Cow genome map
| Conread name: | Pig1-117N15 | 
| Conread position: | 30-312 | 
| Cow position: | chr3:82075058-82075330 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 48, 40 | 
| Conread position: | 31-234 | 
| Cow position: | chr3:2198882-2198675 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 107, 48 | 
| Conread position: | 34-285 | 
| Cow position: | chr3:52650532-52650791 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 106, 0 | 
| Conread position: | 34-312 | 
| Cow position: | chr3:58174905-58174629 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 107, 191 | 
| Conread position: | 34-475 | 
| Cow position: | chr3:31907143-31907611 (view UCSC Genome Browser custom track) | 
| Alignm length: | 475 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 74 | 
| Conread position: | 35-300 | 
| Cow position: | chr3:74611563-74611292 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 253 | 
| Conread position: | 35-311 | 
| Cow position: | chr3:26493235-26493505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 83, 66 | 
| Conread position: | 35-312 | 
| Cow position: | chr3:74699387-74699677 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 49, 85 | 
| Conread position: | 35-477 | 
| Cow position: | chr3:68342253-68342708 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 75 | 
| Conread position: | 36-206 | 
| Cow position: | chr3:18107238-18107067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 105, 164 | 
| Conread position: | 37-315 | 
| Cow position: | chr3:19789121-19789404 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 13, 19 | 
| Conread position: | 38-306 | 
| Cow position: | chr3:45744694-45744437 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 46, 95 | 
| Conread position: | 39-289 | 
| Cow position: | chr3:73590003-73590260 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 11, 17 | 
| Conread position: | 39-300 | 
| Cow position: | chr3:79376263-79376005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 46, 148 | 
| Conread position: | 39-364 | 
| Cow position: | chr3:4223299-4222979 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 179, 46 | 
| Conread position: | 40-260 | 
| Cow position: | chr3:61009444-61009669 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 43, 28 | 
| Conread position: | 40-284 | 
| Cow position: | chr3:30008918-30009167 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 26, 101 | 
| Conread position: | 40-302 | 
| Cow position: | chr3:29596380-29596121 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 26, 64 | 
| Conread position: | 40-316 | 
| Cow position: | chr3:59206233-59205955 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 98, 30 | 
| Conread position: | 40-375 | 
| Cow position: | chr3:65058691-65058355 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 6, 47 | 
| Conread position: | 40-399 | 
| Cow position: | chr3:49460936-49461316 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 26, 55 | 
| Conread position: | 40-405 | 
| Cow position: | chr3:53592699-53593084 (view UCSC Genome Browser custom track) | 
| Alignm length: | 388 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 39, 244 | 
| Conread position: | 40-423 | 
| Cow position: | chr3:48241608-48241219 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 32 | 
| Conread position: | 40-475 | 
| Cow position: | chr3:33327699-33327238 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 399 | 
| Conread position: | 40-477 | 
| Cow position: | chr3:15954095-15954524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 26, 46 | 
| Conread position: | 40-477 | 
| Cow position: | chr3:58350570-58350129 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 28 | 
| Conread position: | 40-477 | 
| Cow position: | chr3:61539796-61539349 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 33 | 
| Conread position: | 40-477 | 
| Cow position: | chr3:67929270-67929719 (view UCSC Genome Browser custom track) | 
| Alignm length: | 466 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 111, 46 | 
| Conread position: | 41-151 | 
| Cow position: | chr3:36125584-36125695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 113 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 100, 31 | 
| Conread position: | 41-183 | 
| Cow position: | chr3:51492774-51492629 (view UCSC Genome Browser custom track) | 
| Alignm length: | 148 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 10, 15 | 
| Conread position: | 41-184 | 
| Cow position: | chr3:25250897-25250755 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 97, 19 | 
| Conread position: | 41-187 | 
| Cow position: | chr3:20878895-20879039 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 98, 0 | 
| Conread position: | 41-201 | 
| Cow position: | chr3:28478082-28477918 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 41-208 | 
| Cow position: | chr3:78647495-78647327 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 97, 31 | 
| Conread position: | 41-212 | 
| Cow position: | chr3:3736288-3736107 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 41-212 | 
| Cow position: | chr3:4082108-4082276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 97, 39 | 
