-262
Cow position: chr27:22268469-22268673 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 149
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 76, 7

Conread position: 65-267
Cow position: chr27:27550774-27550574 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 76, 20

Conread position: 65-284
Cow position: chr27:23659372-23659150 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 170
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 20, 39

Conread position: 65-477
Cow position: chr27:1122999-1123403 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 281
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 76, 10

Conread position: 65-477
Cow position: chr27:17397486-17397073 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 295
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 23

Conread position: 66-423
Cow position: chr27:815332-815701 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 223

Conread position: 66-477
Cow position: chr27:30676876-30677300 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 14

Conread position: 69-212
Cow position: chr27:18948623-18948480 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 125
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 72, 18

Conread position: 72-311
Cow position: chr27:6620115-6620360 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 180
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 13, 221

Conread position: 73-312
Cow position: chr27:8230786-8231009 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 56, 0

Conread position: 75-312
Cow position: chr27:29019778-29019531 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 188
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 21, 102

Conread position: 75-315
Cow position: chr27:1183901-1183658 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 170
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 89, 17

Conread position: 75-467
Cow position: chr27:20510165-20510569 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 125

Conread position: 75-473
Cow position: chr27:30703103-30702706 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 127

Conread position: 76-315
Cow position: chr27:20795768-20796002 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 28, 74

Conread position: 76-477
Cow position: chr27:1636957-1636569 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 273
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 150, 11

Conread position: 76-477
Cow position: chr27:28907038-28907446 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 269
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 31

Conread position: 77-347
Cow position: chr27:23929953-23930220 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 10, 16

Conread position: 77-423
Cow position: chr27:16237890-16238232 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 258
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 204, 16

Conread position: 78-306
Cow position: chr27:25676204-25676443 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 60, 0

Conread position: 78-476
Cow position: chr27:17472786-17473200 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 294
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 13, 217

Conread position: 78-476
Cow position: chr27:30560892-30561307 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 203

Conread position: 79-477
Cow position: chr27:3730316-3729928 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 266
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 206, 35

Conread position: 80-369
Cow position: chr27:21138802-21139103 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 44, 97

Conread position: 81-283
Cow position: chr27:12596746-12596948 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 60, 138

Conread position: 82-312
Cow position: chr27:25292144-25292363 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 167
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 56, 107

Conread position: 82-328
Cow position: chr27:26441080-26440821 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 191
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 12, 0

Conread position: 82-477
Cow position: chr27:9090822-9090414 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 211

Conread position: 83-306
Cow position: chr27:27632623-27632400 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 54, 76

Conread position: 83-320
Cow position: chr27:706933-707172 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 11, 160

Conread position: 84-315
Cow position: chr27:26935924-26935700 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 129, 19

Conread position: 91-310
Cow position: chr27:16871922-16871706 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 50, 107

Conread position: 91-475
Cow position: chr27:16786818-16787212 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 269
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 83, 8

Conread position: 91-477
Cow position: chr27:19388005-19388407 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 275
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 5, 17

Conread position: 91-477
Cow position: chr27:27737935-27737548 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 271
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 47, 133

Conread position: 93-303
Cow position: chr27:1498310-1498520 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 149

Conread position: 93-432
Cow position: chr27:23455162-23454806 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 254
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 55, 196

Conread position: 93-477
Cow position: chr27:26224280-26223880 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 195

Conread position: 95-282
Cow position: chr27:6038591-6038779 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 45, 129

Conread position: 96-316
Cow position: chr27:22771747-22771978 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 168
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 45, 201

Conread position: 98-300
Cow position: chr27:11762736-11762536 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 95, 40

Conread position: 98-475
Cow position: chr27:19962475-19962860 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 261
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 65, 215

Conread position: 99-417
Cow position: chr27:8629874-8629544 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 239
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 44, 164

Conread position: 101-477
Cow position: chr27:21246420-21246792 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 266
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 179, 44

Conread position: 105-311
Cow position: chr27:22518638-22518842 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 98, 59

Conread position: 126-284
Cow position: chr27:11600975-11600823 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 94, 0

Conread position: 139-433
Cow position: chr27:25982669-25982370 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 209
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 63, 152

Conread position: 310-477
Cow position: chr27:2848134-2848302 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 75, 120

Conread position: 314-477
Cow position: chr27:23658510-23658352 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 71, 107

Conread position: 315-477
Cow position: chr27:24224361-24224198 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 70, 116

Conread position: 315-477
Cow position: chr27:30814678-30814843 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 70, 138

Conread position: 317-477
Cow position: chr27:8231236-8231400 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 58, 112

Conread position: 317-477
Cow position: chr27:21578349-21578185 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 18, 116

Conread position: 317-478
Cow position: chr27:25471388-25471547 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 68, 32

Conread position: 324-477
Cow position: chr27:30476293-30476450 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 61, 105

Conread position: 337-477
Cow position: chr27:18741313-18741169 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 48, 0

Show alignments to all cow chromosomes.