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Cow genome map

           
Conread name:
           
Pig1-117N15
        

               
Conread position:
               
20-473
               

               
Cow position:
               
chrX:10437606-10438045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 72
               

               
Conread position:
               
31-312
               

               
Cow position:
               
chrX:28580274-28579989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
109, 9
               

               
Conread position:
               
34-251
               

               
Cow position:
               
chrX:46146514-46146735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
107, 134
               

               
Conread position:
               
34-329
               

               
Cow position:
               
chrX:7497290-7496990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
50, 132
               

               
Conread position:
               
34-475
               

               
Cow position:
               
chrX:32310152-32309698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 42
               

               
Conread position:
               
35-143
               

               
Cow position:
               
chrX:6633126-6633018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
35-212
               

               
Cow position:
               
chrX:21566453-21566271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
35-279
               

               
Cow position:
               
chrX:31340757-31340502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
50, 65
               

               
Conread position:
               
35-426
               

               
Cow position:
               
chrX:25232639-25232230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
35-432
               

               
Cow position:
               
chrX:34402046-34401637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
35-477
               

               
Cow position:
               
chrX:630263-630706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 42
               

               
Conread position:
               
35-477
               

               
Cow position:
               
chrX:28111556-28111096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 257
               

               
Conread position:
               
36-306
               

               
Cow position:
               
chrX:39558303-39558574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 20
               

               
Conread position:
               
36-476
               

               
Cow position:
               
chrX:35224341-35223905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
12, 19
               

               
Conread position:
               
36-477
               

               
Cow position:
               
chrX:7571950-7571505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 129
               

               
Conread position:
               
39-230
               

               
Cow position:
               
chrX:29056160-29055966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
174, 111
               

               
Conread position:
               
40-289
               

               
Cow position:
               
chrX:33000946-33000690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 53
               

               
Conread position:
               
40-303
               

               
Cow position:
               
chrX:29509397-29509667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
27, 53
               

               
Conread position:
               
40-312
               

               
Cow position:
               
chrX:17231776-17231502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 53
               

               
Conread position:
               
40-383
               

               
Cow position:
               
chrX:28845874-28845535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
64, 52
               

               
Conread position:
               
40-384
               

               
Cow position:
               
chrX:14925041-14924690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 51
               

               
Conread position:
               
40-417
               

               
Cow position:
               
chrX:47344337-47343945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
26, 53
               

               
Conread position:
               
40-431
               

               
Cow position:
               
chrX:40826710-40827108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
45, 59
               

               
Conread position:
               
40-462
               

               
Cow position:
               
chrX:45199852-45200278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
44, 59
               

               
Conread position:
               
40-477
               

               
Cow position:
               
chrX:8900068-8899627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
103, 52
               

               
Conread position:
               
40-477
               

               
Cow position:
               
chrX:33802962-33803419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 243
               

               
Conread position:
               
41-183
               

               
Cow position:
               
chrX:17895908-17896053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
41-191
               

               
Cow position:
               
chrX:18142413-18142565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
41-204
               

               
Cow position:
               
chrX:6656427-6656263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
47, 124
               

               
Conread position:
               
41-210
               

               
Cow position:
               
chrX:26493593-26493766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
41-212
               

               
Cow position:
               
chrX:18417550-18417720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
97, 19
               

               
Conread position:
               
41-212
               

               
Cow position:
               
chrX:24747354-24747523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
23, 90
               

               
Conread position:
               
41-212
               

               
Cow position:
               
chrX:39415330-39415498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
41-212
               

               
Cow position:
               
chrX:41070977-41070806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
42, 19
               

               
Conread position:
               
41-232
               

               
Cow position:
               
chrX:25193703-25193505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
41-253
               

               
Cow position:
               
chrX:38999896-38999667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
97, 47
               

               
Conread position:
               
41-283
               

               
Cow position:
               
chrX:157732-157982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
97, 235
               

               
Conread position:
               