| Conread position: | 41-242 | 
| Cow position: | chr3:74205815-74206020 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 41, 185 | 
| Conread position: | 41-252 | 
| Cow position: | chr3:61913580-61913375 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 97, 19 | 
| Conread position: | 41-260 | 
| Cow position: | chr3:71135781-71135555 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 100, 50 | 
| Conread position: | 41-275 | 
| Cow position: | chr3:55991875-55992120 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 94, 150 | 
| Conread position: | 41-280 | 
| Cow position: | chr3:18216776-18217018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 24, 100 | 
| Conread position: | 41-283 | 
| Cow position: | chr3:41718386-41718132 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 40, 127 | 
| Conread position: | 41-284 | 
| Cow position: | chr3:20092532-20092762 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 22, 17 | 
| Conread position: | 41-285 | 
| Cow position: | chr3:42480608-42480361 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 37, 51 | 
| Conread position: | 41-289 | 
| Cow position: | chr3:8393928-8393678 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 97, 150 | 
| Conread position: | 41-289 | 
| Cow position: | chr3:14625401-14625650 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 97, 53 | 
| Conread position: | 41-295 | 
| Cow position: | chr3:80084187-80084445 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 25, 11 | 
| Conread position: | 41-301 | 
| Cow position: | chr3:84000602-84000341 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 96, 44 | 
| Conread position: | 41-310 | 
| Cow position: | chr3:55124291-55124558 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 50, 98 | 
| Conread position: | 41-311 | 
| Cow position: | chr3:22171180-22170908 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 248 | 
| Conread position: | 41-311 | 
| Cow position: | chr3:52835894-52836183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 44, 255 | 
| Conread position: | 41-312 | 
| Cow position: | chr3:18458669-18458938 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 172, 53 | 
| Conread position: | 41-312 | 
| Cow position: | chr3:23091986-23092270 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 41-312 | 
| Cow position: | chr3:37452062-37451787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 39 | 
| Conread position: | 41-312 | 
| Cow position: | chr3:42594663-42594938 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 38, 66 | 
| Conread position: | 41-312 | 
| Cow position: | chr3:54862423-54862706 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 258 | 
| Conread position: | 41-312 | 
| Cow position: | chr3:56637654-56637384 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 97, 44 | 
| Conread position: | 41-312 | 
| Cow position: | chr3:58130985-58130718 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 42, 88 | 
| Conread position: | 41-312 | 
| Cow position: | chr3:62884197-62883920 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 134 | 
| Conread position: | 41-312 | 
| Cow position: | chr3:77225108-77224838 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 44, 117 | 
| Conread position: | 41-342 | 
| Cow position: | chr3:48629600-48629898 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 42, 150 | 
| Conread position: | 41-383 | 
| Cow position: | chr3:60597533-60597195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 123, 163 | 
| Conread position: | 41-408 | 
| Cow position: | chr3:50462330-50461952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 51 | 
| Conread position: | 41-423 | 
| Cow position: | chr3:46350663-46350239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 9, 15 | 
| Conread position: | 41-423 | 
| Cow position: | chr3:59000763-59001143 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 170, 51 | 
| Conread position: | 41-430 | 
| Cow position: | chr3:15051959-15052339 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 9, 15 | 
| Conread position: | 41-430 | 
| Cow position: | chr3:23169075-23169481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 14 | 
| Conread position: | 41-433 | 
| Cow position: | chr3:61840268-61839878 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 9, 15 | 
| Conread position: | 41-458 | 
| Cow position: | chr3:51146677-51147100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 11 | 
| Conread position: | 41-469 | 
| Cow position: | chr3:42563446-42563009 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 72 | 
| Conread position: | 41-472 | 
| Cow position: | chr3:42489312-42489764 (view UCSC Genome Browser custom track) | 
| Alignm length: | 460 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 40, 228 | 
| Conread position: | 41-476 | 
| Cow position: | chr3:29807456-29807017 (view UCSC Genome Browser custom track) | 
| Alignm length: | 456 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 26, 53 | 
| Conread position: | 41-476 | 
| Cow position: | chr3:58865479-58865930 (view UCSC Genome Browser custom track) | 