41-284
               

               
Cow position:
               
chrX:2186294-2186051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
44, 51
               

               
Conread position:
               
41-300
               

               
Cow position:
               
chrX:9041204-9041449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
157, 47
               

               
Conread position:
               
41-300
               

               
Cow position:
               
chrX:29601788-29602053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
100, 239
               

               
Conread position:
               
41-301
               

               
Cow position:
               
chrX:7425510-7425244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
100, 56
               

               
Conread position:
               
41-309
               

               
Cow position:
               
chrX:6041169-6041424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
45, 161
               

               
Conread position:
               
41-309
               

               
Cow position:
               
chrX:40789252-40788975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 255
               

               
Conread position:
               
41-311
               

               
Cow position:
               
chrX:14900690-14900952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
75, 46
               

               
Conread position:
               
41-311
               

               
Cow position:
               
chrX:32431664-32431396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 110
               

               
Conread position:
               
41-312
               

               
Cow position:
               
chrX:6563564-6563280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
44, 229
               

               
Conread position:
               
41-312
               

               
Cow position:
               
chrX:17630763-17631034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
44, 118
               

               
Conread position:
               
41-312
               

               
Cow position:
               
chrX:24132110-24132383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
97, 39
               

               
Conread position:
               
41-312
               

               
Cow position:
               
chrX:27176272-27176552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
41, 73
               

               
Conread position:
               
41-312
               

               
Cow position:
               
chrX:38549485-38549216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
172, 44
               

               
Conread position:
               
41-312
               

               
Cow position:
               
chrX:38840924-38840656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
97, 13
               

               
Conread position:
               
41-312
               

               
Cow position:
               
chrX:40692711-40692970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
44, 51
               

               
Conread position:
               
41-315
               

               
Cow position:
               
chrX:16283905-16284182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
24, 19
               

               
Conread position:
               
41-324
               

               
Cow position:
               
chrX:36961681-36961392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
95, 39
               

               
Conread position:
               
41-377
               

               
Cow position:
               
chrX:30133278-30133627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
41-380
               

               
Cow position:
               
chrX:11313740-11314084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 111
               

               
Conread position:
               
41-383
               

               
Cow position:
               
chrX:20377011-20376661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 244
               

               
Conread position:
               
41-383
               

               
Cow position:
               
chrX:25713836-25713500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
36, 69
               

               
Conread position:
               
41-390
               

               
Cow position:
               
chrX:9161621-9161268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 44
               

               
Conread position:
               
41-397
               

               
Cow position:
               
chrX:25338228-25337850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 256
               

               
Conread position:
               
41-400
               

               
Cow position:
               
chrX:20710114-20709750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
100, 16
               

               
Conread position:
               
41-421
               

               
Cow position:
               
chrX:38964148-38963760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 140
               

               
Conread position:
               
41-423
               

               
Cow position:
               
chrX:28787393-28787018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 27
               

               
Conread position:
               
41-423
               

               
Cow position:
               
chrX:32743578-32743185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 247
               

               
Conread position:
               
41-469
               

               
Cow position:
               
chrX:11675106-11674664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 387
               

               
Conread position:
               
41-472
               

               
Cow position:
               
chrX:28929882-28929458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
41-476
               

               
Cow position:
               
chrX:30163040-30162609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 353
               

               
Conread position:
               
41-477
               

               
Cow position:
               
chrX:1616001-1616455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 254
               

               
Conread position:
               
41-477
               

               
Cow position:
               
chrX:3154202-3154653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 97
               

               
Conread position:
               
41-477
               

               
Cow position:
               
chrX:13785320-13785776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
41-477
               

               
Cow position:
               
chrX:18694887-18695324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 44
               

               
Conread position:
               
41-477
               

               
Cow position:
               
chrX:19879084-19878635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
100, 55
               

               
Conread position:
               
41-477
               

               
Cow position:
               
chrX:25967066-25966651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 13
               

               
Conread position:
               