| Alignm length: | 464 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 50 | 
| Conread position: | 41-477 | 
| Cow position: | chr3:15684932-15685354 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 79 | 
| Conread position: | 41-477 | 
| Cow position: | chr3:37186816-37186388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 43 | 
| Conread position: | 41-477 | 
| Cow position: | chr3:51255777-51255313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 472 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 9 | 
| Conread position: | 41-477 | 
| Cow position: | chr3:53091480-53091064 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 333, 39 | 
| Conread position: | 41-477 | 
| Cow position: | chr3:53588394-53588847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 30 | 
| Conread position: | 41-478 | 
| Cow position: | chr3:75479992-75479570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 30, 35 | 
| Conread position: | 42-210 | 
| Cow position: | chr3:61322833-61322669 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 43, 0 | 
| Conread position: | 42-251 | 
| Cow position: | chr3:56711651-56711859 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 51, 179 | 
| Conread position: | 42-284 | 
| Cow position: | chr3:22820560-22820312 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 46, 0 | 
| Conread position: | 42-284 | 
| Cow position: | chr3:68262752-68262523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 144, 36 | 
| Conread position: | 42-311 | 
| Cow position: | chr3:63147162-63147425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 12, 95 | 
| Conread position: | 42-312 | 
| Cow position: | chr3:5097195-5096921 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 99, 45 | 
| Conread position: | 42-312 | 
| Cow position: | chr3:34038200-34038470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 9, 19 | 
| Conread position: | 42-338 | 
| Cow position: | chr3:78530525-78530228 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 49, 114 | 
| Conread position: | 42-473 | 
| Cow position: | chr3:12255469-12255030 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 134 | 
| Conread position: | 42-476 | 
| Cow position: | chr3:50347953-50347547 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 97, 36 | 
| Conread position: | 42-477 | 
| Cow position: | chr3:5419871-5420323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 135 | 
| Conread position: | 42-477 | 
| Cow position: | chr3:8753448-8753009 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 59, 30 | 
| Conread position: | 42-477 | 
| Cow position: | chr3:9843575-9843126 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 51 | 
| Conread position: | 42-477 | 
| Cow position: | chr3:49337714-49337261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 28 | 
| Conread position: | 42-477 | 
| Cow position: | chr3:54434965-54434525 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 127, 112 | 
| Conread position: | 42-477 | 
| Cow position: | chr3:83442666-83443090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 43, 18 | 
| Conread position: | 43-281 | 
| Cow position: | chr3:27785257-27785022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 154, 56 | 
| Conread position: | 43-295 | 
| Cow position: | chr3:7365901-7366142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 175, 41 | 
| Conread position: | 43-306 | 
| Cow position: | chr3:56703863-56704130 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 43, 115 | 
| Conread position: | 43-312 | 
| Cow position: | chr3:36100826-36100546 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 41, 250 | 
| Conread position: | 43-373 | 
| Cow position: | chr3:66708079-66708421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 264 | 
| Conread position: | 43-412 | 
| Cow position: | chr3:42584530-42584139 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 115, 95 | 
| Conread position: | 43-483 | 
| Cow position: | chr3:53538506-53538060 (view UCSC Genome Browser custom track) | 
| Alignm length: | 466 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 16 | 
| Conread position: | 44-212 | 
| Cow position: | chr3:55778024-55777856 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 38, 120 | 
| Conread position: | 44-286 | 
| Cow position: | chr3:60854849-60855099 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 44, 26 | 
| Conread position: | 45-260 | 
| Cow position: | chr3:67930196-67930411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 11, 50 | 
| Conread position: | 47-210 | 
| Cow position: | chr3:27634028-27634193 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 94, 129 | 
| Conread position: | 47-280 | 
| Cow position: | chr3:47524521-47524760 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 20, 39 | 
| Conread position: | 48-312 | 
| Cow position: | chr3:63203411-63203163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 93, 31 | 
| Conread position: | 50-475 | 
| Cow position: | chr3:43657725-43658165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 111 | 
| Conread position: | 51-209 | 