41-477
               

               
Cow position:
               
chrX:34565326-34564902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 124
               

               
Conread position:
               
41-477
               

               
Cow position:
               
chrX:39545935-39546377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 44
               

               
Conread position:
               
42-285
               

               
Cow position:
               
chrX:24259542-24259790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
96, 112
               

               
Conread position:
               
42-355
               

               
Cow position:
               
chrX:42875022-42874697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
108, 42
               

               
Conread position:
               
42-461
               

               
Cow position:
               
chrX:10302379-10301956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 134
               

               
Conread position:
               
42-476
               

               
Cow position:
               
chrX:14973702-14974132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
109, 45
               

               
Conread position:
               
43-207
               

               
Cow position:
               
chrX:40643029-40642862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
41, 156
               

               
Conread position:
               
43-212
               

               
Cow position:
               
chrX:25388199-25388364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
95, 36
               

               
Conread position:
               
43-245
               

               
Cow position:
               
chrX:23667164-23666954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
43-282
               

               
Cow position:
               
chrX:35925995-35925758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
127, 49
               

               
Conread position:
               
43-309
               

               
Cow position:
               
chrX:11746884-11746613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
95, 37
               

               
Conread position:
               
43-310
               

               
Cow position:
               
chrX:3147240-3146966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
48, 127
               

               
Conread position:
               
43-311
               

               
Cow position:
               
chrX:18456444-18456161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 259
               

               
Conread position:
               
43-312
               

               
Cow position:
               
chrX:27287694-27287951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
42, 80
               

               
Conread position:
               
43-315
               

               
Cow position:
               
chrX:37956396-37956131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 45
               

               
Conread position:
               
43-417
               

               
Cow position:
               
chrX:48248862-48248474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
43-431
               

               
Cow position:
               
chrX:40269529-40269115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
43-467
               

               
Cow position:
               
chrX:2300963-2300537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 17
               

               
Conread position:
               
43-467
               

               
Cow position:
               
chrX:39701263-39700825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 27
               

               
Conread position:
               
43-477
               

               
Cow position:
               
chrX:1978552-1978092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 96
               

               
Conread position:
               
43-477
               

               
Cow position:
               
chrX:31260581-31261035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 405
               

               
Conread position:
               
44-190
               

               
Cow position:
               
chrX:48190955-48191104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
44-225
               

               
Cow position:
               
chrX:8913960-8913780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 14
               

               
Conread position:
               
44-225
               

               
Cow position:
               
chrX:8915704-8915524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 14
               

               
Conread position:
               
44-283
               

               
Cow position:
               
chrX:2147383-2147128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
94, 47
               

               
Conread position:
               
44-299
               

               
Cow position:
               
chrX:20791778-20792037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
39, 247
               

               
Conread position:
               
44-438
               

               
Cow position:
               
chrX:11562191-11561775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 26
               

               
Conread position:
               
45-283
               

               
Cow position:
               
chrX:29032451-29032208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
32, 155
               

               
Conread position:
               
45-306
               

               
Cow position:
               
chrX:16416545-16416282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
106, 27
               

               
Conread position:
               
45-312
               

               
Cow position:
               
chrX:25570957-25571228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
40, 112
               

               
Conread position:
               
45-477
               

               
Cow position:
               
chrX:24201219-24200797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 27
               

               
Conread position:
               
45-477
               

               
Cow position:
               
chrX:42171256-42171697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
46-310
               

               
Cow position:
               
chrX:42011316-42011050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
167, 91
               

               
Conread position:
               
48-309
               

               
Cow position:
               
chrX:21664687-21664952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
36, 7
               

               
Conread position:
               
48-315
               

               
Cow position:
               
chrX:17541992-17541729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
148, 7
               

               
Conread position:
               
49-228
               

               
Cow position:
               
chrX:34994162-34993988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 8
               

               
Conread position:
               
49-443
               

               
Cow position:
               
chrX:2786524-2786917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 19
               

               
Conread position:
               
49-477
               

               
Cow position:
               
chrX:43647713-43648156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 6
               

               
Conread position:
               
51-169
               

               
Cow position:
               
chrX:7345118-7344999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
89, 116
               

               
Conread position:
               
51-252
               

               
Cow position:
               
chrX:46028953-46029157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
33, 12
               

               
Conread position:
               
51-255
               

               
Cow position:
               
chrX:16514231-16514443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
51-284
               

               
Cow position:
               
chrX:8917877-8917646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
51-303
               

               
Cow position:
               
chrX:30484175-30484428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
122, 61
               

               
Conread position:
               
51-306
               

               
Cow position:
               
chrX:13322965-13323226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
51-313
               

               
Cow position:
               
chrX:19930683-19930423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
37, 20
               

               
Conread position:
               
51-462
               

               
Cow position:
               
chrX:17271251-17271679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 245
               

               
Conread position:
               
51-468
               

               
Cow position:
               
chrX:25419124-25419553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 247
               

               
Conread position:
               
51-477
               

               
Cow position:
               
chrX:12249835-12249403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 58
               

               
Conread position:
               
53-284
               

               
Cow position:
               
chrX:8681896-8682137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
32, 195
               

               
Conread position:
               
53-376
               

               
Cow position:
               
chrX:5046868-5047199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
85, 7
               

               
Conread position:
               
54-476
               

               
Cow position:
               
chrX:38071739-38072164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
55-282
               

               
Cow position:
               
chrX:29121073-29120851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
88, 37
               

               
Conread position:
               
55-311
               

               
Cow position:
               
chrX:2648324-2648581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
36, 171
               

               
Conread position:
               
55-315
               

               
Cow position:
               
chrX:8517898-8517641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
30, 84
               

               
Conread position:
               
55-315
               

               
Cow position:
               
chrX:37119622-37119364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
86, 120
               

               
Conread position:
               
55-430
               

               
Cow position:
               
chrX:161438-161067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
86, 37
               

               
Conread position:
               
57-258
               

               
Cow position:
               
chrX:38188049-38188264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 117
               

               
Conread position:
               
58-238
               

               
Cow position:
               
chrX:33590751-33590566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
80, 28
               

               
Conread position:
               
58-477
               

               
Cow position:
               
chrX:33826990-33827435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 373
               

               
Conread position:
               
59-315
               

               
Cow position:
               
chrX:678549-678803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
60-312
               

               
Cow position:
               
chrX:31571397-31571163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
60-315
               

               
Cow position:
               
chrX:40279840-40279586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
60-347
               

               
Cow position:
               
chrX:488516-488217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 243
               

               
Conread position:
               
61-326
               

               
Cow position:
               
chrX:17042709-17042442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 26
               

               
Conread position:
               
61-373
               

               
Cow position:
               
chrX:35273374-35273045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
80, 13
               

               
Conread position:
               
61-430
               

               
Cow position:
               
chrX:42247165-42247536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 31
               

               
Conread position:
               
62-416
               

               
Cow position:
               
chrX:15329667-15329307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 38
               

               
Conread position:
               
64-477
               

               
Cow position:
               
chrX:36840890-36840463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 63
               

               
Conread position:
               
65-267
               

               
Cow position:
               
chrX:31312044-31311835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
65-392
               

               
Cow position:
               
chrX:28157515-28157165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
76, 7
               

               
Conread position:
               
65-475
               

               
Cow position:
               
chrX:48246831-48247233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 94
               

               
Conread position:
               
66-417
               

               
Cow position:
               
chrX:32170871-32171229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 26
               

               
Conread position:
               
66-423
               

               
Cow position:
               
chrX:28098130-28097778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
17, 89
               

               
Conread position:
               
67-303
               

               
Cow position:
               
chrX:11589574-11589815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
74, 18
               

               
Conread position:
               
67-422
               

               
Cow position:
               
chrX:38439495-38439122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 215
               

               
Conread position:
               