| Cow position: | chr3:50281772-50281936 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 86, 17 | 
| Conread position: | 51-283 | 
| Cow position: | chr3:55445340-55445108 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 90, 21 | 
| Conread position: | 51-284 | 
| Cow position: | chr3:8061102-8060875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 90, 17 | 
| Conread position: | 51-315 | 
| Cow position: | chr3:52722030-52722282 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 162, 87 | 
| Conread position: | 51-421 | 
| Cow position: | chr3:7566444-7566815 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 162, 17 | 
| Conread position: | 51-477 | 
| Cow position: | chr3:23945081-23944668 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 125 | 
| Conread position: | 51-477 | 
| Cow position: | chr3:42461679-42461239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 17 | 
| Conread position: | 52-284 | 
| Cow position: | chr3:8924026-8923786 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 89, 110 | 
| Conread position: | 52-312 | 
| Cow position: | chr3:81473992-81473722 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 41, 145 | 
| Conread position: | 54-315 | 
| Cow position: | chr3:67704522-67704255 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 37, 239 | 
| Conread position: | 55-312 | 
| Cow position: | chr3:39171505-39171766 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 15, 40 | 
| Conread position: | 55-312 | 
| Cow position: | chr3:78945856-78946121 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 36, 83 | 
| Conread position: | 55-329 | 
| Cow position: | chr3:66292201-66292479 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 86, 54 | 
| Conread position: | 55-383 | 
| Cow position: | chr3:28908228-28908562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 256, 37 | 
| Conread position: | 55-477 | 
| Cow position: | chr3:38497916-38497487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 83, 5 | 
| Conread position: | 56-339 | 
| Cow position: | chr3:34315980-34316267 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 241 | 
| Conread position: | 57-212 | 
| Cow position: | chr3:2810267-2810425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 28, 135 | 
| Conread position: | 57-312 | 
| Cow position: | chr3:32870124-32869867 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 232 | 
| Conread position: | 60-442 | 
| Cow position: | chr3:46094805-46094404 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 81, 25 | 
| Conread position: | 60-476 | 
| Cow position: | chr3:66738745-66738319 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 151, 72 | 
| Conread position: | 60-477 | 
| Cow position: | chr3:26553741-26554170 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 102 | 
| Conread position: | 61-430 | 
| Cow position: | chr3:59799214-59798843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 79, 9 | 
| Conread position: | 62-312 | 
| Cow position: | chr3:19006631-19006385 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 18, 74 | 
| Conread position: | 62-315 | 
| Cow position: | chr3:65581048-65581301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 107, 8 | 
| Conread position: | 63-477 | 
| Cow position: | chr3:4050163-4049754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 433 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 87, 29 | 
| Conread position: | 64-232 | 
| Cow position: | chr3:12576331-12576505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 22, 142 | 
| Conread position: | 64-468 | 
| Cow position: | chr3:36174099-36174520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 227 | 
| Conread position: | 64-477 | 
| Cow position: | chr3:76188651-76188243 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 27 | 
| Conread position: | 65-413 | 
| Cow position: | chr3:17695038-17695396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 134, 27 | 
| Conread position: | 66-319 | 
| Cow position: | chr3:8457621-8457369 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 147, 84 | 
| Conread position: | 66-477 | 
| Cow position: | chr3:15655181-15655600 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 22 | 
| Conread position: | 67-310 | 
| Cow position: | chr3:75158325-75158085 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 74, 149 | 
| Conread position: | 67-342 | 
| Cow position: | chr3:82657121-82657403 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 81, 26 | 
| Conread position: | 67-421 | 
| Cow position: | chr3:14465748-14466105 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 6, 26 | 
| Conread position: | 67-439 | 
| Cow position: | chr3:19717126-19717502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 131, 71 | 
| Conread position: | 68-317 | 
| Cow position: | chr3:77365333-77365581 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 26, 7 | 
| Conread position: | 68-391 | 
| Cow position: | chr3:48211453-48211141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 70, 37 | 
| Conread position: | 71-315 | 
| Cow position: | chr3:23111542-23111789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 20, 75 | 