67-432
               

               
Cow position:
               
chrX:34441434-34441808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
68-312
               

               
Cow position:
               
chrX:27680406-27680171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
145, 18
               

               
Conread position:
               
68-428
               

               
Cow position:
               
chrX:47054513-47054875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
70, 7
               

               
Conread position:
               
69-171
               

               
Cow position:
               
chrX:16418873-16418769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
72, 28
               

               
Conread position:
               
75-283
               

               
Cow position:
               
chrX:6480006-6479798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
17, 121
               

               
Conread position:
               
75-336
               

               
Cow position:
               
chrX:46072813-46073075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
66, 12
               

               
Conread position:
               
75-477
               

               
Cow position:
               
chrX:728901-729271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
306, 17
               

               
Conread position:
               
75-477
               

               
Cow position:
               
chrX:34238723-34238322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
97, 63
               

               
Conread position:
               
76-303
               

               
Cow position:
               
chrX:21642471-21642701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
20, 11
               

               
Conread position:
               
76-306
               

               
Cow position:
               
chrX:618997-619234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
74, 218
               

               
Conread position:
               
76-306
               

               
Cow position:
               
chrX:41884407-41884644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
65, 205
               

               
Conread position:
               
76-312
               

               
Cow position:
               
chrX:9201557-9201315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
65, 217
               

               
Conread position:
               
76-312
               

               
Cow position:
               
chrX:23497662-23497895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 16
               

               
Conread position:
               
76-341
               

               
Cow position:
               
chrX:17725980-17725711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
76-412
               

               
Cow position:
               
chrX:40557674-40558018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 147
               

               
Conread position:
               
76-422
               

               
Cow position:
               
chrX:20583027-20582678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 46
               

               
Conread position:
               
76-472
               

               
Cow position:
               
chrX:19023451-19023034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
67, 322
               

               
Conread position:
               
76-477
               

               
Cow position:
               
chrX:34532525-34532133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 11
               

               
Conread position:
               
76-477
               

               
Cow position:
               
chrX:42994618-42994216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 17
               

               
Conread position:
               
77-326
               

               
Cow position:
               
chrX:7721993-7721736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
77-400
               

               
Cow position:
               
chrX:35681347-35681005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
64, 142
               

               
Conread position:
               
77-445
               

               
Cow position:
               
chrX:34192677-34192303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 152
               

               
Conread position:
               
78-234
               

               
Cow position:
               
chrX:31273250-31273091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
78-267
               

               
Cow position:
               
chrX:8869399-8869599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
65, 87
               

               
Conread position:
               
78-312
               

               
Cow position:
               
chrX:26875878-26876113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
60, 195
               

               
Conread position:
               
78-475
               

               
Cow position:
               
chrX:35609993-35609590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 13
               

               
Conread position:
               
78-477
               

               
Cow position:
               
chrX:20887639-20888042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
13, 165
               

               
Conread position:
               
79-322
               

               
Cow position:
               
chrX:15815088-15814855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
57, 19
               

               
Conread position:
               
79-432
               

               
Cow position:
               
chrX:4043857-4044219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
121, 13
               

               
Conread position:
               
79-475
               

               
Cow position:
               
chrX:4996601-4996216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
26, 47
               

               
Conread position:
               
81-423
               

               
Cow position:
               
chrX:24424386-24424745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
60, 281
               

               
Conread position:
               
81-477
               

               
Cow position:
               
chrX:25281476-25281888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
137, 10
               

               
Conread position:
               
82-388
               

               
Cow position:
               
chrX:45414299-45414614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
69, 191
               

               
Conread position:
               
83-270
               

               
Cow position:
               
chrX:47178155-47177960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
61, 179
               

               
Conread position:
               
83-300
               

               
Cow position:
               
chrX:37574845-37574636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
83-477
               

               
Cow position:
               
chrX:38936697-38936293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 71
               

               
Conread position:
               
84-383
               

               
Cow position:
               
chrX:19188937-19188627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
59, 208
               