| Conread position: | 71-477 | 
| Cow position: | chr3:80053578-80053987 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 21 | 
| Conread position: | 72-368 | 
| Cow position: | chr3:3457880-3457565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 62, 0 | 
| Conread position: | 75-201 | 
| Cow position: | chr3:48375052-48374923 (view UCSC Genome Browser custom track) | 
| Alignm length: | 131 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 12, 88 | 
| Conread position: | 75-217 | 
| Cow position: | chr3:70609580-70609440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 143 | 
| Alignm identity: | 105 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 23, 0 | 
| Conread position: | 75-289 | 
| Cow position: | chr3:4087206-4087429 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 60, 0 | 
| Conread position: | 75-308 | 
| Cow position: | chr3:32399297-32399533 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 61, 121 | 
| Conread position: | 75-328 | 
| Cow position: | chr3:51228129-51227858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 19, 132 | 
| Conread position: | 75-477 | 
| Cow position: | chr3:82474018-82473591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 370 | 
| Conread position: | 76-212 | 
| Cow position: | chr3:18757819-18757954 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 83, 0 | 
| Conread position: | 76-247 | 
| Cow position: | chr3:63039088-63038916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 12, 102 | 
| Conread position: | 76-277 | 
| Cow position: | chr3:15752681-15752878 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 142, 11 | 
| Conread position: | 76-283 | 
| Cow position: | chr3:68627730-68627931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 78, 0 | 
| Conread position: | 76-285 | 
| Cow position: | chr3:74409439-74409233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 62, 122 | 
| Conread position: | 76-477 | 
| Cow position: | chr3:48296666-48296257 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 33 | 
| Conread position: | 76-477 | 
| Cow position: | chr3:61190970-61191364 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 138, 23 | 
| Conread position: | 77-310 | 
| Cow position: | chr3:11949398-11949633 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 46 | 
| Conread position: | 77-338 | 
| Cow position: | chr3:53790582-53790858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 66, 10 | 
| Conread position: | 77-477 | 
| Cow position: | chr3:42603785-42603374 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 20 | 
| Conread position: | 78-250 | 
| Cow position: | chr3:60265285-60265459 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 15, 137 | 
| Conread position: | 78-262 | 
| Cow position: | chr3:27274483-27274298 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 135, 20 | 
| Conread position: | 78-365 | 
| Cow position: | chr3:22953904-22954190 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 131, 67 | 
| Conread position: | 78-377 | 
| Cow position: | chr3:12324029-12323715 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 58, 176 | 
| Conread position: | 78-473 | 
| Cow position: | chr3:2630749-2630351 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 73, 145 | 
| Conread position: | 79-212 | 
| Cow position: | chr3:25079697-25079565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 62, 33 | 
| Conread position: | 79-477 | 
| Cow position: | chr3:49218359-49218756 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 146 | 
| Conread position: | 80-430 | 
| Cow position: | chr3:15057656-15058020 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 237, 111 | 
| Conread position: | 81-212 | 
| Cow position: | chr3:8790639-8790772 (view UCSC Genome Browser custom track) | 
| Alignm length: | 134 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 81-289 | 
| Cow position: | chr3:63237808-63238005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 81-312 | 
| Cow position: | chr3:25691704-25691467 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 60, 12 | 
| Conread position: | 81-477 | 
| Cow position: | chr3:58540576-58540987 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 69, 11 | 
| Conread position: | 81-477 | 
| Cow position: | chr3:77188388-77188002 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 38, 18 | 
| Conread position: | 82-416 | 
| Cow position: | chr3:80581617-80581281 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 117 | 
| Conread position: | 82-423 | 
| Cow position: | chr3:71231350-71231003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 6, 117 | 
| Conread position: | 82-477 | 
| Cow position: | chr3:40231865-40231481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 232, 11 | 
| Conread position: | 83-314 | 
| Cow position: | chr3:20437702-20437929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 55, 91 | 
| Conread position: | 83-358 | 
| Cow position: | chr3:78077139-78076858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 128, 54 | 
| Conread position: | 84-310 | 
| Cow position: | chr3:73777233-73776998 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 51, 188 | 
| Conread position: | 85-310 | 
| Cow position: | chr3:57764176-57763943 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 11, 210 | 
| Conread position: | 87-312 | 
| Cow position: | chr3:15158988-15158759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 55, 204 | 
| Conread position: | 87-430 | 
| Cow position: | chr3:2506530-2506890 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 0 | 
| Conread position: | 88-303 | 
| Cow position: | chr3:53509740-53509960 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 61, 80 | 
| Conread position: | 88-477 | 
| Cow position: | chr3:66978781-66978386 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 49 | 
| Conread position: | 89-315 | 
| Cow position: | chr3:4031914-4031683 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 52, 203 | 
| Conread position: | 90-212 | 
| Cow position: | chr3:83396139-83396015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 125 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 50, 0 | 
| Conread position: | 90-315 | 
| Cow position: | chr3:66116168-66116397 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 51, 201 | 
| Conread position: | 90-328 | 
| Cow position: | chr3:3063679-3063457 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 202, 41 | 
| Conread position: | 91-267 | 
| Cow position: | chr3:44932454-44932268 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 59, 0 | 
| Conread position: | 91-303 | 
| Cow position: | chr3:54946070-54945852 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 52, 189 | 
| Conread position: | 91-311 | 
| Cow position: | chr3:17742446-17742228 (view UCSC Genome Browser custom track) | 
| Alignm length: | 229 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 127, 40 | 
| Conread position: | 91-378 | 
| Cow position: | chr3:17222204-17222504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 51, 38 | 
| Conread position: | 91-425 | 
| Cow position: | chr3:55189815-55190145 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 60, 124 | 
| Conread position: | 91-430 | 
| Cow position: | chr3:70565796-70566149 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 47, 58 | 
| Conread position: | 91-477 | 
| Cow position: | chr3:23476944-23476554 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 205 | 
| Conread position: | 91-477 | 
| Cow position: | chr3:26219110-26219508 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 106, 203 | 
| Conread position: | 92-285 | 
| Cow position: | chr3:52652141-52652332 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 109, 54 | 
| Conread position: | 92-330 | 
| Cow position: | chr3:70401842-70401597 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 58, 77 | 
| Conread position: | 92-398 | 
| Cow position: | chr3:13353302-13352982 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 49, 210 | 
| Conread position: | 92-416 | 
| Cow position: | chr3:13899505-13899850 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 58, 205 | 
| Conread position: | 92-422 | 
| Cow position: | chr3:42178099-42177754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 51, 185 | 
| Conread position: | 92-439 | 
| Cow position: | chr3:68586961-68586626 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 58, 73 | 
| Conread position: | 92-475 | 
| Cow position: | chr3:65969102-65968709 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 51, 204 | 
| Conread position: | 92-477 | 
| Cow position: | chr3:27544392-27544787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 78 | 
| Conread position: | 93-306 | 
| Cow position: | chr3:16809845-16810067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 48, 203 | 
| Conread position: | 93-310 | 
| Cow position: | chr3:17284785-17284556 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 47, 87 | 
| Conread position: | 93-310 | 
| Cow position: | chr3:67744687-67744908 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 120, 45 | 
| Conread position: | 93-311 | 
| Cow position: | chr3:32596987-32597209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 48, 198 | 
| Conread position: | 93-475 | 
| Cow position: | chr3:33632952-33633322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 388 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 130, 82 | 
| Conread position: | 93-477 | 
| Cow position: | chr3:27867761-27867374 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 48, 65 | 
| Conread position: | 93-477 | 
| Cow position: | chr3:74561470-74561850 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 99 | 
| Conread position: | 94-284 | 
| Cow position: | chr3:48433889-48433688 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 94-341 | 
| Cow position: | chr3:53113112-53112851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 47, 201 | 
| Conread position: | 95-315 | 
| Cow position: | chr3:56059745-56059522 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 43, 182 | 
| Conread position: | 95-477 | 
| Cow position: | chr3:81371584-81371208 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 11, 127 | 
| Conread position: | 98-413 | 