               
Conread position:
               
85-477
               

               
Cow position:
               
chrX:160034-160438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 224
               

               
Conread position:
               
86-308
               

               
Cow position:
               
chrX:7361864-7362081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
11, 43
               

               
Conread position:
               
87-284
               

               
Cow position:
               
chrX:42282424-42282225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
118, 64
               

               
Conread position:
               
87-310
               

               
Cow position:
               
chrX:37048581-37048811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
63, 88
               

               
Conread position:
               
89-424
               

               
Cow position:
               
chrX:16789858-16790177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
296, 55
               

               
Conread position:
               
91-281
               

               
Cow position:
               
chrX:18216278-18216072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
91-484
               

               
Cow position:
               
chrX:35387910-35388312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
50, 187
               

               
Conread position:
               
92-360
               

               
Cow position:
               
chrX:31294572-31294826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
223, 45
               

               
Conread position:
               
94-422
               

               
Cow position:
               
chrX:25848901-25848563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
119, 41
               

               
Conread position:
               
95-256
               

               
Cow position:
               
chrX:30005254-30005089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
45, 87
               

               
Conread position:
               
95-477
               

               
Cow position:
               
chrX:40452221-40452619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 192
               

               
Conread position:
               
96-417
               

               
Cow position:
               
chrX:39555850-39556163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
218, 58
               

               
Conread position:
               
96-470
               

               
Cow position:
               
chrX:17744052-17743679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 19
               

               
Conread position:
               
98-432
               

               
Cow position:
               
chrX:6414033-6413683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 148
               

               
Conread position:
               
103-303
               

               
Cow position:
               
chrX:40035463-40035673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
112-477
               

               
Cow position:
               
chrX:34754218-34754590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
121-477
               

               
Cow position:
               
chrX:7806342-7805978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 142
               

               
Conread position:
               
124-477
               

               
Cow position:
               
chrX:11581904-11581539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
18, 79
               

               
Conread position:
               
137-477
               

               
Cow position:
               
chrX:35268825-35268495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
65, 12
               

               
Conread position:
               
155-477
               

               
Cow position:
               
chrX:9538488-9538140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
66, 244
               

               
Conread position:
               
155-477
               

               
Cow position:
               
chrX:9838068-9837716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 303
               

               
Conread position:
               
177-477
               

               
Cow position:
               
chrX:37205627-37205315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
133, 47
               

               
Conread position:
               
181-477
               

               
Cow position:
               
chrX:25151090-25150789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
133, 29
               

               
Conread position:
               
181-477
               

               
Cow position:
               
chrX:38577428-38577134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
134, 97
               

               
Conread position:
               
221-477
               

               
Cow position:
               
chrX:20711044-20710792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
98, 43
               

               
Conread position:
               
305-476
               

               
Cow position:
               
chrX:38999666-38999499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
80, 24
               

               
Conread position:
               
307-473
               

               
Cow position:
               
chrX:38840624-38840455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 123
               

               
Conread position:
               
309-477
               

               
Cow position:
               
chrX:4409337-4409161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
76, 89
               

               
Conread position:
               
310-477
               

               
Cow position:
               
chrX:7513256-7513093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 120
               

               
Conread position:
               
314-475
               

               
Cow position:
               
chrX:3582957-3582795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
71, 115
               

               
Conread position:
               
314-477
               

               
Cow position:
               
chrX:7425190-7425026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
71, 116
               

               
Conread position:
               
315-473
               

               
Cow position:
               
chrX:21815928-21815769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
70, 114
               

               
Conread position:
               
315-477
               

               
Cow position:
               
chrX:8517367-8517204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
70, 114
               

               
Conread position:
               
317-477
               

               
Cow position:
               
chrX:16284217-16284378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
68, 116
               

               
Conread position:
               
322-477
               

               
Cow position:
               
chrX:40788912-40788755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
63, 87
               
Show alignments to all cow chromosomes.