| Cow position: | chr3:8717187-8716854 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 53, 176 | 
| Conread position: | 98-477 | 
| Cow position: | chr3:14626222-14626604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 119 | 
| Conread position: | 99-234 | 
| Cow position: | chr3:15977103-15976961 (view UCSC Genome Browser custom track) | 
| Alignm length: | 143 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 99-350 | 
| Cow position: | chr3:83921131-83920875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 65, 39 | 
| Conread position: | 99-477 | 
| Cow position: | chr3:72391019-72390635 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 44, 198 | 
| Conread position: | 100-283 | 
| Cow position: | chr3:23270031-23269846 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 41, 120 | 
| Conread position: | 100-302 | 
| Cow position: | chr3:70899827-70899628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 41, 102 | 
| Conread position: | 100-447 | 
| Cow position: | chr3:6853572-6853931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 41, 104 | 
| Conread position: | 101-476 | 
| Cow position: | chr3:70129879-70130271 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 37, 67 | 
| Conread position: | 102-477 | 
| Cow position: | chr3:58383897-58383514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 31, 45 | 
| Conread position: | 103-380 | 
| Cow position: | chr3:53150258-53149970 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 47, 84 | 
| Conread position: | 103-423 | 
| Cow position: | chr3:50768612-50768272 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 48, 186 | 
| Conread position: | 105-400 | 
| Cow position: | chr3:65771380-65771691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 107-312 | 
| Cow position: | chr3:55815264-55815062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 32, 58 | 
| Conread position: | 107-477 | 
| Cow position: | chr3:70913151-70913541 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 333 | 
| Conread position: | 108-477 | 
| Cow position: | chr3:64536626-64536997 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 64 | 
| Conread position: | 111-263 | 
| Cow position: | chr3:4861609-4861453 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 27, 36 | 
| Conread position: | 125-477 | 
| Cow position: | chr3:78546189-78546549 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 12 | 
| Conread position: | 155-476 | 
| Cow position: | chr3:27453522-27453842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 63, 125 | 
| Conread position: | 157-473 | 
| Cow position: | chr3:6799137-6799455 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 157, 16 | 
| Conread position: | 158-477 | 
| Cow position: | chr3:24639466-24639129 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 12, 137 | 
| Conread position: | 159-477 | 
| Cow position: | chr3:19109608-19109285 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 54, 114 | 
| Conread position: | 177-477 | 
| Cow position: | chr3:45183994-45184287 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 46, 96 | 
| Conread position: | 180-477 | 
| Cow position: | chr3:22354005-22353682 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 34, 102 | 
| Conread position: | 237-477 | 
| Cow position: | chr3:17899610-17899370 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 86, 49 | 
| Conread position: | 241-477 | 
| Cow position: | chr3:20780097-20780330 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 144, 57 | 
| Conread position: | 297-477 | 
| Cow position: | chr3:8752440-8752258 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 9, 133 | 
| Conread position: | 310-477 | 
| Cow position: | chr3:32869835-32869664 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 75, 120 | 
| Conread position: | 310-477 | 
| Cow position: | chr3:73936311-73936481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 74, 125 | 
| Conread position: | 314-476 | 
| Cow position: | chr3:25090605-25090443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 71, 41 | 
| Conread position: | 314-477 | 
| Cow position: | chr3:78646975-78646808 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 71, 115 | 
| Conread position: | 314-484 | 
| Cow position: | chr3:46332770-46332943 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 74, 40 | 
| Conread position: | 315-477 | 
| Cow position: | chr3:62883686-62883525 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 70, 114 | 
| Conread position: | 315-477 | 
| Cow position: | chr3:64318611-64318446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 62, 93 | 
| Conread position: | 317-477 | 
| Cow position: | chr3:43425008-43424851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 67, 29 | 
| Conread position: | 319-477 | 
| Cow position: | chr3:26659634-26659795 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 64, 54 | 
| Conread position: | 319-477 | 
| Cow position: | chr3:82075383-82075547 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 324-477 | 
| Cow position: | chr3:49428779-49428934 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 43, 105 | 
Show alignments to all cow chromosomes.
